BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0845.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751966.1| putative porin signal peptide protein [Colli... 428 e-118 ref|YP_004752017.1| putative porin signal peptide protein [Colli... 421 e-116 ref|YP_003774468.1| outer membrane porin [Herbaspirillum seroped... 405 e-111 ref|YP_001900554.1| porin [Ralstonia pickettii 12J] >gi|18772695... 370 e-100 ref|YP_002982532.1| porin [Ralstonia pickettii 12D] >gi|24086619... 368 e-100 >ref|YP_004751966.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61143.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] Length = 357 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 240/357 (67%), Positives = 278/357 (77%), Gaps = 12/357 (3%) Query: 9 IGAKTLCALALMGAF---SAQAQAQSSVTIYGRVVAGVDFQTNAG--------TNGQGSK 57 I +KT A +L+G S QAQAQ++VTIYGRV AG+DFQ+ T GSK Sbjct: 2 ILSKTFAAASLLGLVAVASGQAQAQTNVTIYGRVDAGIDFQSGVALKDANGNQTGATGSK 61 Query: 58 WSAANNQWGTSMIGFKGTEDLGGGTNAFFLLESGFNSTTGKTNGPELFNRRSYVGLNGSA 117 + + NQWGTSM GFKGTEDLGGG AFFLLESGFN+ TG+TNG LFNRRSYVGL+GSA Sbjct: 62 FGTSGNQWGTSMFGFKGTEDLGGGLGAFFLLESGFNAPTGQTNGSALFNRRSYVGLSGSA 121 Query: 118 GSIKIGKNLFINNDVWYLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQT 177 GSIK GKNLFI NDVWYLDPTGQQ+IGTANLVKGRNW GA+N+IEYQTPTW GFNAT QT Sbjct: 122 GSIKFGKNLFIVNDVWYLDPTGQQFIGTANLVKGRNWPGANNVIEYQTPTWSGFNATVQT 181 Query: 178 SLGEKAGSTTKGRKDGVSLAYQKKGLELRAIYDVVRDANGNYDDLWKHSKELILGGTYKF 237 SLGE+AGST GR DGVSL Y GLELRAIYDV+RD NG Y D++ SK+LI+GGTY Sbjct: 182 SLGEQAGSTRNGRSDGVSLVYTNAGLELRAIYDVIRDVNGKYSDIYAASKDLIVGGTYTI 241 Query: 238 DKLKMFVGYENLKAPDVAAGTPDTVNHYWVGANYQISPALTLMGSVFHVNVNNNGGSANL 297 + LK+F YEN+ APD AG+PD + HYW+GANY ++PALTL+G FH +NN+GGS NL Sbjct: 242 NALKLFAAYENVSAPDSVAGSPDKIQHYWIGANYVLTPALTLIGGAFHAKLNNDGGSGNL 301 Query: 298 YMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 354 +M+GANYNLSKRTLLY GTVRNKGNA FS+E PLAG QNGGY+G++HSF Sbjct: 302 FMLGANYNLSKRTLLYASVGTVRNKGNADFSVEM-SGDNPLAGHSQNGGYLGVSHSF 357 >ref|YP_004752017.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61194.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] Length = 343 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 232/345 (67%), Positives = 271/345 (78%), Gaps = 12/345 (3%) Query: 19 LMGAFSAQAQAQSSVTIYGRVVAGVDFQTNAG--------TNGQGSKWSAANNQWGTSMI 70 L+GA +QAQAQ+SVTIYGRV AG+D+Q++ T G K +A+ NQWGTSMI Sbjct: 2 LIGAACSQAQAQTSVTIYGRVDAGIDYQSSVALKDANGKPTGQTGGKLAASGNQWGTSMI 61 Query: 71 GFKGTEDLGGGTNAFFLLESGFNSTTGKTNGPELFNRRSYVGLNGSAGSIKIGKNLFINN 130 GFKGTEDLGGG AFFLLESGF++T G TNG LFNRRSYVGLNG AGSIK GKNLFI N Sbjct: 62 GFKGTEDLGGGLGAFFLLESGFDATKGVTNGSALFNRRSYVGLNGGAGSIKFGKNLFIVN 