BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0839.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774462.1| sugar ABC transporter periplasmic protein [H... 669 0.0 ref|YP_004751958.1| sugar ABC transporter periplasmic sugar-bind... 555 e-156 ref|ZP_08406865.1| sugar ABC transporter periplasmic sugar-bindi... 537 e-151 ref|YP_002942962.1| sugar ABC transporter periplasmic sugar-bind... 536 e-150 ref|YP_004153443.1| sugar ABC transporter periplasmic sugar-bind... 534 e-150 >ref|YP_003774462.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62554.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 357 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 355/357 (99%), Positives = 357/357 (100%) Query: 1 MKIKSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKG 60 MKIKSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKG Sbjct: 1 MKIKSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKG 60 Query: 61 YQTDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRL 120 YQTDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRL Sbjct: 61 YQTDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRL 120 Query: 121 IRGSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGA 180 IRGSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGA Sbjct: 121 IRGSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGA 180 Query: 181 MSVLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAFYTNAKVNAVLSPYD 240 MSVLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSA+YTNAKVNAVLSPYD Sbjct: 181 MSVLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAYYTNAKVNAVLSPYD 240 Query: 241 GLSIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVG 300 GLSIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVG Sbjct: 241 GLSIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVG 300 Query: 301 MVDAVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQLK 357 MVDAVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKE+LVGSGYYTEAQLK Sbjct: 301 MVDAVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEVLVGSGYYTEAQLK 357 >ref|YP_004751958.1| sugar ABC transporter periplasmic sugar-binding protein [Collimonas fungivorans Ter331] gb|AEK61135.1| sugar ABC transporter, periplasmic sugar-binding protein [Collimonas fungivorans Ter331] Length = 354 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 284/346 (82%), Positives = 314/346 (90%) Query: 12 LGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKGYQTDLQYAEDD 71 +GL + + +Q AQ K +G++MPTKSSARWIADG+NMVKV KEKGY+TDLQYAEDD Sbjct: 9 VGLLIGAFGLVSQAGAQEKGPIGISMPTKSSARWIADGDNMVKVFKEKGYKTDLQYAEDD 68 Query: 72 IPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIRGSKNVDYYA 131 IPNQL+QIENM+TKG KVLVIAAIDGTTL++ LQKAADKG+KVIAYDRLIRGSKNVDYYA Sbjct: 69 IPNQLAQIENMVTKGVKVLVIAAIDGTTLSNALQKAADKGIKVIAYDRLIRGSKNVDYYA 128 Query: 132 TFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSG 191 TFDNFQVGVLQA +EK LGLKEGKGPFNIELFGGS+DDNNAFFFYNGAMSVL+PYID G Sbjct: 129 TFDNFQVGVLQASYIEKTLGLKEGKGPFNIELFGGSADDNNAFFFYNGAMSVLQPYIDKG 188 Query: 192 KLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAFYTNAKVNAVLSPYDGLSIGILSSLR 251 KLVVRSKQ GMDKV+TLRWD A AQARMDNLLSA+Y NA V+AVLSPYDG+SIGILSSL+ Sbjct: 189 KLVVRSKQTGMDKVSTLRWDGAVAQARMDNLLSAYYGNAHVDAVLSPYDGISIGILSSLK 248 Query: 252 GVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVDAVLGGKQP 311 GVGYGTP+QP P V+GQDAEVPSVKSI+RGEQ T+FKDTRELAKVTVGMVDA+L GK P Sbjct: 249 GVGYGTPKQPMPIVTGQDAEVPSVKSIVRGEQRQTVFKDTRELAKVTVGMVDAMLSGKAP 308 Query: 312 QINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQLK 357 INDTKTYNNGVKVVPSYLLKPV VD SNWK++LVGSGYYTEAQ+K Sbjct: 309 AINDTKTYNNGVKVVPSYLLKPVSVDVSNWKQVLVGSGYYTEAQIK 354 >ref|ZP_08406865.1| sugar ABC transporter periplasmic sugar-binding protein [Hylemonella gracilis ATCC 19624] gb|EGI76031.1| sugar ABC transporter periplasmic sugar-binding protein [Hylemonella gracilis ATCC 19624] Length = 359 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 276/355 (77%), Positives = 316/355 (89%), Gaps = 1/355 (0%) Query: 3 IKSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKGYQ 62 ++++++ +ALG + + ++ SAQ K +G++MPTKSS+RWIADG+NMVKVLK +GY+ Sbjct: 6 LQALVATLALGT-LGALGLAHTASAQDKGSIGISMPTKSSSRWIADGDNMVKVLKARGYR 64 Query: 