BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0844.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774467.1| LysR family transcription regulator protein ... 587 e-166 ref|YP_004751965.1| LysR family transcriptional regulator [Colli... 449 e-124 ref|YP_982890.1| LysR family transcriptional regulator [Polaromo... 393 e-107 ref|YP_521740.1| LysR family transcriptional regulator [Rhodofer... 350 2e-94 emb|CBA30590.1| HTH-type transcriptional regulator gbpR [Curviba... 332 6e-89 >ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62559.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 305/313 (97%), Positives = 310/313 (99%) Query: 1 MKNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSL 60 MKNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGV+L Sbjct: 1 MKNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVAL 60 Query: 61 FERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLP 120 FERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVG ILSP MALLP Sbjct: 61 FERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLP 120 Query: 121 PAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPV 180 PAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILD+EARGGLLYEELADEP+ Sbjct: 121 PAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPI 180 Query: 181 CAVARVGHPFHTRTDLTLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAI 240 CAVARVGHPFH RTDL+LADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAI Sbjct: 181 CAVARVGHPFHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAI 240 Query: 241 LFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANL 300 LFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANL Sbjct: 241 LFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANL 300 Query: 301 VLQSIREVAKMIY 313 VLQ+IREVAKMIY Sbjct: 301 VLQAIREVAKMIY 313 >ref|YP_004751965.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61142.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 313 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 232/313 (74%), Positives = 260/313 (83%) Query: 1 MKNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSL 60 M +D NWFLRARLKTRQLLLLIALD+ RNIHRAA LNMTQPAASKQLKDLEDML V L Sbjct: 1 MPTNDTNWFLRARLKTRQLLLLIALDEERNIHRAAEALNMTQPAASKQLKDLEDMLDVQL 60 Query: 61 FERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLP 120 FERLPRGMRPTIYGEAMIRH+RMALTSLS AH+DI ALKSGLSGQV+VG ILSPGM LLP Sbjct: 61 FERLPRGMRPTIYGEAMIRHSRMALTSLSHAHDDITALKSGLSGQVNVGAILSPGMVLLP 120 Query: 121 PAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPV 180 PAIAR+K+QAPMLRIGVEVESSNILL RL G LDF++ RILD+E L YEEL+DEPV Sbjct: 121 PAIARLKQQAPMLRIGVEVESSNILLERLQRGSLDFLVARILDQEDNRNLEYEELSDEPV 180 Query: 181 CAVARVGHPFHTRTDLTLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAI 240 CAVARV HP ++L L D+A WI+ PKGSILR R D MF + GLAPP+NVVDTTAI Sbjct: 181 CAVARVDHPLRNVSNLQLKDIADAGWILPPKGSILRHRVDMMFHKDGLAPPANVVDTTAI 240 Query: 241 LFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANL 300 L I SLLQQTDF++ MP EVAR+Y Q ++ ILPIELPC+M GFGIITR+ +LSPGA + Sbjct: 241 LVIGSLLQQTDFLHVMPAEVARFYAQVNVLAILPIELPCKMDGFGIITRRLQILSPGAKI 300 Query: 301 VLQSIREVAKMIY 313 + Q+IREVA IY Sbjct: 301 LQQTIREVATQIY 313 >ref|YP_982890.1| LysR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gb|ABM37969.1| transcriptional regulator, LysR family [Polaromonas naphthalenivorans CJ2] Length = 320 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 205/313 (65%), Positives = 251/313 (80%) Query: 1 MKNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSL 60 M N D NW +R RLKTRQLLLL+ALD+ RN+HRA+ +NMTQPAASK LKDLED LGV L Sbjct: 1 MANHDSNWLIRTRLKTRQLLLLLALDENRNLHRASESMNMTQPAASKLLKDLEDALGVCL 