BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0841.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774464.1| sugar ABC transporter permease [Herbaspirill... 642 0.0 ref|YP_004751960.1| l-arabinose transport system permease [Colli... 531 e-149 ref|YP_001834122.1| monosaccharide-transporting ATPase [Beijerin... 503 e-140 ref|YP_001792221.1| monosaccharide-transporting ATPase [Leptothr... 495 e-138 emb|CBA30596.1| Xylose transport system permease protein xylH [C... 485 e-135 >ref|YP_003774464.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62556.1| ABC-type sugar transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 390/405 (96%), Positives = 394/405 (97%), Gaps = 2/405 (0%) Query: 1 MESIDMSKKPAVASGAV--EKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPL 58 MESIDMSKKPA A+ EKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPL Sbjct: 1 MESIDMSKKPAAAAAGGAAEKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPL 60 Query: 59 NLTNLVLQNSYIVIMALGMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIV 118 NLTNLVLQNSYIVIMALGMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIV Sbjct: 61 NLTNLVLQNSYIVIMALGMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIV 120 Query: 119 CLIAGALIGAAQGYWIAYFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSG 178 CLIAG LIGAAQGYWIAYFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSG Sbjct: 121 CLIAGGLIGAAQGYWIAYFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSG 180 Query: 179 FIPELTDNTTFRTTSLIVGIIAAVVLILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIA 238 FIPELT NTTFRTTSLIVG+IAAVVLILVKLHGRRKQTKHGMEDEP +FFLLKNGVFA A Sbjct: 181 FIPELTGNTTFRTTSLIVGVIAAVVLILVKLHGRRKQTKHGMEDEPVLFFLLKNGVFAAA 240 Query: 239 IIAFSYLLSTYRGMPNVLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTER 298 IIAFSYLLSTYRGMPNVLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTER Sbjct: 241 IIAFSYLLSTYRGMPNVLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTER 300 Query: 299 VSFFTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGA 358 VSFFTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGA Sbjct: 301 VSFFTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGA 360 Query: 359 VIGAFIMGVMNNGMSIMGIGIDYQQMIKGLVLLMAVCFDVYNKNK 403 VIGAF+MGVMNNGMSIMGIGIDYQQMIKG VLLMAVCFDVYNKNK Sbjct: 361 VIGAFVMGVMNNGMSIMGIGIDYQQMIKGFVLLMAVCFDVYNKNK 405 >ref|YP_004751960.1| l-arabinose transport system permease [Collimonas fungivorans Ter331] gb|AEK61137.1| L-arabinose transport system permease protein [Collimonas fungivorans Ter331] Length = 405 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 314/388 (80%), Positives = 349/388 (89%) Query: 16 AVEKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMAL 75 A EKK+Y FLKNNMREYGMLMSL+AIMAFFQ MT+GTLM+PLNLTNLVLQNSYIVIMAL Sbjct: 18 AAEKKEYNGFLKNNMREYGMLMSLIAIMAFFQYMTNGTLMQPLNLTNLVLQNSYIVIMAL 77 Query: 76 GMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGALIGAAQGYWIA 135 GMLMVIVAGHIDLSVGSVVG IGALAAVL+V+ FV ASI+C++AGA+IGAAQGYW+A Sbjct: 78 GMLMVIVAGHIDLSVGSVVGFIGALAAVLIVNLHMNFVLASILCILAGAVIGAAQGYWVA 