121 Query: 131 DVWYLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTKGR 190 DVWYLDPTGQQ++GTA+LVKGRNW GA+N+IEYQTPTW GFNAT QTSLGE+AGS GR Sbjct: 122 DVWYLDPTGQQFMGTASLVKGRNWPGANNVIEYQTPTWSGFNATAQTSLGEQAGSAKNGR 181 Query: 191 KDGVSLAYQKKGLELRAIYDVVRDANGNYDDLWKHSKELILGGTYKFDKLKMFVGYENLK 250 DG+SL Y GLELR IYDV+RD NG Y D++ SK+LI+GGTY DKLK++ GYEN+ Sbjct: 182 SDGISLVYTNGGLELRGIYDVIRDTNGRYTDIYTASKDLIVGGTYTIDKLKLYAGYENIS 241 Query: 251 APDVAAGT-PDTVNHYWVGANYQISPALTLMGSVFHVNVNNNGGSANLYMVGANYNLSKR 309 APD AA + PD +NHYW+GANY ++PALTL+G FH +N++ GSA+L+MVGANYNLSKR Sbjct: 242 APDTAAPSDPDKLNHYWIGANYMLTPALTLIGGAFHAKINHDAGSASLFMVGANYNLSKR 301 Query: 310 TLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 354 TLLY GTVRNKGNA F E D PL G QNGGY GI+H+F Sbjct: 302 TLLYAAVGTVRNKGNADFGTEFDS---PLPGHAQNGGYAGISHTF 343 >ref|YP_003774468.1| outer membrane porin [Herbaspirillum seropedicae SmR1] gb|ADJ62560.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 355 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 250/355 (70%), Positives = 279/355 (78%), Gaps = 20/355 (5%) Query: 20 MGAFSAQAQAQ-SSVTIYGRVVAGVDFQTNA----GTNGQGSKWSAANNQWGTSMIGFKG 74 MGAFSAQAQAQ SSVTIYGRVVAGVD TN G+ G++ AA+NQWGTSMIG KG Sbjct: 1 MGAFSAQAQAQTSSVTIYGRVVAGVDIMTNVPKTDGSGTTGTRIRAASNQWGTSMIGVKG 60 Query: 75 TEDLGGGTNAFFLLESGFNSTTGKTNGPE-----LFNRRSYVGLNGS-AGSIKIGKNLFI 128 TEDLGGGTNAFFLLESGF STTG NG + LFNRRSYVGL+ + AGS+K+GKNLFI Sbjct: 61 TEDLGGGTNAFFLLESGFGSTTGGLNGTDINGTSLFNRRSYVGLSSANAGSLKLGKNLFI 120 Query: 129 NNDVWYLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTK 188 NNDVW+LDPTGQQWIGTANLV+GRNW GASN+IEY TPT+GGF AT QTSLGE AGS +K Sbjct: 121 NNDVWFLDPTGQQWIGTANLVRGRNWPGASNVIEYTTPTFGGFGATVQTSLGEAAGSFSK 180 Query: 189 G-------RKDGVSLAYQKKGLELRAIYDVVRDANGNYDDLWKHSKELILGGTYKFDKLK 241 G RKDG+SL YQ GLELR IYDV+RDANG Y D++ SKELILGGTYK DKLK Sbjct: 181 GGTSTKYGRKDGLSLVYQNNGLELRGIYDVIRDANGRYTDVYDTSKELILGGTYKIDKLK 240 Query: 242 MFVGYENLKAPD--VAAGTPDTVNHYWVGANYQISPALTLMGSVFHVNVNNNGGSANLYM 299 MF+GYENL+APD A+G PD VNHYW+GANY ++P L+GSVFHVN NN GSANL+M Sbjct: 241 MFLGYENLRAPDANTASGVPDRVNHYWLGANYDVTPQFQLVGSVFHVNANNGNGSANLFM 300 Query: 300 VGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 354 G NY LSKRTLLYVG GT+RN NA +SLEAD + G Q GGY GIAHSF Sbjct: 301 AGVNYFLSKRTLLYVGGGTMRNGNNANYSLEADSSTGGGKGTNQTGGYFGIAHSF 355 >ref|YP_001900554.1| porin [Ralstonia pickettii 12J] gb|ACD28122.1| porin Gram-negative type [Ralstonia pickettii 12J] Length = 354 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 206/344 (59%), Positives = 250/344 (72%), Gaps = 6/344 (1%) Query: 15 CALALMGAFSAQAQAQSSVTIYGRVVAGVDFQTN---AGTNGQGSKWSAANNQWGTSMIG 