BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0836.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774460.1| sugar ABC transporter permease [Herbaspirill... 539 e-151 ref|YP_004752981.1| inner-membrane translocator [Collimonas fung... 442 e-122 ref|ZP_07673691.1| ribose transport system permease protein RbsC... 362 4e-98 ref|YP_001892627.1| Monosaccharide-transporting ATPase [Ralstoni... 357 2e-96 emb|CBA30240.1| Inner membrane ABC transporter permease protein ... 350 1e-94 >ref|YP_003774460.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62552.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 359 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 343/359 (95%), Positives = 352/359 (98%) Query: 1 MSASMDSKLIPDSAASGSAPAFAALLRHPLVRPLAALALLLLIDFLLVPGFFKLEIKDGH 60 MSASMDSKLIPD+AAS +P A LLRHPLVRPL ALA+LLLIDFLLVPGFFKLEIKDGH Sbjct: 1 MSASMDSKLIPDTAASAGSPMLAGLLRHPLVRPLGALAVLLLIDFLLVPGFFKLEIKDGH 60 Query: 61 LYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAVLIGGKMVVVNGV 120 LYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAA+LIGGKMVVV+GV Sbjct: 61 LYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAILIGGKMVVVDGV 120 Query: 121 SEYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQ 180 S+YVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQ Sbjct: 121 SQYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQ 180 Query: 181 IVTVYYKPFFFLGGGYLFGLPFSLYIAGAMFLLLALLMKKTALGLFIQSVGINPVASRLA 240 IVTVYYKPFFFLGGGYLFGLPFSLYIA AMF+LLALLMKKTALGLFI+SVGINPVASRLA Sbjct: 181 IVTVYYKPFFFLGGGYLFGLPFSLYIAAAMFVLLALLMKKTALGLFIESVGINPVASRLA 240 Query: 241 GIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGG 300 GIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGG Sbjct: 241 GIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGG 300 Query: 301 KFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSPEFRRMLRMSKS 359 KFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSP+FRRMLRMSKS Sbjct: 301 KFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSPQFRRMLRMSKS 359 >ref|YP_004752981.1| inner-membrane translocator [Collimonas fungivorans Ter331] gb|AEK62158.1| inner-membrane translocator [Collimonas fungivorans Ter331] Length = 382 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 281/340 (82%), Positives = 313/340 (92%), Gaps = 4/340 (1%) Query: 16 SGSAPAFAA----LLRHPLVRPLAALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINR 71 S ++P+ A +LR+PL+RPLAALALLLLIDF ++PGFF+LE KDGHLYG+LIDI+NR Sbjct: 19 SDTSPSLAVRLRVMLRNPLLRPLAALALLLLIDFFMIPGFFRLEWKDGHLYGSLIDIVNR 78 Query: 72 AAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAVLIGGKMVVVNGVSEYVSNVPMVW 131 AAPL+L ALGMTLVIATRG+DISVGAVVAISG VAA+LIGG M + NG+ EY S +PMVW Sbjct: 79 