63 TDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIR 122 T+LQYAEDDIPNQL+QIENM+TKG KVLVIA+IDGTTL+ VLQ AADKG+KVIAYDRLI+ Sbjct: 65 TELQYAEDDIPNQLAQIENMITKGVKVLVIASIDGTTLSRVLQNAADKGIKVIAYDRLIK 124 Query: 123 GSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMS 182 GSKNVDYYATFDNFQVGVLQA S+ LGLK+GKGPFNIELFGGS DDNNA+FFY+GAMS Sbjct: 125 GSKNVDYYATFDNFQVGVLQATSIVDKLGLKQGKGPFNIELFGGSPDDNNAYFFYDGAMS 184 Query: 183 VLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAFYTNAKVNAVLSPYDGL 242 VL+PYIDSGKLVVRSKQ GM+KV TLRWD A AQARMDNLLSAFY KV+AVLSPYDGL Sbjct: 185 VLQPYIDSGKLVVRSKQTGMNKVGTLRWDGAVAQARMDNLLSAFYGKDKVHAVLSPYDGL 244 Query: 243 SIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMV 302 SIGILSSL+GVGY T QQP P VSGQDAE+PSVKSI+RGEQ+ST+FKDTRELAKV MV Sbjct: 245 SIGILSSLKGVGYCTAQQPCPVVSGQDAEIPSVKSILRGEQHSTVFKDTRELAKVAANMV 304 Query: 303 DAVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQLK 357 DAVL GK P+INDTKTYNNGVKVVPSYLLKPV VD SNWK++LVGSGYYTEAQLK Sbjct: 305 DAVLSGKSPEINDTKTYNNGVKVVPSYLLKPVAVDASNWKQVLVGSGYYTEAQLK 359 >ref|YP_002942962.1| sugar ABC transporter periplasmic sugar-binding protein [Variovorax paradoxus S110] gb|ACS17696.1| sugar ABC transporter, periplasmic sugar-binding protein [Variovorax paradoxus S110] Length = 356 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 279/355 (78%), Positives = 313/355 (88%), Gaps = 4/355 (1%) Query: 3 IKSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKGYQ 62 +K+ L+GIAL + I+ AQ K + ++MPTKSSARWIADG NMVK KEKGY+ Sbjct: 6 LKASLAGIALAIA----GIAPLAHAQDKGPIAISMPTKSSARWIADGANMVKYFKEKGYK 61 Query: 63 TDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIR 122 TDLQYA+DDIPNQL+QIENM+TKG+KVLVIAAIDGTTL+DVLQKAADKGVKVIAYDRLI+ Sbjct: 62 TDLQYADDDIPNQLAQIENMVTKGSKVLVIAAIDGTTLSDVLQKAADKGVKVIAYDRLIK 121 Query: 123 GSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMS 182 GSKNVDYYATFDNFQVGVLQAQS+E ALGLK GKGPFNIELFGGS DDNNAFFFYNGAMS Sbjct: 122 GSKNVDYYATFDNFQVGVLQAQSIESALGLKSGKGPFNIELFGGSPDDNNAFFFYNGAMS 181 Query: 183 VLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAFYTNAKVNAVLSPYDGL 242 VL+PYI SGKLVVRSKQMGMDKV TLRWD A AQARMDNLLSA+Y+ +V+AVLSPYDGL Sbjct: 182 VLEPYIKSGKLVVRSKQMGMDKVGTLRWDGAVAQARMDNLLSAYYSKDRVDAVLSPYDGL 241 Query: 243 SIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMV 302 SIGILSSL+GVGYG+ QP P VSGQDAE+PSVKSI+R EQ ST+FKDTRELAKVTV MV Sbjct: 242 SIGILSSLKGVGYGSASQPMPVVSGQDAEIPSVKSILRKEQTSTVFKDTRELAKVTVAMV 301 Query: 303 DAVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQLK 357 DA+L GK P++NDTKTYNNG+KVVPSYLLKPV VD NWK++LV SGYY E+Q+K Sbjct: 302 DAMLSGKTPEVNDTKTYNNGIKVVPSYLLKPVSVDGGNWKQVLVDSGYYKESQVK 356 >ref|YP_004153443.1| sugar ABC transporter periplasmic sugar-binding protein [Variovorax paradoxus EPS] gb|ADU35332.1| sugar ABC transporter, periplasmic sugar-binding protein [Variovorax paradoxus EPS] Length = 356 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 277/354 (78%), Positives = 310/354 (87%) Query: 4 KSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKGYQT 63 ++ L GL ++ + +AQ K L+ ++MPTKSSARWIADG NMVK KEKGY+T Sbjct: 3 RNFLKASLAGLAFAVVGFTPLANAQDKGLIAISMPTKSSARWIADGANMVKYFKEKGYKT 62 Query: 64 DLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIRG 123 DLQYA+DDIPNQL+QIENM+TKG+KVLVIAAIDGTTL+DVLQKAADKGVKVIAYDRLI+G Sbjct: 63 DLQYADDDIPNQLAQIENMVTKGSKVLVIAAIDGTTLSDVLQKAADKGVKVIAYDRLIKG 122 Query: 124 SKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMSV 183 SKNVDYYATFDNFQVGVLQAQS+E ALGLK GKGPFNIELFGGS DDNNAFFFYNGAMSV Sbjct: 123 SKNVDYYATFDNFQVGVLQAQSIEAALGLKSGKGPFNIELFGGSPDDNNAFFFYNGAMSV 182 Query: 184 LKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAFYTNAKVNAVLSPYDGLS 243 L+PYI SGKLVVRSKQMGMDKV TLRWD A AQARMDNLLSA+YT +V+AVLSPYDGLS Sbjct: 183 LEPYIKSGKLVVRSKQMGMDKVGTLRWDGAVAQARMDNLLSAYYTKDRVDAVLSPYDGLS 242 Query: 244 IGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVD 303 IGILSSL+GVGYG+ Q P VSGQDAEVPSVKSI+R EQ ST+FKDTRELAKVTV M D Sbjct: 243 IGILSSLKGVGYGSGTQAMPIVSGQDAEVPSVKSILRKEQTSTVFKDTRELAKVTVAMAD 302 Query: 304 AVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEILVGSGYYTEAQLK 357 A+L GK P++NDTKTYNNG+KVVPSYLLKPV VD SNWK++LV SGYY E+Q+K Sbjct: 303 AMLSGKTPEVNDTKTYNNGIKVVPSYLLKPVSVDASNWKQVLVDSGYYKESQVK 356