BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0835.p (516 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum... 924 0.0 ref|YP_004752982.1| putative ABC transporter [Collimonas fungivo... 738 0.0 ref|YP_001892626.1| ABC transporter [Ralstonia pickettii 12J] >g... 585 e-165 ref|ZP_07673692.1| ribose import ATP-binding protein RbsA 1 [Ral... 580 e-163 ref|YP_001861639.1| ABC transporter related [Burkholderia phymat... 567 e-159 >ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ62551.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 490/516 (94%), Positives = 501/516 (97%) Query: 1 MTMSVGTQARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTG 60 MTMSVGTQARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTG Sbjct: 1 MTMSVGTQARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTG 60 Query: 61 VHEPDAGKIELDGRAIAPASTLEAQSLGISTVYQEVNLCPNLSVAENIFVGRYPRRFGRI 120 VHEPD GKIELDGRAIAPASTLEAQ+LGISTVYQEVNLCPNLSVAENIFVGRYP RFGRI Sbjct: 61 VHEPDGGKIELDGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPTRFGRI 120 Query: 121 DWKSVHAQSKQLLQQLQIDIDVGALLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLD 180 DWKSVH QS+QLLQQLQIDIDV A LSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLD Sbjct: 121 DWKSVHTQSRQLLQQLQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLD 180 Query: 181 EAEVQQLFKVLRRLREQGMAILFVTHFLDQTYDISDRITVLRNGVREGEYLVGDLSRLDL 240 EAEVQQLFKVLRRLREQGMAILFVTHFLDQTY+ISDRITVLRNGVREGEYLV +LSRLDL Sbjct: 181 EAEVQQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSRLDL 240 Query: 241 VNKMVGVTAVDHRKVEAGAEALAAGLSADEAGKGEVFLQADGFGRRGVLSPQDLELRRGE 300 VNKMVGVTAVDHRKVEAGAEALA+ LS D A G VFLQA+GFGRRGVL+PQDL+LRRGE Sbjct: 241 VNKMVGVTAVDHRKVEAGAEALASELSTDAAAAGAVFLQAEGFGRRGVLAPQDLQLRRGE 300 Query: 301 VFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLDNPRDAIAAGIGFCSEDRKKE 360 VFGLCGLLGSGRTEMARLLFGADRADCGQLRIEG+ V+L+ PRDAIAAGIGFCSEDRKKE Sbjct: 301 VFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGKEVRLNVPRDAIAAGIGFCSEDRKKE 360 Query: 361 GAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSGGN 420 GAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSGGN Sbjct: 361 GAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSGGN 420 Query: 421 QQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLR 480 QQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLR Sbjct: 421 QQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLR 480 Query: 481 CSDRMLVLRDRRACGEYRRGELDEQSVLQVIAGEAA 516 CSDRMLVLRDRRACGEYRRGELDEQSVLQVIAGE A Sbjct: 481 CSDRMLVLRDRRACGEYRRGELDEQSVLQVIAGETA 516 >ref|YP_004752982.1| putative ABC transporter [Collimonas fungivorans Ter331] gb|AEK62159.1| putative ABC transporter [Collimonas fungivorans Ter331] Length = 518 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 384/506 (75%), Positives = 