BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0854.p (518 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum... 888 0.0 ref|YP_001778864.1| ABC transporter-like protein [Burkholderia c... 789 0.0 ref|YP_623196.1| ABC transporter related [Burkholderia cenocepac... 785 0.0 ref|YP_004348093.1| ABC transporter ATP-binding protein [Burkhol... 784 0.0 ref|YP_001811629.1| ABC transporter-like protein [Burkholderia a... 782 0.0 >ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ62566.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 477/519 (91%), Positives = 496/519 (95%), Gaps = 2/519 (0%) Query: 1 MQQEHETQARAAASASAT--PLIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAG 58 MQ++ ET A++S++ P+IALRNV KRFPGVLALDNCQFELAAGEVHALMGENGAG Sbjct: 1 MQEDKETSTTGVAASSSSSVPVIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAG 60 Query: 59 KSTLMKILSGVYQRDSGDILLDGTPVEIAEPRQAQALGIGIIHQELNLMNHLSAAQNIFI 118 KSTLMKILSGVYQRDSGDILLDG PVEI EPRQAQALGIGIIHQELNLMNHLSAAQNIFI Sbjct: 61 KSTLMKILSGVYQRDSGDILLDGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFI 120 Query: 119 GREPRKGFGLIIDEEQLNRQAAAIFARMRLDMDPRTPVGDLTVARQQMVEIAKALSFDSR 178 GREPRK GL IDE++LNRQAAAIFARMRLDMDP TPVG+LTVARQQMVEIAKALSFDSR Sbjct: 121 GREPRKAMGLFIDEDELNRQAAAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSR 180 Query: 179 VLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIA 238 VLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIA Sbjct: 181 VLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIA 240 Query: 239 TVPMQGTSMDTIISMMVGRALDGEQRLPPDTSGNEVVLEVRGLNRGRAIRDVSFKLRRGE 298 TVPMQ TSMDTIISMMVGRALDGEQR+PPDTS N+VVLEVRGLNRGRAIRDVSF LR+GE Sbjct: 241 TVPMQETSMDTIISMMVGRALDGEQRIPPDTSRNDVVLEVRGLNRGRAIRDVSFTLRKGE 300 Query: 299 ILGFAGLMGAGRTEVARAIFGADPLESGEIIIHGGKAVIRQPADAVAHGIGYLSEDRKHF 358 ILGFAGLMGAGRTEVARAIFGADPLE+GEIIIHGGKAVI+ PADAVAHGIGYLSEDRKHF Sbjct: 301 ILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHF 360 Query: 359 GLAVGMDVQANIALSSMGRFTKAGFMDQRAIREVAQGYVRQLAIKTPSVEQQARLLSGGN 418 GLAVGMDVQANIALSSMGRFT+ GFMDQRAIRE AQ YVRQLAIKTPSVEQQARLLSGGN Sbjct: 361 GLAVGMDVQANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGN 420 Query: 419 QQKIVIAKWLLRDCDILFFDEPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLR 478 QQKIVIAKWLLRDCDILFFDEPTRGID+GAKSEIYKLLDALAEQGKAIVMISSELPEVLR Sbjct: 421 QQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLR 480 Query: 479 MSHRILVMCEGRVTGELARADATQENIMQLATQRESAVA 517 MSHR+LVMCEGR+TGELARADATQE IMQLATQRESAVA Sbjct: 481 MSHRVLVMCEGRITGELARADATQEKIMQLATQRESAVA 519 >ref|YP_001778864.1| ABC transporter-like protein [Burkholderia cenocepacia MC0-3] gb|ACA94374.1| ABC transporter related [Burkholderia cenocepacia MC0-3] Length = 514 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 417/499 (83%), Positives = 449/499 (89%), Gaps = 1/499 (0%) Query: 19 PLIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDIL 78 