60 Query: 61 FERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLP 120 FERLPRG++PT YGE MIRHARMA+TSL++AH+DI ALKSGLSGQVDVGVI++P M L+P Sbjct: 61 FERLPRGVQPTSYGETMIRHARMAITSLTQAHDDISALKSGLSGQVDVGVIMTPAMMLMP 120 Query: 121 PAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPV 180 AIA+VK +P+LRIGV++E+SN+LL RL +G LDF+I RIL++E + L YEEL EPV Sbjct: 121 SAIAQVKSASPLLRIGVQLENSNVLLERLKNGMLDFLIARILEQEDKAKLHYEELVGEPV 180 Query: 181 CAVARVGHPFHTRTDLTLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAI 240 CAVARVGHP + L L DLA +WI++P+GSILR R D MFR +GL PP+NVVDTTA+ Sbjct: 181 CAVARVGHPLQSAAQLGLRDLAPLSWILSPQGSILRHRFDMMFRREGLEPPTNVVDTTAL 240 Query: 241 LFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANL 300 L ITSLLQQTDF++ MP +VAR Y + + ILPI LPC M FGIITR+ LLSPGA + Sbjct: 241 LVITSLLQQTDFLHVMPLDVARDYQRFGQLKILPILLPCEMDAFGIITRRHQLLSPGATI 300 Query: 301 VLQSIREVAKMIY 313 +LQ+IR+ A +Y Sbjct: 301 LLQAIRQTAVRVY 313 >ref|YP_521740.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD68209.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 328 Score = 350 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 187/315 (59%), Positives = 238/315 (75%), Gaps = 2/315 (0%) Query: 1 MKNSDPNWFLRAR--LKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGV 58 M + DP+ R R LKTRQ+ LL+ALD+ RN+H+AA E NM+QPAASK LKD+E++ GV Sbjct: 14 MNDHDPDAARRTRTKLKTRQMFLLLALDEARNLHQAAKETNMSQPAASKMLKDIEELFGV 73 Query: 59 SLFERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMAL 118 F+RLPRG+RPT+YGE MIRH RMALT+LS+ + I L++GLSGQVD+GVI++P L Sbjct: 74 PFFDRLPRGVRPTLYGETMIRHVRMALTNLSQGQDSIATLQAGLSGQVDIGVIITPSTTL 133 Query: 119 LPPAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADE 178 +P AIAR K++AP L IGVEV +SN L+ RL G+LDF+I RI ++E LLYE+L++E Sbjct: 134 VPQAIARTKQEAPRLCIGVEVGTSNELVERLKRGQLDFLIARIREQEDDLDLLYEDLSEE 193 Query: 179 PVCAVARVGHPFHTRTDLTLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTT 238 CAVARVGHP R+DL L DLA+ WI++P+GSILR R D MFR L P+NVV+ T Sbjct: 194 TECAVARVGHPLLARSDLGLNDLAAAGWILSPRGSILRHRFDMMFRRIELETPANVVEAT 253 Query: 239 AILFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGA 298 AI ITSLLQQTDF++ MP EVARYY + + ILPIELPC+M FG+I R+D LLSPGA Sbjct: 254 AISVITSLLQQTDFLHVMPLEVARYYVRCSELAILPIELPCKMDSFGVIARRDQLLSPGA 313 Query: 299 NLVLQSIREVAKMIY 313 L+LQ +R +A IY Sbjct: 314 KLLLQHLRTIAAEIY 328 >emb|CBA30590.1| HTH-type transcriptional regulator gbpR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 323 Score = 332 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 174/307 (56%), Positives = 226/307 (73%) Query: 7 NWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSLFERLPR 66 +WFLRARLKTRQLLLL+AL + NIHRAA LNMTQPAASK LKDLED+LGVSLFERLPR Sbjct: 6 HWFLRARLKTRQLLLLVALAEEGNIHRAAQVLNMTQPAASKLLKDLEDVLGVSLFERLPR 65 Query: 67 GMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLPPAIARV 126 GMRPT YG+ MIRHAR AL SL++AHE++ A K+G GQV++G I +PG+ALLPP +A V Sbjct: 66 GMRPTWYGDTMIRHARAALASLNQAHEELQAAKNGQFGQVNLGSITAPGLALLPPTVAAV 125 Query: 127 KEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPVCAVARV 186 K+ P L+I +++E SN+L+ +L G LD ++GR+ E + L YE +A+EP+CAVAR Sbjct: 126 KQAHPNLQITIQIEPSNVLIEKLNRGSLDILVGRLSPEHDKAALRYEMVAEEPICAVARP 185 Query: 187 GHPFHTRTDLTLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSL 246 GHP T TL D+ WI+ P GS+LR R D M +E GL PSN V+T+A+LFI+ + Sbjct: 186 GHPLLTAIKPTLEDVFKYGWIVPPAGSMLRHRFDLMIQELGLEQPSNSVETSALLFISKM 245 Query: 247 LQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVLQSIR 306 +QQ+D + M +VARYY LM ILP+ +PC M FG ITR+D LLSP A +VL++++ Sbjct: 246 MQQSDMVSVMAVDVARYYANHGLMSILPVAMPCEMEPFGFITRRDRLLSPAAEVVLRALK 305 Query: 307 EVAKMIY 313 A +Y Sbjct: 306 SSAMTVY 312