BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0840.p (518 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774463.1| sugar ABC transporter ATPase [Herbaspirillum... 964 0.0 ref|YP_004751959.1| sugar ABC transporter [Collimonas fungivoran... 763 0.0 ref|YP_004153444.1| ABC transporter [Variovorax paradoxus EPS] >... 738 0.0 ref|YP_002942963.1| ABC transporter [Variovorax paradoxus S110] ... 733 0.0 emb|CBA30594.1| L-arabinose transport ATP-binding protein araG [... 728 0.0 >ref|YP_003774463.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ62555.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 518 Score = 964 bits (2492), Expect = 0.0, Method: Composition-based stats. Identities = 509/518 (98%), Positives = 517/518 (99%) Query: 1 MSNILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYS 60 MSNILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYS Sbjct: 1 MSNILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYS 60 Query: 61 GDIVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSY 120 GDIVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSY Sbjct: 61 GDIVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSY 120 Query: 121 VRAKELLAKVGLKESPLTKVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDA 180 VRAKELLAKVGLKESPLT+VGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDA Sbjct: 121 VRAKELLAKVGLKESPLTQVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDA 180 Query: 181 LLELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHM 240 LLELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHM Sbjct: 181 LLELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHM 240 Query: 241 VGREMADRYPQRDPKIGDVIFEVRDWRVHHPLHSDRLAIKDVNMTVRAGEIVGIAGLMGA 300 VGREMADRYPQRDP+IG+VIFEVRDWRVHHPLH+DRLAIKDVNM+VRAGEIVGIAGLMGA Sbjct: 241 VGREMADRYPQRDPQIGEVIFEVRDWRVHHPLHTDRLAIKDVNMSVRAGEIVGIAGLMGA 300 Query: 301 GRTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIDKGIAYVTEDRKGDGLVLEEDI 360 GRTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAI KGIAYVTEDRKGDGLVLEEDI Sbjct: 301 GRTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIAKGIAYVTEDRKGDGLVLEEDI 360 Query: 361 KKNISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSK 420 KKNISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSK Sbjct: 361 KKNISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSK 420 Query: 421 WLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVM 480 WLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVM Sbjct: 421 WLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVM 480 Query: 481 NEGQFVGHLPKAEATQESIMRAIMRNKRIDDPGLSQAA 518 NEGQFVGHLPKAEATQE+IMRAIMRNKRID+PGLS+AA Sbjct: 481 NEGQFVGHLPKAEATQENIMRAIMRNKRIDEPGLSKAA 518 >ref|YP_004751959.1| sugar ABC transporter [Collimonas fungivorans Ter331] gb|AEK61136.1| Sugar ABC transporter [Collimonas fungivorans Ter331] Length = 512 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 393/511 (76%), Positives = 451/511 (88%) Query: 1 MSNILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYS 60 M ILEMRGI K+FPGVKAL+NVNLAVR GEIHA+VGENGAGKSTLMKVLSGVYPHGSY+ Sbjct: 1 METILEMRGIGKTFPGVKALDNVNLAVRNGEIHAVVGENGAGKSTLMKVLSGVYPHGSYT 60 Query: 61 GDIVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSY 120 G+I ++G R F I DSE +GIIIIHQELALVPLLS+ EN+FLGNEQA GVIDWE SY Sbjct: 61 GEIRFEGMARQFDGIADSEKIGIIIIHQELALVPLLSITENIFLGNEQATNGVIDWEVSY 120 Query: 121 VRAKELLAKVGLKESPLTKVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDA 180 + KELLAKVGLKESP T + +LGVGKQQLIEIAKALSK+VKLLILDEPTASLNESDSDA Sbjct: 121 AKTKELLAKVGLKESPSTLITNLGVGKQQLIEIAKALSKQVKLLILDEPTASLNESDSDA 180 Query: 181 LLELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHM 240 LL+LLLELK QGI+SILISHKLNEISKVADSIT+LRDG+TVDT DC E ISEDRIIQ+M Sbjct: 181 LLDLLLELKAQGISSILISHKLNEISKVADSITILRDGSTVDTLDCHKEVISEDRIIQNM 240 Query: 241 VGREMADRYPQRDPKIGDVIFEVRDWRVHHPLHSDRLAIKDVNMTVRAGEIVGIAGLMGA 300 VGREMADRYP+R P IG+ IFEV+ W VHHP+H +R IK V+ V+ GEIVGIAGLMGA Sbjct: 241 VGREMADRYPKRSPDIGETIFEVKQWSVHHPIHPERQVIKGVDFHVKKGEIVGIAGLMGA 300 Query: 301 GRTELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIDKGIAYVTEDRKGDGLVLEEDI 360 GRTELA SIFGRAYG++I+G+ FL GKE+D+S ++KAID GIAYVTEDRKG GL+L++DI Sbjct: 301 GRTELAMSIFGRAYGQRISGKVFLRGKEIDVSNVQKAIDNGIAYVTEDRKGYGLILDQDI 360 Query: 361 KKNISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSK 420 KKNI+LANL G+++ +VIDE REY +AAD+++Q++IRCS+V QKV+NLSGGNQQKVVLSK Sbjct: 361 KKNITLANLNGIADSSVIDEGREYAVAADYRRQLKIRCSNVFQKVLNLSGGNQQKVVLSK 420 Query: 421 WLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVM 480 WLFS P+VLILDEPTRGIDVGAK+EIY II +LA EGKCIIMISSEMPELLGMCDRIYVM Sbjct: 421 WLFSNPDVLILDEPTRGIDVGAKYEIYTIIDQLAREGKCIIMISSEMPELLGMCDRIYVM 480 Query: 481 NEGQFVGHLPKAEATQESIMRAIMRNKRIDD 511 NEG+FVG + AEA+QE IMRAI+RN + D Sbjct: 481 NEGKFVGEMAAAEASQEKIMRAIVRNVKNGD 511 >ref|YP_004153444.1| ABC transporter [Variovorax paradoxus EPS] gb|ADU35333.1| ABC transporter related protein [Variovorax paradoxus EPS] Length = 521 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 385/501 (76%), Positives = 438/501 (87%) Query: 4 ILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGDI 63 ILEMRGI K+FPGVKAL+NVNLAVR GEIHA+VGENGAGKSTLMKVLSGVYP SY+G+I Sbjct: 11 ILEMRGITKTFPGVKALSNVNLAVRAGEIHAVVGENGAGKSTLMKVLSGVYPCDSYTGEI 70 Query: 64 VYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSYVRA 123 ++GE+R FK I DSE LGIIIIHQELALVPLLS+ ENLFLGNE A GGVIDW +Y R Sbjct: 71 HFEGELRRFKTIADSEKLGIIIIHQELALVPLLSIAENLFLGNEIASGGVIDWFAAYART 130 Query: 124 KELLAKVGLKESPLTKVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALLE 183 +ELLAKVGLKE P T V DLGVGKQQL+EIAKAL+KEVKLLILDEPTASLNE+DSDALL Sbjct: 131 RELLAKVGLKELPTTLVTDLGVGKQQLVEIAKALAKEVKLLILDEPTASLNENDSDALLM 190 Query: 184 LLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHMVGR 243 LLLELKRQGIASILISHKLNEI+KVADSITVLRDG TV+T DCR++PISEDRII+ MVGR Sbjct: 191 LLLELKRQGIASILISHKLNEIAKVADSITVLRDGATVETIDCRSDPISEDRIIRGMVGR 250 Query: 244 EMADRYPQRDPKIGDVIFEVRDWRVHHPLHSDRLAIKDVNMTVRAGEIVGIAGLMGAGRT 303 +M RYPQR PKIG+ +FEVRDWRVHH LH+DR IK VN+ VR GEIVGIAGLMGAGRT Sbjct: 251 DMEHRYPQRSPKIGETVFEVRDWRVHHALHADREQIKGVNLHVRQGEIVGIAGLMGAGRT 310 Query: 304 ELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIDKGIAYVTEDRKGDGLVLEEDIKKN 363 ELA S+FG++YG++I+G +HGK VD+ST+ KAID GIAYVTEDRKG GLVLEE I+KN Sbjct: 311 ELAMSVFGKSYGQRISGSVLMHGKPVDVSTVRKAIDHGIAYVTEDRKGLGLVLEEGIRKN 370 Query: 364 ISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSKWLF 423 ISLANL +SER+VID+ RE+K+A D+++ + IRCS V Q VVNLSGGNQQKVVLSKWLF Sbjct: 371 ISLANLDAISERSVIDDGREFKVANDYRKALNIRCSGVEQLVVNLSGGNQQKVVLSKWLF 430 Query: 424 SQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVMNEG 483 ++PE+LILDEPTRGIDVGAK+EIY II +LA EGK I+MISSE+PELLGMCDRIYVMNEG Sbjct: 431 TKPELLILDEPTRGIDVGAKYEIYTIIDQLANEGKGILMISSELPELLGMCDRIYVMNEG 490 Query: 484 QFVGHLPKAEATQESIMRAIM 504 +FV AEA+QE IM AI+ Sbjct: 491 RFVAEFTAAEASQERIMHAIV 511 >ref|YP_002942963.1| ABC transporter [Variovorax paradoxus S110] gb|ACS17697.1| ABC transporter related [Variovorax paradoxus S110] Length = 521 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 380/502 (75%), Positives = 441/502 (87%) Query: 3 NILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGD 62 +ILEMRGI K+FPGVKAL++VNLAVR GEIHA+VGENGAGKSTLMKVLSGVYP SY+G+ Sbjct: 10 SILEMRGITKTFPGVKALSDVNLAVRAGEIHAVVGENGAGKSTLMKVLSGVYPCDSYTGE 69 Query: 63 IVYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSYVR 122 I ++GE+R F+ I DSE LGIIIIHQELALVPLLS+ EN+FLGNE ARGGVIDW +Y + Sbjct: 70 IHFEGELRRFRSIADSEKLGIIIIHQELALVPLLSIAENIFLGNEIARGGVIDWFAAYAK 129 Query: 123 AKELLAKVGLKESPLTKVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALL 182 +ELLAKVGLKE P T V DLGVGKQQL+EIAKAL+KEVKLLILDEPTASLNE+DSDALL Sbjct: 130 TRELLAKVGLKEPPTTLVTDLGVGKQQLVEIAKALAKEVKLLILDEPTASLNENDSDALL 189 Query: 183 ELLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHMVG 242 LLLELKRQGIASILISHKLNEI+KVADSITVLRDG TV+T DCR +PISEDRII+ MVG Sbjct: 190 MLLLELKRQGIASILISHKLNEIAKVADSITVLRDGATVETMDCRGQPISEDRIIRGMVG 249 Query: 243 REMADRYPQRDPKIGDVIFEVRDWRVHHPLHSDRLAIKDVNMTVRAGEIVGIAGLMGAGR 302 R+MA RYPQRDPKIG+ +FEVRDWRVHH LH+DR IK V++ VR GEIVGIAGLMGAGR Sbjct: 250 RDMAHRYPQRDPKIGETVFEVRDWRVHHALHADREQIKGVDLHVRKGEIVGIAGLMGAGR 309 Query: 303 TELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIDKGIAYVTEDRKGDGLVLEEDIKK 362 TELA S+FG++YG++I+G +HG+ VD+ T+ KAID GIAYVTEDRKG GLVLEE+I+K Sbjct: 310 TELAMSVFGKSYGQRISGTVLMHGQPVDVGTVRKAIDHGIAYVTEDRKGLGLVLEENIQK 369 Query: 363 NISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSKWL 422 N+SLANL VS VID+ARE+K+A+D+++ + IR S V Q VVNLSGGNQQKVVLSKWL Sbjct: 370 NVSLANLEAVSSSMVIDDAREFKVASDYRRALNIRSSGVEQLVVNLSGGNQQKVVLSKWL 429 Query: 423 FSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVMNE 482 F++PE+LILDEPTRGIDVGAK+EIY II +LA+EGK I+MISSE+PELLGMCDRIYVMNE Sbjct: 430 FTKPELLILDEPTRGIDVGAKYEIYTIIDQLASEGKGILMISSELPELLGMCDRIYVMNE 489 Query: 483 GQFVGHLPKAEATQESIMRAIM 504 G+FV P AEA+QE IM AI+ Sbjct: 490 GRFVAEFPAAEASQERIMHAIV 511 >emb|CBA30594.1| L-arabinose transport ATP-binding protein araG [Curvibacter putative symbiont of Hydra magnipapillata] Length = 510 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 373/501 (74%), Positives = 430/501 (85%) Query: 4 ILEMRGIEKSFPGVKALNNVNLAVREGEIHAIVGENGAGKSTLMKVLSGVYPHGSYSGDI 63 ILEMRG+ K+F GV AL+NVNL V+EG+IHAIVGENGAGKSTLMKVLSGVYP+G Y G I Sbjct: 5 ILEMRGMRKTFHGVTALSNVNLTVQEGQIHAIVGENGAGKSTLMKVLSGVYPYGDYEGTI 64 Query: 64 VYKGEVRAFKDIRDSEHLGIIIIHQELALVPLLSVMENLFLGNEQARGGVIDWEQSYVRA 123 Y+GE F+ I DSE GIIIIHQELALVPLLS+ EN+FLGNEQA+GGVIDW SYV+ Sbjct: 65 RYQGEECRFRGIHDSEEKGIIIIHQELALVPLLSITENIFLGNEQAKGGVIDWNTSYVKT 124 Query: 124 KELLAKVGLKESPLTKVGDLGVGKQQLIEIAKALSKEVKLLILDEPTASLNESDSDALLE 183 + LL KVGLKESP T + +LGVGKQQLIEIAKALSKEVKLLILDEPTASLNE+DSDALLE Sbjct: 125 QALLKKVGLKESPNTLITNLGVGKQQLIEIAKALSKEVKLLILDEPTASLNETDSDALLE 184 Query: 184 LLLELKRQGIASILISHKLNEISKVADSITVLRDGTTVDTFDCRAEPISEDRIIQHMVGR 243 LLLELKRQGI+ ILISHKLNEISKVAD+ITVLRDG TV + DCRAEP+SED II+HMVGR Sbjct: 185 LLLELKRQGISCILISHKLNEISKVADAITVLRDGATVASLDCRAEPVSEDLIIRHMVGR 244 Query: 244 EMADRYPQRDPKIGDVIFEVRDWRVHHPLHSDRLAIKDVNMTVRAGEIVGIAGLMGAGRT 303 EMADRYP+R P +GD +FEVRDW VHH +H +R IK VN+ V+ GEIVGIAGLMGAGRT Sbjct: 245 EMADRYPKRTPNVGDTVFEVRDWVVHHAIHPERKVIKGVNLHVKRGEIVGIAGLMGAGRT 304 Query: 304 ELAKSIFGRAYGKKITGQAFLHGKEVDLSTIEKAIDKGIAYVTEDRKGDGLVLEEDIKKN 363 ELA SIFGR YG+ I+G+ L+GKEVD ST++KAID+GIAYVTEDRKG GLVL+E I N Sbjct: 305 ELAMSIFGRTYGQNISGKVLLNGKEVDTSTVQKAIDQGIAYVTEDRKGYGLVLDETIAWN 364 Query: 364 ISLANLGGVSERTVIDEAREYKIAADFKQQMRIRCSSVLQKVVNLSGGNQQKVVLSKWLF 423 +LANL VS +TV+DE +E+ +A DF++++ IR +V + VNLSGGNQQKVVLSKWLF Sbjct: 365 TTLANLSAVSTKTVVDEGKEFSVAQDFRKKLNIRSPNVFARTVNLSGGNQQKVVLSKWLF 424 Query: 424 SQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVMNEG 483 S+PEVLILDEPTRGIDVGAK+EIY II++LAAEGKC++MISSEMPELLGMCDRI V+NEG Sbjct: 425 SEPEVLILDEPTRGIDVGAKYEIYTIIAQLAAEGKCVLMISSEMPELLGMCDRICVLNEG 484 Query: 484 QFVGHLPKAEATQESIMRAIM 504 FV P AEATQE IMR+I+ Sbjct: 485 AFVAEFPAAEATQEKIMRSIV 505