PLIAL + KRFPGV ALD+C+F+L AGEVHALMGENGAGKSTLMKIL+GVYQRD+G+I Sbjct: 14 PLIALTGIGKRFPGVQALDDCRFDLRAGEVHALMGENGAGKSTLMKILAGVYQRDAGEIR 73 Query: 79 LDGTPVEIAEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEEQLNRQ 138 +DG PVEIA+PR AQALGIGIIHQELNLMNHLS AQNIFIGREPR FG+ +DEE+LNR Sbjct: 74 MDGRPVEIADPRAAQALGIGIIHQELNLMNHLSVAQNIFIGREPRGRFGVFVDEEKLNRD 133 Query: 139 AAAIFARMRLDMDPRTPVGDLTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELF 198 AAAIF RMRLD+DPRTPVG LTVA+QQMVEIAKALSFDSR LIMDEPTAALNNAEIAELF Sbjct: 134 AAAIFQRMRLDLDPRTPVGRLTVAKQQMVEIAKALSFDSRALIMDEPTAALNNAEIAELF 193 Query: 199 RIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQGTSMDTIISMMVGRA 258 RIIRDL+A GVGIVYISHKMDELRQIADRV+VMRDGKY+ATVPM TSM++IISMMVGR Sbjct: 194 RIIRDLRAHGVGIVYISHKMDELRQIADRVTVMRDGKYVATVPMADTSMESIISMMVGRQ 253 Query: 259 LDGEQRLPPDTSGNEVVLEVRGLNRGRAIRDVSFKLRRGEILGFAGLMGAGRTEVARAIF 318 LD E R PPDTSGNE+ LEVRGL+RGRAIRDV F LRRGEILGFAGLMGAGRTEVARA+F Sbjct: 254 LDTESRTPPDTSGNEIALEVRGLSRGRAIRDVGFTLRRGEILGFAGLMGAGRTEVARAVF 313 Query: 319 GADPLESGEIIIHGGKAVIRQPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRF 378 GADP+++GEI +HG IR PADAV +GIGYLSEDRKHFGLAVGMDVQ NIALSSM RF Sbjct: 314 GADPVDAGEIRVHGRAVTIRTPADAVKYGIGYLSEDRKHFGLAVGMDVQNNIALSSMRRF 373 Query: 379 TKAG-FMDQRAIREVAQGYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFF 437 + G F+D R +RE AQ YVRQLAI+TPSV Q ARLLSGGNQQKIVIAKWLLRDCDILFF Sbjct: 374 VRRGLFLDARGMREAAQSYVRQLAIRTPSVAQPARLLSGGNQQKIVIAKWLLRDCDILFF 433 Query: 438 DEPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGELAR 497 DEPTRGID+GAKSEIYKLLDALA GKAIVMISSELPEVLRMSHRILVMCEGRVTGEL Sbjct: 434 DEPTRGIDVGAKSEIYKLLDALAADGKAIVMISSELPEVLRMSHRILVMCEGRVTGELRA 493 Query: 498 ADATQENIMQLATQRESAV 516 ADATQE IMQLATQRES V Sbjct: 494 ADATQEKIMQLATQRESTV 512 >ref|YP_623196.1| ABC transporter related [Burkholderia cenocepacia AU 1054] ref|YP_838666.1| ABC transporter related [Burkholderia cenocepacia HI2424] sp|Q1BQ82|RGMG2_BURCA RecName: Full=Putative ribose/galactose/methyl galactoside import ATP-binding protein 2 sp|A0B297|RGMG2_BURCH RecName: Full=Putative ribose/galactose/methyl galactoside import ATP-binding protein 2 gb|ABF78223.1| monosaccharide ABC transporter ATP-binding protein, CUT2 family [Burkholderia cenocepacia AU 1054] gb|ABK11773.1| monosaccharide ABC transporter ATP-binding protein, CUT2 family [Burkholderia cenocepacia HI2424] Length = 512 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 413/502 (82%), Positives = 450/502 (89%), Gaps = 1/502 (0%) Query: 16 SATPLIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSG 75 + PLIAL + KRFPGV ALD+C+F+L AGEVHALMGENGAGKSTLMKIL+GVYQRD+G Sbjct: 9 TTQPLIALTGIGKRFPGVQALDDCRFDLRAGEVHALMGENGAGKSTLMKILAGVYQRDAG 68 Query: 76 DILLDGTPVEIAEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEEQL 135 +I +DG PVEIA+PR AQALGIGIIHQELNLMNHLS AQNIFIGREPR FG+ +DEE+L Sbjct: 69 