AAPLILTALGMTLVIATRGIDISVGAVVAISGTVAAMLIGGTMEMHNGIPEYASRIPMVW 138 Query: 132 ALCAAMGAALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQIVTVYYKPFFF 191 A+ AAMGAALLCG WNG LVA LGLQPIIATLILMV GRGLAQLLTDGQIVTVYYKPFF+ Sbjct: 139 AIAAAMGAALLCGVWNGFLVATLGLQPIIATLILMVGGRGLAQLLTDGQIVTVYYKPFFY 198 Query: 192 LGGGYLFGLPFSLYIAGAMFLLLALLMKKTALGLFIQSVGINPVASRLAGIRTAALIFFV 251 +G GYLFGLPFSL+IA +F+++AL+M+KTALGLFIQ+VGINPVA+RLAGIRTAALIFFV Sbjct: 199 IGSGYLFGLPFSLFIAIGVFVIVALMMRKTALGLFIQAVGINPVAARLAGIRTAALIFFV 258 Query: 252 YMFCSACAGLAGLMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGA 311 YMFCSACAG+AGLMI+SNIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGA Sbjct: 259 YMFCSACAGVAGLMISSNIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGA 318 Query: 312 LIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSPEFR 351 LIIQ LTYTIYS+GVPPEVNMVVKSIVVF VCLSQSPEFR Sbjct: 319 LIIQALTYTIYSMGVPPEVNMVVKSIVVFAVCLSQSPEFR 358 >ref|ZP_07673691.1| ribose transport system permease protein RbsC [Ralstonia sp. 5_7_47FAA] gb|EFP67895.1| ribose transport system permease protein RbsC [Ralstonia sp. 5_7_47FAA] Length = 349 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 237/331 (71%), Positives = 279/331 (84%) Query: 24 ALLRHPLVRPLAALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMT 83 AL H L P L LL L++ P FF L++++GHLYG+LIDI+NRAAPLML +LGMT Sbjct: 8 ALTGHRLFWPCVTLLLLCLLNAWFNPHFFHLDVRNGHLYGSLIDILNRAAPLMLVSLGMT 67 Query: 84 LVIATRGVDISVGAVVAISGAVAAVLIGGKMVVVNGVSEYVSNVPMVWALCAAMGAALLC 143 LVIA G+DIS GAVVAISGA+AA L+GG +VV NG+ YV+ VP++ AL AA+GAAL+C Sbjct: 68 LVIAVGGIDISAGAVVAISGAIAASLVGGTLVVQNGLPVYVTKVPLLLALLAAVGAALVC 127 Query: 144 GAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFS 203 G WNGLLVAG G+QPIIATLILMVAGRG+AQL+T GQI+TVYY+PFFF+G GYLFGLPF Sbjct: 128 GMWNGLLVAGAGMQPIIATLILMVAGRGVAQLITGGQIITVYYEPFFFVGNGYLFGLPFG 187 Query: 204 LYIAGAMFLLLALLMKKTALGLFIQSVGINPVASRLAGIRTAALIFFVYMFCSACAGLAG 263 LYIA A+ LL LLM +TALGLFI++VGINPVA+RLAG+ T AL+F +Y FC A AG+AG Sbjct: 188 LYIAAAVLGLLLLLMHRTALGLFIEAVGINPVAARLAGLNTKALLFGIYAFCGAMAGVAG 247 Query: 264 LMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYS 323 L+I SN+KSAD NNAGLLLELDAILAVTLGGTSLAGGKFSL GSVIGALIIQTLTY IYS Sbjct: 248 LIICSNVKSADGNNAGLLLELDAILAVTLGGTSLAGGKFSLWGSVIGALIIQTLTYAIYS 307 Query: 324 LGVPPEVNMVVKSIVVFLVCLSQSPEFRRML 354 +GVPPE+N+VVK++VVF VCL+QS FR ML Sbjct: 308 MGVPPEINLVVKAVVVFAVCLAQSEAFRSML 338 >ref|YP_001892627.1| Monosaccharide-transporting ATPase [Ralstonia pickettii 12J] ref|YP_002984129.1| sugar ABC transporter ATPase [Ralstonia pickettii 12D] gb|ACD29200.1| Monosaccharide-transporting ATPase [Ralstonia pickettii 12J] gb|ACS65457.1| Monosaccharide-transporting ATPase [Ralstonia pickettii 12D] Length = 349 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 