137 Query: 136 YFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELTDNTTFRTTSLI 195 +FKIPSFIVTLAGMLVFKG+ LALLQGQS+GPFP FQMLSSGFIP+L R TSL+ Sbjct: 138 FFKIPSFIVTLAGMLVFKGLTLALLQGQSIGPFPDDFQMLSSGFIPDLFSAADLRITSLL 197 Query: 196 VGIIAAVVLILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIAIIAFSYLLSTYRGMPNV 255 VG+ A ++I VK+ R KQTKHGMEDEP +FF+LKN VFA II FSYLL++Y+GMPNV Sbjct: 198 VGVAVAAIMIFVKVRARTKQTKHGMEDEPYVFFILKNAVFAAVIIFFSYLLASYKGMPNV 257 Query: 256 LIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALAG 315 LIIMF LMV+YTF+ +RTT+GRR+YAVGGNEKAAKLSGIKT RVSF+TF+NMG+LAALAG Sbjct: 258 LIIMFLLMVVYTFVANRTTIGRRIYAVGGNEKAAKLSGIKTSRVSFYTFINMGMLAALAG 317 Query: 316 LIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSIM 375 LIFAARLNTATPKAG GFELDVIAACFIGGASASGGVGKVMGAVIGAF+MGVMNNGMSIM Sbjct: 318 LIFAARLNTATPKAGTGFELDVIAACFIGGASASGGVGKVMGAVIGAFVMGVMNNGMSIM 377 Query: 376 GIGIDYQQMIKGLVLLMAVCFDVYNKNK 403 GIGIDYQQ+IKGLVLL AV DVYNKNK Sbjct: 378 GIGIDYQQVIKGLVLLAAVFVDVYNKNK 405 >ref|YP_001834122.1| monosaccharide-transporting ATPase [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB96633.1| Monosaccharide-transporting ATPase [Beijerinckia indica subsp. indica ATCC 9039] Length = 396 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 284/387 (73%), Positives = 332/387 (85%), Gaps = 1/387 (0%) Query: 18 EKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMALGM 77 EK + SFLK+N+REYGML+SL AIM FF++MT GTL+RPLNLTNLVLQNSYIVIMALGM Sbjct: 10 EKPIHISFLKDNLREYGMLLSLFAIMLFFEVMTQGTLLRPLNLTNLVLQNSYIVIMALGM 69 Query: 78 LMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGALIGAAQGYWIAYF 137 L+VIV GHIDLSVGSV G IGA+AAVLMV Y FVPAS++CL+ G LIGAAQGYW+AYF Sbjct: 70 LLVIVTGHIDLSVGSVAGFIGAVAAVLMVHYHLPFVPASLICLVLGGLIGAAQGYWVAYF 129 Query: 138 KIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPEL-TDNTTFRTTSLIV 196 KIPSFIVTLAGMLVFKG+ALA+LQGQS+GPFPQTFQ LSSGFIPE+ TD T TSL++ Sbjct: 130 KIPSFIVTLAGMLVFKGLALAILQGQSVGPFPQTFQKLSSGFIPEVFTDTGTLYPTSLLM 189 Query: 197 GIIAAVVLILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIAIIAFSYLLSTYRGMPNVL 256 G A+VL+ R +Q H + EP FF+ KN V ++ F+YL++++RG+PNVL Sbjct: 190 GAAVALVLVYTNYKNRARQLSHDINVEPNGFFIFKNLVLFAVVLYFTYLIASHRGLPNVL 249 Query: 257 IIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALAGL 316 +IM AL+ LY F+TSRTT+GR++YA+GGNEKAAKLSGIKTER++F TFVNMGVL+ALAGL Sbjct: 250 VIMMALIALYGFLTSRTTIGRQIYAIGGNEKAAKLSGIKTERLTFLTFVNMGVLSALAGL 309 Query: 317 IFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSIMG 376 +FAARLNTATPKAGLGFELDVIAACFIGGASA GGVG+V GAVIGA IMGVMNNGMSI+G Sbjct: 310 VFAARLNTATPKAGLGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILG 369 Query: 377 IGIDYQQMIKGLVLLMAVCFDVYNKNK 403 IGIDYQQ+IKGLVLL AVCFDVYN+ + Sbjct: 370 IGIDYQQVIKGLVLLGAVCFDVYNQKR 396 >ref|YP_001792221.1| monosaccharide-transporting ATPase [Leptothrix cholodnii SP-6] gb|ACB35456.1| Monosaccharide-transporting ATPase [Leptothrix cholodnii SP-6] Length = 414 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 296/389 (76%), Positives = 338/389 (86%) Query: 15 GAVEKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMA 74 GA K F+K+N REYGML+SLVAIMAFFQ+MTDGTLM+PLNLTNLVLQNSYIVIMA Sbjct: 24 GAAGSKSALDFIKSNFREYGMLLSLVAIMAFFQVMTDGTLMQPLNLTNLVLQNSYIVIMA 83 Query: 75 LGMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGALIGAAQGYWI 134 LGML+VIVAGHIDLSVGSV G IGALAAVLMV++ W ++ A++VCL+ G LIGAAQGY++ Sbjct: 84 LGMLLVIVAGHIDLSVGSVCGFIGALAAVLMVNHEWHYLSATLVCLVVGGLIGAAQGYFV 143 Query: 135 AYFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELTDNTTFRTTSL 194 A+F+IPSFIVTLAGMLVFKG+ALALL GQS+GPFP+TFQ LSSGFIP+L + R TSL Sbjct: 144 AFFRIPSFIVTLAGMLVFKGLALALLNGQSVGPFPETFQALSSGFIPDLFSTESLRLTSL 203 Query: 195 IVGIIAAVVLILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIAIIAFSYLLSTYRGMPN 254 ++G A L L L R Q KHG+E EPA FF K GVFA +I FSY+L++Y+G+PN Sbjct: 204 LIGAAVAGALALASLRSRGNQIKHGIEAEPAGFFFAKIGVFAAMLIYFSYMLASYKGLPN 263 Query: 255 VLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALA 314 VLI+M L+ L+ F+TSRTT+GRRVYA+GGNEKAAKLSGIKTER+SF+TFVNMGVLAALA Sbjct: 264 VLIVMALLIGLFDFVTSRTTIGRRVYALGGNEKAAKLSGIKTERLSFYTFVNMGVLAALA 323 Query: 315 GLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSI 374 GL+FAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSI Sbjct: 324 GLVFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSI 383 Query: 375 MGIGIDYQQMIKGLVLLMAVCFDVYNKNK 403 +GIGIDYQQ+IKGLVLL AV DVYNKNK Sbjct: 384 LGIGIDYQQVIKGLVLLAAVFVDVYNKNK 412 >emb|CBA30596.1| Xylose transport system permease protein xylH [Curvibacter putative symbiont of Hydra magnipapillata] Length = 397 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 277/380 (72%), Positives = 338/380 (88%) Query: 24 SFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPLNLTNLVLQNSYIVIMALGMLMVIVA 83 +FLK+N+REYG+L+SLV IM FFQ+ TDGTL +PLNLTNL+LQNSYI++MALGML+VIVA Sbjct: 18 AFLKSNLREYGLLISLVIIMVFFQVKTDGTLFQPLNLTNLILQNSYIIVMALGMLLVIVA 77 Query: 84 GHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIVCLIAGALIGAAQGYWIAYFKIPSFI 143 GHIDLSVGSV G +GA+AAVLMV+Y W +VPA+IVCLI G +IGAAQGYW+A++KIPSFI Sbjct: 78 GHIDLSVGSVCGFVGAVAAVLMVNYNWHYVPAAIVCLILGGVIGAAQGYWVAFYKIPSFI 137 Query: 144 VTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSGFIPELTDNTTFRTTSLIVGIIAAVV 203 VTLAGMLVFKG+ALA+L+G S+GPFP FQ+LS+GFIP+ T R +L++G++ A+V Sbjct: 138 VTLAGMLVFKGLALAVLEGASVGPFPPEFQLLSTGFIPDPFAGETLRVATLVIGLLIALV 197 Query: 204 LILVKLHGRRKQTKHGMEDEPAMFFLLKNGVFAIAIIAFSYLLSTYRGMPNVLIIMFALM 263 +++ K+ GR + HGME+EP +FF + N +F I+AFSY L++Y+G+PNVL++M LM Sbjct: 198 MLITKVRGRADRAAHGMENEPVLFFAIANLIFIGMIVAFSYQLASYKGLPNVLVVMLLLM 257 Query: 264 VLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTERVSFFTFVNMGVLAALAGLIFAARLN 323 + Y F+ SRTT+GRR+YA+GGNEKAAKLSGI+TER++F+TF+NMGVLAALAGLIFAARLN Sbjct: 258 LAYDFVASRTTIGRRIYALGGNEKAAKLSGIRTERLTFYTFINMGVLAALAGLIFAARLN 317 Query: 324 TATPKAGLGFELDVIAACFIGGASASGGVGKVMGAVIGAFIMGVMNNGMSIMGIGIDYQQ 383 TATPKAGLGFELDVIAACFIGGASASGGVGKV+GAVIGAFIMGVMNNGMSIMGIGIDYQQ Sbjct: 318 TATPKAGLGFELDVIAACFIGGASASGGVGKVLGAVIGAFIMGVMNNGMSIMGIGIDYQQ 377 Query: 384 MIKGLVLLMAVCFDVYNKNK 403 +IKGLVLL AVCFDVYNKNK Sbjct: 378 VIKGLVLLAAVCFDVYNKNK 397