BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0856.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774476.1| sugar ABC transporter periplasmic protein [H... 400 e-110 ref|YP_004752757.1| putative fucose ABC transporter substrate-bi... 386 e-105 ref|ZP_02888220.1| periplasmic binding protein/LacI transcriptio... 374 e-102 ref|YP_001811627.1| periplasmic binding protein/LacI transcripti... 374 e-102 ref|ZP_08871675.1| periplasmic-binding protein/LacI transcriptio... 370 e-101 >ref|YP_003774476.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62568.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 236/244 (96%), Positives = 240/244 (98%) Query: 1 MVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTA 60 MVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTA Sbjct: 69 MVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTA 128 Query: 61 TTDNRAAAALAADKMAELIGKEGEVAVVAHDQTSRTGVDRRDGFLERIKANYPKIKVVSV 120 TTDNRAAAALAADKMAEL+GKEGEVAVVAHDQTSRTGVDRRDGFLERIK+ YPKIKVVSV Sbjct: 129 TTDNRAAAALAADKMAELVGKEGEVAVVAHDQTSRTGVDRRDGFLERIKSAYPKIKVVSV 188 Query: 121 QYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKRKIIIIGYDSGKQQ 180 QYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKRKIIIIGYDSGKQQ Sbjct: 189 QYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKRKIIIIGYDSGKQQ 248 Query: 181 KDAIRDGVMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDPKIKE 240 KDAIR+G+MAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDD KI Sbjct: 249 KDAIREGIMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDAKIAA 308 Query: 241 VLYD 244 VLYD Sbjct: 309 VLYD 312 >ref|YP_004752757.1| putative fucose ABC transporter substrate-binding component [Collimonas fungivorans Ter331] gb|AEK61934.1| putative fucose ABC transporter, substrate-binding component [Collimonas fungivorans Ter331] Length = 327 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 218/244 (89%), Positives = 234/244 (95%), Gaps = 1/244 (0%) Query: 1 MVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTA 60 MVDKQIDMLSAAL KKP+AIGFAALDSKAA+PLLKKAQAA IPVVAFDSGVDSDIPVTTA Sbjct: 85 MVDKQIDMLSAALGKKPKAIGFAALDSKAALPLLKKAQAAHIPVVAFDSGVDSDIPVTTA 144 Query: 61 TTDNRAAAALAADKMAELIGKEGEVAVVAHDQTSRTGVDRRDGFLERIKANYPKIKVVSV 120 TTDN+AAAALAADKMAELIGKEGEVAVVAHDQTSRTG+DRRDGF+ER+KA YPKIK+VS+ Sbjct: 145 TTDNKAAAALAADKMAELIGKEGEVAVVAHDQTSRTGIDRRDGFVERMKA-YPKIKIVSI 203 Query: 121 QYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKRKIIIIGYDSGKQQ 180 QYGAGDQLKSTE+TKSILQAYP +KG FGTNEGSAIGV+NG KE KRK++IIGYDSGKQQ Sbjct: 204 QYGAGDQLKSTEITKSILQAYPHLKGAFGTNEGSAIGVLNGAKETKRKLVIIGYDSGKQQ 263 Query: 181 KDAIRDGVMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDPKIKE 240 KDAI+DG MAGAITQNPVGIGYKTVEAAVKA+KGEKLPKVIDTGFYWYDKSNI+DPKI Sbjct: 264 KDAIKDGSMAGAITQNPVGIGYKTVEAAVKALKGEKLPKVIDTGFYWYDKSNINDPKIVA 323 Query: 241 VLYD 244 VLYD Sbjct: 324 VLYD 327 >ref|ZP_02888220.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia ambifaria IOP40-10] gb|EDT06194.