237/331 (71%), Positives = 279/331 (84%) Query: 24 ALLRHPLVRPLAALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMT 83 AL H L P L LL L++ P FF L+I++GHLYG+LIDI+NRAAPLML +LGMT Sbjct: 8 ALTGHRLFWPGVTLLLLCLLNAWFNPHFFHLDIRNGHLYGSLIDILNRAAPLMLVSLGMT 67 Query: 84 LVIATRGVDISVGAVVAISGAVAAVLIGGKMVVVNGVSEYVSNVPMVWALCAAMGAALLC 143 LVIA G+DISVGAVVAISGA+AA L+GG +VV NG+ YV+ P++ AL AA+GAAL+C Sbjct: 68 LVIAVGGIDISVGAVVAISGAIAASLVGGTLVVQNGLPVYVTKAPLLLALLAAVGAALVC 127 Query: 144 GAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFS 203 G WNGLLVAG G+QPIIATLILMVAGRG+AQL+T GQI+TVYY+PFFF+G GYLFGLPF Sbjct: 128 GLWNGLLVAGAGMQPIIATLILMVAGRGVAQLITGGQIITVYYEPFFFVGNGYLFGLPFG 187 Query: 204 LYIAGAMFLLLALLMKKTALGLFIQSVGINPVASRLAGIRTAALIFFVYMFCSACAGLAG 263 LYIA A+ LL LLM +TALGLF+++VGINPVA+RLAG+ T AL+F +Y FC A AG+AG Sbjct: 188 LYIAAAVLGLLLLLMHRTALGLFVEAVGINPVAARLAGLNTKALLFGIYAFCGAMAGVAG 247 Query: 264 LMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYS 323 L+I SN+KSAD NNAGLLLELDAILAVTLGGTSLAGGKFSL GSVIGALIIQTLTY IYS Sbjct: 248 LIICSNVKSADGNNAGLLLELDAILAVTLGGTSLAGGKFSLWGSVIGALIIQTLTYAIYS 307 Query: 324 LGVPPEVNMVVKSIVVFLVCLSQSPEFRRML 354 +GVPPE+N+VVK++VVF VCL+QS FR ML Sbjct: 308 MGVPPEINLVVKAVVVFAVCLAQSEAFRSML 338 >emb|CBA30240.1| Inner membrane ABC transporter permease protein ytfT [Curvibacter putative symbiont of Hydra magnipapillata] Length = 355 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 220/340 (64%), Positives = 282/340 (82%), Gaps = 1/340 (0%) Query: 17 GSAPAFAALLR-HPLVRPLAALALLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPL 75 + P+F ++ HPL+ P+ L L+L+++ L PGF+ L+ +DGHLYG++IDI+NRAAPL Sbjct: 4 ANTPSFVKRVQAHPLLWPVVTLVLILMVNASLNPGFWMLQWRDGHLYGSVIDILNRAAPL 63 Query: 76 MLAALGMTLVIATRGVDISVGAVVAISGAVAAVLIGGKMVVVNGVSEYVSNVPMVWALCA 135 ML +LGMTLVIATRG+DISVGA VAIS AVAA+++GGK+V+ +GV+++VS PM A+ Sbjct: 64 MLVSLGMTLVIATRGIDISVGATVAISAAVAALMVGGKLVITDGVAQHVSRFPMWLAIVC 123 Query: 136 AMGAALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQIVTVYYKPFFFLGGG 195 A+ AL CG WNG+LVA +GLQPIIATLILMVAGRG+AQLLTDGQIVTVYY P+F++G G Sbjct: 124 ALITALACGLWNGVLVAKIGLQPIIATLILMVAGRGVAQLLTDGQIVTVYYPPYFYIGSG 183 Query: 196 YLFGLPFSLYIAGAMFLLLALLMKKTALGLFIQSVGINPVASRLAGIRTAALIFFVYMFC 255 YL+GLPF+L+IAG ++LL+ L + +TALGLFIQ++GINP A+R+AG+R + VY FC Sbjct: 184 YLWGLPFALFIAGFVYLLMHLAVTRTALGLFIQAIGINPAAARVAGVRERLISICVYAFC 243 Query: 256 SACAGLAGLMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQ 315 AG+AGL+I+SN+KSAD NNAG LLELDAILAVTLGGT L GG+F+L GS+IGALIIQ Sbjct: 244 GLTAGIAGLIISSNVKSADGNNAGNLLELDAILAVTLGGTLLTGGRFTLAGSMIGALIIQ 303 Query: 316 TLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSPEFRRMLR 355 TLT TIYS+GVPPE+N+VVK+ VVF+V L QS EFRR +R Sbjct: 304 TLTSTIYSIGVPPEINLVVKAAVVFVVMLMQSAEFRRAVR 343