BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0852.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004755013.1| hypothetical protein CFU_4369 [Collimonas fu...   162   1e-38
ref|YP_004153766.1| hypothetical protein Varpa_1439 [Variovorax ...   149   1e-34
ref|YP_002947191.1| protein of unknown function DUF718 [Variovor...   148   2e-34
ref|ZP_02905807.1| conserved hypothetical protein [Burkholderia ...   146   1e-33
ref|YP_773111.1| hypothetical protein Bamb_1219 [Burkholderia am...   143   9e-33

>ref|YP_004755013.1| hypothetical protein CFU_4369 [Collimonas fungivorans Ter331]
 gb|AEK64190.1| conserved hypothetical protein [Collimonas fungivorans Ter331]
          Length = 210

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/114 (69%), Positives = 88/114 (77%), Gaps = 2/114 (1%)

Query: 1   MRTVLALDLKDDPALIAEYEQHHQRIWPEIAAHLRRQGVTGMEIHRLGTRMVMVMVMETD 60
           MR  L LDLKDDP+LI  YE  H+RIWPEIAAHLR  GV GMEI+RLGTR+VM+M  ETD
Sbjct: 98  MRYCLVLDLKDDPSLIGRYETLHRRIWPEIAAHLRLHGVLGMEIYRLGTRLVMLM--ETD 155

Query: 61  DAVFDAAAMAAASERDPKVQAWEALMWRFQAATPWTPAGEKWVPMTRIFDLSAQ 114
           DA++    MA A+  DPKVQ WE LMW FQAATPWTP GEKWV MT+IFDL  Q
Sbjct: 156 DAIYSPERMANAARTDPKVQEWETLMWEFQAATPWTPPGEKWVAMTQIFDLKEQ 209


>ref|YP_004153766.1| hypothetical protein Varpa_1439 [Variovorax paradoxus EPS]
 gb|ADU35655.1| protein of unknown function DUF718 [Variovorax paradoxus EPS]
          Length = 109

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/111 (71%), Positives = 90/111 (81%), Gaps = 2/111 (1%)

Query: 1   MRTVLALDLKDDPALIAEYEQHHQRIWPEIAAHLRRQGVTGMEIHRLGTRMVMVMVMETD 60
           MR  LALDLKDDP LIAEYE +H+ IWPE+ AHL   GVTGMEI+RLGTRMVM+M  ETD
Sbjct: 1   MRHCLALDLKDDPVLIAEYEAYHRNIWPEVRAHLHAHGVTGMEIYRLGTRMVMLM--ETD 58

Query: 61  DAVFDAAAMAAASERDPKVQAWEALMWRFQAATPWTPAGEKWVPMTRIFDL 111
           DA +DA AMA AS+ DPK++ WE LMW+FQA TPWTP GEKWV M RIF+L
Sbjct: 59  DARYDAEAMALASQNDPKIREWEDLMWKFQAPTPWTPEGEKWVGMERIFEL 109


>ref|YP_002947191.1| protein of unknown function DUF718 [Variovorax paradoxus S110]
 gb|ACS21925.1| protein of unknown function DUF718 [Variovorax paradoxus S110]
          Length = 109

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/111 (72%), Positives = 91/111 (81%), Gaps = 2/111 (1%)

Query: 1   MRTVLALDLKDDPALIAEYEQHHQRIWPEIAAHLRRQGVTGMEIHRLGTRMVMVMVMETD 60
           MR  LALDLKDDPALIAEYE +H+ IWPE+ AHL   GVTGMEI+RLGTRMVM+M  ETD
Sbjct: 1   MRHCLALDLKDDPALIAEYEAYHRNIWPEVRAHLHAHGVTGMEIYRLGTRMVMLM--ETD 58

Query: 61  DAVFDAAAMAAASERDPKVQAWEALMWRFQAATPWTPAGEKWVPMTRIFDL 111
           DA +DA AMAAA+  DPK++AWE LMW+FQA TPWTP GEKW+ M RIF L
Sbjct: 59  DARYDAEAMAAATRSDPKIRAWEELMWKFQAPTPWTPEGEKWLEMDRIFKL 109


>ref|ZP_02905807.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT43038.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 113

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/114 (67%), Positives = 89/114 (78%), Gaps = 2/114 (1%)

Query: 1   MRTVLALDLKDDPALIAEYEQHHQRIWPEIAAHLRRQGVTGMEIHRLGTRMVMVMVMETD 60
           MR  LALDLKDDPALIA YE+HH+ +WPE+  HLR  GV GMEI RLGTRM MVM  +TD
Sbjct: 1   MRYCLALDLKDDPALIARYEEHHRAVWPEVLRHLREHGVRGMEIFRLGTRMTMVM--DTD 58

Query: 61  DAVFDAAAMAAASERDPKVQAWEALMWRFQAATPWTPAGEKWVPMTRIFDLSAQ 114
           DAVFDA  +A A++ +P V+AWE +MW+FQA TPWTPAG KW PMT IFDL  Q
Sbjct: 59  DAVFDAERLARATKANPTVRAWEDVMWKFQAPTPWTPAGMKWTPMTCIFDLRTQ 112


>ref|YP_773111.1| hypothetical protein Bamb_1219 [Burkholderia ambifaria AMMD]
 gb|ABI86777.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 113

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 76/114 (66%), Positives = 87/114 (76%), Gaps = 2/114 (1%)

Query: 1   MRTVLALDLKDDPALIAEYEQHHQRIWPEIAAHLRRQGVTGMEIHRLGTRMVMVMVMETD 60
           MR  LALDLKDDP LIA YE+HH+ +WP++  HLR  GV GMEI RLGTRM MVM  +TD
Sbjct: 1   MRYCLALDLKDDPDLIARYEEHHRAVWPDVLRHLREHGVRGMEIFRLGTRMTMVM--DTD 58

Query: 61  DAVFDAAAMAAASERDPKVQAWEALMWRFQAATPWTPAGEKWVPMTRIFDLSAQ 114
           DAVF+A  MA A+E +P V+AWE +MW FQA TPWTPAG KW PMT IFDL  Q
Sbjct: 59  DAVFNAERMAKAAEANPTVRAWEDVMWTFQAPTPWTPAGLKWTPMTCIFDLRTQ 112