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia ambifaria IOP40-10] Length = 313 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 210/244 (86%), Positives = 234/244 (95%) Query: 1 MVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTA 60 MVDKQIDMLSAA+AKKP A+GFAALDSKAA+PLLKKAQA KIPV+AFDSGVDSDIPVTTA Sbjct: 70 MVDKQIDMLSAAIAKKPAALGFAALDSKAALPLLKKAQAEKIPVIAFDSGVDSDIPVTTA 129 Query: 61 TTDNRAAAALAADKMAELIGKEGEVAVVAHDQTSRTGVDRRDGFLERIKANYPKIKVVSV 120 T+N+AAA+LAADK+A LIG EGEVAVVAHDQTSRTG+DRRDGFLER+K+ +PK++VV+V Sbjct: 130 ATNNKAAASLAADKLAALIGDEGEVAVVAHDQTSRTGIDRRDGFLERMKSAHPKVRVVTV 189 Query: 121 QYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKRKIIIIGYDSGKQQ 180 QYG GDQLKSTEVTKSILQAYPK+KG+FGTNEGSAIGVVNGV+EMKRK++I+GYDSGKQQ Sbjct: 190 QYGEGDQLKSTEVTKSILQAYPKLKGLFGTNEGSAIGVVNGVREMKRKVVIVGYDSGKQQ 249 Query: 181 KDAIRDGVMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDPKIKE 240 KDAIR G+MAGAITQNP+GIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDK+NIDDPKI Sbjct: 250 KDAIRSGLMAGAITQNPIGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKTNIDDPKISA 309 Query: 241 VLYD 244 VLYD Sbjct: 310 VLYD 313 >ref|YP_001811627.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB67411.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia ambifaria MC40-6] Length = 313 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 210/244 (86%), Positives = 234/244 (95%) Query: 1 MVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTA 60 MVDKQIDMLSAA+AKKP A+GFAALDSKAA+PLLKKAQA KIPV+AFDSGVDSDIPVTTA Sbjct: 70 MVDKQIDMLSAAIAKKPAALGFAALDSKAALPLLKKAQAEKIPVIAFDSGVDSDIPVTTA 129 Query: 61 TTDNRAAAALAADKMAELIGKEGEVAVVAHDQTSRTGVDRRDGFLERIKANYPKIKVVSV 120 T+N+AAA+LAADK+A LIG EGEVAVVAHDQTSRTG+DRRDGFLER+K+ +PK++VV+V Sbjct: 130 ATNNKAAASLAADKLAALIGDEGEVAVVAHDQTSRTGIDRRDGFLERMKSAHPKVRVVTV 189 Query: 121 QYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKRKIIIIGYDSGKQQ 180 QYG GDQLKSTEVTKSILQAYPK+KG+FGTNEGSAIGVVNGV+EMKRK++I+GYDSGKQQ Sbjct: 190 QYGEGDQLKSTEVTKSILQAYPKLKGLFGTNEGSAIGVVNGVREMKRKVVIVGYDSGKQQ 249 Query: 181 KDAIRDGVMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDPKIKE 240 KDAIR G+MAGAITQNP+GIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDK+NIDDPKI Sbjct: 250 KDAIRSGLMAGAITQNPIGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKTNIDDPKISA 309 Query: 241 VLYD 244 VLYD Sbjct: 310 VLYD 313 >ref|ZP_08871675.1| periplasmic-binding protein/LacI transcriptional regulator [Verminephrobacter sp. At4] Length = 313 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 210/244 (86%), Positives = 232/244 (95%) Query: 1 MVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTA 60 MVDKQIDMLSAALAK P+A+G AALDSKA IPLLKKAQAAK+PVVAFDSGVDSDIPVTTA Sbjct: 70 MVDKQIDMLSAALAKNPKALGLAALDSKAVIPLLKKAQAAKVPVVAFDSGVDSDIPVTTA 129 Query: 61 TTDNRAAAALAADKMAELIGKEGEVAVVAHDQTSRTGVDRRDGFLERIKANYPKIKVVSV 120 +TDNRAAAALAADK+AELIGK GEVAVVAHDQTSRTGVDRRDGF+ERIKA+YP +K+VSV Sbjct: 130 STDNRAAAALAADKLAELIGKSGEVAVVAHDQTSRTGVDRRDGFVERIKASYPDVKIVSV 189 Query: 121 QYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKRKIIIIGYDSGKQQ 180 QYG GD LKSTE+ KSILQAYP +KGIFGTNEGSA+GV NGVKEMKR+++I+GYDSGKQQ Sbjct: 190 QYGGGDHLKSTEIAKSILQAYPNLKGIFGTNEGSAVGVANGVKEMKRRLVIVGYDSGKQQ 249 Query: 181 KDAIRDGVMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDPKIKE 240 KDAIRDG++AG+ITQNPVGIGYKTVEAAVKA+KGEKLPKVIDTGFYWYDK+NI+DPKI Sbjct: 250 KDAIRDGLIAGSITQNPVGIGYKTVEAAVKALKGEKLPKVIDTGFYWYDKTNINDPKIAA 309 Query: 241 VLYD 244 VLYD Sbjct: 310 VLYD 313