EIRMDGRPVEIADPRAAQALGIGIIHQELNLMNHLSVAQNIFIGREPRGRFGVFVDEEKL 128 Query: 136 NRQAAAIFARMRLDMDPRTPVGDLTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIA 195 NR AAAIF RMRLD+DPRTPVG LTVA+QQMVEIAKALSFDSR LIMDEPTAALNNAEIA Sbjct: 129 NRDAAAIFQRMRLDLDPRTPVGRLTVAKQQMVEIAKALSFDSRALIMDEPTAALNNAEIA 188 Query: 196 ELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQGTSMDTIISMMV 255 ELFRIIRDL+A GVGI+YISHKMDELRQIADRV+VMRDGKY+ATVPM TSM++IISMMV Sbjct: 189 ELFRIIRDLRAHGVGIIYISHKMDELRQIADRVTVMRDGKYVATVPMADTSMESIISMMV 248 Query: 256 GRALDGEQRLPPDTSGNEVVLEVRGLNRGRAIRDVSFKLRRGEILGFAGLMGAGRTEVAR 315 GR LD E R PPDTSGNE+ LEVRGL+RGRAIRDV F LRRGEILGFAGLMGAGRTEVAR Sbjct: 249 GRQLDTETRTPPDTSGNEIALEVRGLSRGRAIRDVGFTLRRGEILGFAGLMGAGRTEVAR 308 Query: 316 AIFGADPLESGEIIIHGGKAVIRQPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSM 375 A+FGADP+++GEI +HG IR PADAV +GIGYLSEDRKHFGLA+GMDVQ NIALSSM Sbjct: 309 AVFGADPVDAGEIRVHGRAVTIRTPADAVKYGIGYLSEDRKHFGLAIGMDVQNNIALSSM 368 Query: 376 GRFTKAG-FMDQRAIREVAQGYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDI 434 RF + G F+D R +R+ A+ YVRQLAI+TPSV Q ARLLSGGNQQKIVIAKWLLRDCDI Sbjct: 369 RRFVRRGLFLDARGMRDAARSYVRQLAIRTPSVAQPARLLSGGNQQKIVIAKWLLRDCDI 428 Query: 435 LFFDEPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGE 494 LFFDEPTRGID+GAKSEIYKLLDALA GKAIVMISSELPEVLRMSHRILVMCEGRVTGE Sbjct: 429 LFFDEPTRGIDVGAKSEIYKLLDALAADGKAIVMISSELPEVLRMSHRILVMCEGRVTGE 488 Query: 495 LARADATQENIMQLATQRESAV 516 L ADATQE IMQLATQRES V Sbjct: 489 LRAADATQEKIMQLATQRESTV 510 >ref|YP_004348093.1| ABC transporter ATP-binding protein [Burkholderia gladioli BSR3] gb|AEA62581.1| ABC transporter ATP-binding protein [Burkholderia gladioli BSR3] Length = 520 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 416/503 (82%), Positives = 450/503 (89%), Gaps = 1/503 (0%) Query: 15 ASATPLIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDS 74 A PLIAL +SKRFPGVLALD+C+F+L GEVHALMGENGAGKSTLMKIL+GVYQ+D Sbjct: 16 AERAPLIALSGISKRFPGVLALDDCRFDLRVGEVHALMGENGAGKSTLMKILAGVYQKDE 75 Query: 75 GDILLDGTPVEIAEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEEQ 134 G+I +DG VEIA+PR AQALGIGIIHQELNLMNHLS AQNIFIGREPR G+ +DEE+ Sbjct: 76 GEIHMDGRAVEIADPRTAQALGIGIIHQELNLMNHLSVAQNIFIGREPRGRLGVFVDEER 135 Query: 135 LNRQAAAIFARMRLDMDPRTPVGDLTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEI 194 LNR AAAIFARMRLD+DPRTPVG LTVA+QQMVEIAKALSFDSRVLIMDEPTAALNNAEI Sbjct: 136 LNRDAAAIFARMRLDLDPRTPVGQLTVAKQQMVEIAKALSFDSRVLIMDEPTAALNNAEI 195 Query: 195 AELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQGTSMDTIISMM 254 AELFRIIRDL A GVGIVYISHKMDELRQIADRV+VMRDGKY+ATVPM GTSMD+IISMM Sbjct: 196 AELFRIIRDLLANGVGIVYISHKMDELRQIADRVTVMRDGKYVATVPMAGTSMDSIISMM 255 Query: 255 VGRALDGEQRLPPDTSGNEVVLEVRGLNRGRAIRDVSFKLRRGEILGFAGLMGAGRTEVA 314 VGR L+ E R PPDTS NEV LEVRGL+RGRAIR+V F LRRGEILGFAGLMGAGRTEVA Sbjct: 256 VGRQLETESRTPPDTSANEVALEVRGLSRGRAIREVGFTLRRGEILGFAGLMGAGRTEVA 315 Query: 315 