BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0847.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774470.1| transcription regulator protein [Herbaspiril... 487 e-136 gb|EGP48463.1| IclR family transcriptional regulator [Achromobac... 307 1e-81 gb|EFV84592.1| IclR family Transcriptional regulator [Achromobac... 307 1e-81 ref|YP_004234152.1| IclR family transcriptional regulator [Acido... 291 9e-77 ref|ZP_01765900.1| transcriptional regulator, IclR family [Burkh... 260 1e-67 >ref|YP_003774470.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62562.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 267/283 (94%), Positives = 278/283 (98%), Gaps = 1/283 (0%) Query: 1 MPRTRKLNPAEAPAVQTAADHEEDSAAGKTRYAAPALDKGLDILELLSRSEQMLTLNQIS 60 MPRTRK+NP +A VQTAA E+DS++GKTRYAAPALDKGLDILELLSRSEQMLTLNQIS Sbjct: 1 MPRTRKINPDDAATVQTAA-AEDDSSSGKTRYAAPALDKGLDILELLSRSEQMLTLNQIS 59 Query: 61 RQLGRSVNEIFRMVVTLEQRGYLVADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMREL 120 RQLGRSVNEIFRMVVTLEQRGYL+ADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMREL Sbjct: 60 RQLGRSVNEIFRMVVTLEQRGYLIADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMREL 119 Query: 121 ANRSMQSTHLTVYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAER 180 A+R++QSTHLTVYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAER Sbjct: 120 ASRAVQSTHLTVYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAER 179 Query: 181 ASMLAAHVRMDGEQEIETAQLMRQIEDTRKRGHSRMESRQIRGVINLSYPVMGANNRMLA 240 A+MLAAHVRMDGEQEIETAQLMRQIEDTRKRGHSRMESRQIRGV+NLSYPVMGANNRMLA Sbjct: 180 AAMLAAHVRMDGEQEIETAQLMRQIEDTRKRGHSRMESRQIRGVVNLSYPVMGANNRMLA 239 Query: 241 ALNVPYIERIDKKVNPSLDEVQGIVQEISARLSRLMGDSSFGS 283 ALNVPYIERIDKKVNPSLDEVQGIVQEISARLSRLMGDSSFGS Sbjct: 240 ALNVPYIERIDKKVNPSLDEVQGIVQEISARLSRLMGDSSFGS 282 >gb|EGP48463.1| IclR family transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 282 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 158/271 (58%), Positives = 210/271 (77%), Gaps = 1/271 (0%) Query: 12 APAVQTAADHEEDSAAGKTRYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIF 71 +PA T + + + G RYAAPAL+KGLDILE L+ S TL ++++++GRSV+EIF Sbjct: 7 SPADSTPTEADAADSPGAQRYAAPALEKGLDILEALAASPAGYTLAELAQKIGRSVSEIF 66 Query: 72 RMVVTLEQRGYL-VADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHL 130 RM VTL++RG++ V DND Y L+LK+FELAH QP++SLVS ALP +RELANR+ QS HL Sbjct: 67 RMAVTLQRRGFVQVDDNDRYTLTLKMFELAHRQQPLKSLVSVALPLLRELANRARQSCHL 126 Query: 131 TVYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAERASMLAAHVRM 190 VY+AGRV+V+AQVDSPERW+FGLKVG ++ LTDT+SGHVLLAFRDE ER MLAAH+++ Sbjct: 127 AVYQAGRVVVIAQVDSPERWSFGLKVGVMMGLTDTSSGHVLLAFRDEVERTRMLAAHIKV 186 Query: 191 DGEQEIETAQLMRQIEDTRKRGHSRMESRQIRGVINLSYPVMGANNRMLAALNVPYIERI 250 +GE E + +L + D RK G + M SRQIRG+ N++YPVMG N ++AA+NVP+IERI Sbjct: 187 EGELESDPGELFPILADVRKNGCACMASRQIRGITNVAYPVMGVGNHVIAAINVPHIERI 246 Query: 251 DKKVNPSLDEVQGIVQEISARLSRLMGDSSF 281 D+K +PS+ +VQ IV ++ RLS LMG S + Sbjct: 247 DRKESPSIAQVQEIVGNVAKRLSTLMGYSGY 277 >gb|EFV84592.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 282 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 159/271 (58%), Positives = 211/271 (77%), Gaps = 1/271 (0%) Query: 12 APAVQTAADHEEDSAAGKTRYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIF 71 +PA T + + A G RYAAPAL+KGLDILE L+ S TL ++++++GRSV+EIF Sbjct: 7 SPADSTPTEADAADAPGAQRYAAPALEKGLDILEALAASPAGYTLAELAQKIGRSVSEIF 66 Query: 72 RMVVTLEQRGYL-VADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHL 130 RM VTL++RG++ V DND Y L+LK+FELAH QP++SLVS ALP +RELANR+ QS HL Sbjct: 67 RMAVTLQRRGFVQVDDNDRYTLTLKMFELAHRQQPLKSLVSVALPLLRELANRARQSCHL 126 Query: 131 TVYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAERASMLAAHVRM 190 VY+AGRV+V+AQVDSPERW+FGLKVG ++ LTDT+SGHVLLAFRDE ER MLAAH+++ Sbjct: 127 AVYQAGRVVVIAQVDSPERWSFGLKVGVMMGLTDTSSGHVLLAFRDEVERTRMLAAHIKV 186 Query: 191 DGEQEIETAQLMRQIEDTRKRGHSRMESRQIRGVINLSYPVMGANNRMLAALNVPYIERI 250 +GE E + +L + D RK G + M SRQIRG+ N++YPVMG N+++AA+NVP+IERI Sbjct: 187 EGELESDPGELFPILADVRKNGCACMASRQIRGITNVAYPVMGEGNQVIAAINVPHIERI 246 Query: 251 DKKVNPSLDEVQGIVQEISARLSRLMGDSSF 281 D+K +PS+ +VQ IV ++ RLS LMG S + Sbjct: 247 DRKESPSIAQVQEIVANVAQRLSTLMGYSGY 277 >ref|YP_004234152.1| IclR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45585.1| transcriptional regulator, IclR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 273 Score = 291 bits (744), Expect = 9e-77, Method: Composition-based stats. Identities = 149/269 (55%), Positives = 201/269 (74%), Gaps = 1/269 (0%) Query: 13 PAVQTAADHEEDSAAGKTRYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFR 72 P + D + + YAAPAL+KGL ILELLS LTLN+++RQLGRSV+EIFR Sbjct: 4 PPANGSTDEDPGTRRSSPHYAAPALEKGLAILELLSSVRDGLTLNEMARQLGRSVSEIFR 63 Query: 73 MVVTLEQRGY-LVADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHLT 131 + VTL++ GY +V DN+ Y LS+K+FEL+H +RSLV+ A P ++ELA+R+ QS HL Sbjct: 64 IAVTLQRCGYVMVDDNNRYTLSIKMFELSHRQHALRSLVTVAQPLLQELAHRARQSCHLA 123 Query: 132 VYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAERASMLAAHVRMD 191 +Y+ GRV+V+AQVDSPERW+FGLK+G ++ LTDT+SGHVLLAFRDE ERA MLAAH+++D Sbjct: 124 MYQGGRVVVIAQVDSPERWSFGLKIGVMLGLTDTSSGHVLLAFRDEVERARMLAAHIKVD 183 Query: 192 GEQEIETAQLMRQIEDTRKRGHSRMESRQIRGVINLSYPVMGANNRMLAALNVPYIERID 251 GE ++ +L + R+ GH+ M SRQIR V N ++P++G +++AALNVPYIERID Sbjct: 184 GELTMDPGELFEILRQVREHGHAVMPSRQIRSVTNAAFPILGVGGQVIAALNVPYIERID 243 Query: 252 KKVNPSLDEVQGIVQEISARLSRLMGDSS 280 + NP+LDEV+GIV I+AR+S MG S Sbjct: 244 AQANPTLDEVKGIVSSIAARISTSMGYQS 272 >ref|ZP_01765900.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 305] ref|ZP_02487611.1| Transcriptional regulator, IclR family protein [Burkholderia pseudomallei 7894] ref|ZP_02493151.1| Transcriptional regulator, IclR family protein [Burkholderia pseudomallei NCTC 13177] ref|ZP_02511773.1| Transcriptional regulator, IclR family protein [Burkholderia pseudomallei BCC215] ref|ZP_03450182.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 576] ref|ZP_04522822.1| transcriptional regulator, IclR family [Burkholderia pseudomallei MSHR346] ref|ZP_04889738.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1655] gb|EBA49687.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 305] gb|EDU10722.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1655] gb|EEC37994.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 576] gb|EEP51736.1| transcriptional regulator, IclR family [Burkholderia pseudomallei MSHR346] Length = 268 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 133/231 (57%), Positives = 174/231 (75%) Query: 31 RYAAPALDKGLDILELLSRSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLVADNDHY 90 RY+APAL+KGLDI+ELL+ + L+L +++R LGR+ EIFRMVVTL+ RGYLVA ND Y Sbjct: 5 RYSAPALEKGLDIIELLANHPEGLSLVELARALGRTTAEIFRMVVTLQNRGYLVAINDRY 64 Query: 91 RLSLKLFELAHHHQPIRSLVSTALPHMRELANRSMQSTHLTVYEAGRVIVVAQVDSPERW 150 LSL LF+L+H HQP+RSLVSTALP M +LAN QS HL+VY+AGRV+++A V+SPERW Sbjct: 65 ALSLLLFQLSHRHQPVRSLVSTALPLMTQLANDVRQSFHLSVYQAGRVLIIAGVESPERW 124 Query: 151 AFGLKVGALVSLTDTASGHVLLAFRDEAERASMLAAHVRMDGEQEIETAQLMRQIEDTRK 210 F LKVG L+ +TDTASG VL+AF+ +ER MLA HV +DGE E++ L ++E R+ Sbjct: 125 GFSLKVGTLIGMTDTASGQVLMAFQQPSERERMLALHVPVDGELEVDRETLTHELEQIRQ 184 Query: 211 RGHSRMESRQIRGVINLSYPVMGANNRMLAALNVPYIERIDKKVNPSLDEV 261 G +RM SRQ++GV NL+YPV G + +A L PYI+RID P++ EV Sbjct: 185 CGFARMPSRQVKGVRNLAYPVFGRYGQAIAVLTTPYIDRIDNTKVPTIAEV 235