71 C LAL G ++A A AQ+SVT+YGRV +G+D+Q N T+ GS W AA+NQWGTSM G Sbjct: 13 CGLALAG-WTAPALAQTSVTLYGRVASGIDYQNNVAPTATSPGGSLWRAADNQWGTSMFG 71 Query: 72 FKGTEDLGGGTNAFFLLESGFNSTTGKTNGPELFNRRSYVGLNGSA-GSIKIGKNLFINN 130 F G EDLGGG A F LESGF + GKTNG LFNRRSYVGL+ G++ GKNLFI+N Sbjct: 72 FMGKEDLGGGLQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLFISN 131 Query: 131 DVWYLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTKGR 190 DVW+LDPTGQQ+IG+A LV+GRNW GA+NI+EYQ+PTWGGF QT LGE+ GS T R Sbjct: 132 DVWFLDPTGQQFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFTNSR 191 Query: 191 KDGVSLAYQKKGLELRAIYDVVRDANGNYDDLWKHSKELILGGTYKFDKLKMFVGYENLK 250 +DGVS Y LE+RAIYDV+RD NG + D++ SKE +GGTY K K+F YENL Sbjct: 192 RDGVSAVYSAGPLEVRAIYDVIRDGNGKFSDIFNFSKEATVGGTYTIGKAKLFAVYENLS 251 Query: 251 APDVAAGTPDTVNHYWVGANYQISPALTLMGSVFHVNVNNNGGSANLYMVGANYNLSKRT 310 APD AAG P NHYW+G NY+++PALTL+G+ + VNVN+ GG+ANL+M GANYNLSKRT Sbjct: 252 APDAAAGAPTKANHYWLGINYELTPALTLIGAAYRVNVNHGGGNANLFMAGANYNLSKRT 311 Query: 311 LLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 354 +LY GTV+N A FS+EA P G+ Q G Y GI HSF Sbjct: 312 MLYASVGTVQNSATANFSVEATNNNPA-PGKNQLGAYTGIVHSF 354 >ref|YP_002982532.1| porin [Ralstonia pickettii 12D] gb|ACS63860.1| porin Gram-negative type [Ralstonia pickettii 12D] Length = 358 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 205/347 (59%), Positives = 248/347 (71%), Gaps = 8/347 (2%) Query: 15 CALAL---MGAFSAQAQAQSSVTIYGRVVAGVDFQTN---AGTNGQGSKWSAANNQWGTS 68 CAL L + ++A A AQ+SVT+YGRV +G+D+Q N T GS W AA+NQWGTS Sbjct: 13 CALGLTFALAGWTAPALAQTSVTLYGRVASGIDYQNNVAPTATAPGGSLWRAADNQWGTS 72 Query: 69 MIGFKGTEDLGGGTNAFFLLESGFNSTTGKTNGPELFNRRSYVGLNGSA-GSIKIGKNLF 127 M GF G EDLGGG A F LESGF + GKTNG LFNRRSYVGL+ G++ GKNLF Sbjct: 73 MFGFMGKEDLGGGLQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLF 132 Query: 128 INNDVWYLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTT 187 I+NDVW+LDPTGQQ+IG+A LV+GRNW GA+NI+EYQ+PTWGGF QT LGE+ GS T Sbjct: 133 ISNDVWFLDPTGQQFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFT 192 Query: 188 KGRKDGVSLAYQKKGLELRAIYDVVRDANGNYDDLWKHSKELILGGTYKFDKLKMFVGYE 247 R+DGVS Y LE+RAIYDV+RD NG + D++ SKE GGTY K K+F YE Sbjct: 193 NSRRDGVSAVYSAGPLEVRAIYDVIRDGNGKFSDIFNFSKEATFGGTYTIGKAKLFAVYE 252 Query: 248 NLKAPDVAAGTPDTVNHYWVGANYQISPALTLMGSVFHVNVNNNGGSANLYMVGANYNLS 307 NL APD AAG P NHYW+G NY+++PALTL+G+ + VNVN+ GG+ANL+M GANYNLS Sbjct: 253 NLSAPDAAAGAPTKANHYWLGINYELTPALTLIGAAYRVNVNHGGGNANLFMAGANYNLS 312 Query: 308 KRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 354 KRT+LY GTV+N A FS+EA P G+ Q G Y GI HSF Sbjct: 313 KRTMLYASVGTVQNSATANFSVEATNNNPA-PGKNQLGAYTGIVHSF 358