RAIFGADPLESGEIIIHGGKAVIRQPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSS 374 RA+FGADP+++GEI +HG IR PADAV GIGYLSEDRKHFGLAVG+DVQ NIALSS Sbjct: 316 RAVFGADPIDAGEIRVHGRAVTIRTPADAVKFGIGYLSEDRKHFGLAVGLDVQNNIALSS 375 Query: 375 MGRFTKAG-FMDQRAIREVAQGYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCD 433 M RF + G F+D R +R+ AQGYVRQLAI+TPSV Q ARLLSGGNQQKIVIAKWLLRDCD Sbjct: 376 MRRFLRRGLFLDARRMRDTAQGYVRQLAIRTPSVMQPARLLSGGNQQKIVIAKWLLRDCD 435 Query: 434 ILFFDEPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTG 493 ILFFDEPTRGID+GAKSEIYKLLDALA GKAIVMISSELPEVLRMSHRILVMCEGRVTG Sbjct: 436 ILFFDEPTRGIDVGAKSEIYKLLDALAAAGKAIVMISSELPEVLRMSHRILVMCEGRVTG 495 Query: 494 ELARADATQENIMQLATQRESAV 516 EL+ A+ATQE IMQLATQRES V Sbjct: 496 ELSAAEATQEKIMQLATQRESTV 518 >ref|YP_001811629.1| ABC transporter-like protein [Burkholderia ambifaria MC40-6] gb|ACB67413.1| ABC transporter related [Burkholderia ambifaria MC40-6] Length = 513 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 420/507 (82%), Positives = 453/507 (89%), Gaps = 4/507 (0%) Query: 11 AAASASATPLIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVY 70 AAASA+ LI L VSKRFPGV ALD+C+F+L AGEVHALMGENGAGKSTLMKIL+GVY Sbjct: 8 AAASAA---LIELTGVSKRFPGVQALDDCRFDLRAGEVHALMGENGAGKSTLMKILAGVY 64 Query: 71 QRDSGDILLDGTPVEIAEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLII 130 Q+D G+I +DG VEI +PR AQALGIGIIHQELNLMNHLS AQNIFIGREPR FG+ + Sbjct: 65 QKDGGEIRMDGRAVEIDDPRAAQALGIGIIHQELNLMNHLSVAQNIFIGREPRGRFGVFV 124 Query: 131 DEEQLNRQAAAIFARMRLDMDPRTPVGDLTVARQQMVEIAKALSFDSRVLIMDEPTAALN 190 DE++LNR AAAIFARMRLD+DPRTPVG LTVA+QQMVEIAKALSFDSRVLIMDEPTAALN Sbjct: 125 DEDKLNRDAAAIFARMRLDLDPRTPVGRLTVAKQQMVEIAKALSFDSRVLIMDEPTAALN 184 Query: 191 NAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQGTSMDTI 250 NAEIAELFRII +L+A GVGIVYISHKMDELRQIADRV+VMRDGKY+ATVPM GTSMD I Sbjct: 185 NAEIAELFRIIGELRAHGVGIVYISHKMDELRQIADRVTVMRDGKYVATVPMAGTSMDAI 244 Query: 251 ISMMVGRALDGEQRLPPDTSGNEVVLEVRGLNRGRAIRDVSFKLRRGEILGFAGLMGAGR 310 I+MMVGR LD E R PPDTS N+V LEVRGL+RGRAIRDV F LRRGEILGFAGLMGAGR Sbjct: 245 IAMMVGRQLDTEFRTPPDTSANDVALEVRGLSRGRAIRDVGFTLRRGEILGFAGLMGAGR 304 Query: 311 TEVARAIFGADPLESGEIIIHGGKAVIRQPADAVAHGIGYLSEDRKHFGLAVGMDVQANI 370 TEVARA+FGADP+++GEI +HG IR PADAVAHGIGYLSEDRKHFGLAVGMDVQ NI Sbjct: 305 TEVARAVFGADPVDAGEIRVHGKTVTIRTPADAVAHGIGYLSEDRKHFGLAVGMDVQNNI 364 Query: 371 ALSSMGRFTKAG-FMDQRAIREVAQGYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLL 429 ALSSM RF + G F+D RA+R+ AQ YVRQLAI+TPSV Q ARLLSGGNQQKIVIAKWLL Sbjct: 365 ALSSMRRFVRRGLFLDARAMRDTAQSYVRQLAIRTPSVAQPARLLSGGNQQKIVIAKWLL 424 Query: 430 RDCDILFFDEPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEG 489 RDCDILFFDEPTRGID+GAKSEIYKLLDALA GKAIVMISSELPEVLRMSHRILVMCEG Sbjct: 425 RDCDILFFDEPTRGIDVGAKSEIYKLLDALAADGKAIVMISSELPEVLRMSHRILVMCEG 484 Query: 490 RVTGELARADATQENIMQLATQRESAV 516 RVTGEL ADATQE IMQLATQRES V Sbjct: 485 RVTGELRAADATQEKIMQLATQRESTV 511