434/506 (85%), Gaps = 9/506 (1%) Query: 11 PMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDAGKIE 70 P LEL+GI+KAF GVKAL+DV LRL+PGEVHTLMGQNGAGKSTLIKVLTGV+ PD+G+I Sbjct: 18 PTLELNGIYKAFGGVKALSDVALRLYPGEVHTLMGQNGAGKSTLIKVLTGVYAPDSGEIR 77 Query: 71 LDGRAIAPASTLEAQSLGISTVYQEVNLCPNLSVAENIFVGRYPRRFGRIDWKSVHAQSK 130 LDG+ + P+ST +AQ+LGISTVYQEVNLCPNLSVAENIF+GRYPR+FGRIDWK++ Q++ Sbjct: 78 LDGKVVQPSSTHDAQNLGISTVYQEVNLCPNLSVAENIFIGRYPRKFGRIDWKTMQQQAQ 137 Query: 131 QLLQQLQIDIDVGALLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKV 190 +LL LQ+ IDV A L+ YPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEV+ LF V Sbjct: 138 RLLGDLQVHIDVTAALARYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVRLLFDV 197 Query: 191 LRRLREQGMAILFVTHFLDQTYDISDRITVLRNGVREGEYLVGDLSRLDLVNKMVGVTAV 250 LR+LR QGMAILFVTHFL+QTY+ISDRITVLRNGV EGEY LSR +LVNKMVG+ + Sbjct: 198 LRKLRGQGMAILFVTHFLEQTYEISDRITVLRNGVLEGEYPASALSRFELVNKMVGLQS- 256 Query: 251 DHRKVEAGAEALAAGLSADEAGKGEVFLQADGFGRRGVLSPQDLELRRGEVFGLCGLLGS 310 AG EA +A G GE+ L+A G GR+G+L+P DL+ R GEVFGLCGLLGS Sbjct: 257 ------AGREAASADKDVRAPGSGEIVLKARGLGRKGILAPLDLDFRAGEVFGLCGLLGS 310 Query: 311 GRTEMARLLFGADRADCGQLRIEGRS--VKLDNPRDAIAAGIGFCSEDRKKEGAILELSV 368 GRTE ARLLFGAD+AD G ++++G S + +PRDAIAAGIGFCSEDRK EGAILELSV Sbjct: 311 GRTEAARLLFGADKADSGSIQMKGGSGPERFSSPRDAIAAGIGFCSEDRKAEGAILELSV 370 Query: 369 RENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSGGNQQKALLAR 428 RENIILALQAR GL RV+PRKRQ IA+DYVKWLGIKT D+ETPI LSGGNQQKALLAR Sbjct: 371 RENIILALQARAGLLRVIPRKRQQAIASDYVKWLGIKTPDIETPISSLSGGNQQKALLAR 430 Query: 429 WLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLRCSDRMLVL 488 WLATDP MLILDEPTRGIDVRAKQEIMD VIA+C KGM+ILFISSEIPEVLRCSDRMLVL Sbjct: 431 WLATDPAMLILDEPTRGIDVRAKQEIMDHVIALCSKGMAILFISSEIPEVLRCSDRMLVL 490 Query: 489 RDRRACGEYRRGELDEQSVLQVIAGE 514 RDR CGEY RG+LD++SVLQVIAGE Sbjct: 491 RDREPCGEYLRGQLDDESVLQVIAGE 516 >ref|YP_001892626.1| ABC transporter [Ralstonia pickettii 12J] ref|YP_002984128.1| ABC transporter [Ralstonia pickettii 12D] gb|ACD29199.1| ABC transporter related [Ralstonia pickettii 12J] gb|ACS65456.1| ABC transporter related [Ralstonia pickettii 12D] Length = 525 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 321/509 (63%), Positives = 380/509 (74%), Gaps = 9/509 (1%) Query: 6 GTQAR-PMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEP 64 T AR +L + GI K F GV+AL V RLFPGEVH LMGQNGAGKSTLIKVLTGV P Sbjct: 10 ATDARGALLHMRGICKNFPGVQALAAVDFRLFPGEVHALMGQNGAGKSTLIKVLTGVEAP 69 Query: 65 DAGKIELDGRAIAPASTLEAQSLGISTVYQEVNLCPNLSVAENIFVGRYPRRFGRIDWKS 124 DAG+I L G+ IAP+S LEAQ LGISTVYQEVNLCPNL+VAENI +GR+P R G IDW++ Sbjct: 70 DAGEIVLGGQPIAPSSPLEAQKLGISTVYQEVNLCPNLTVAENIHIGRFPMRMGSIDWRA 129 Query: 125 VHAQSKQLLQQLQIDIDVGALLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEV 184 + ++ LL L I IDV LS YP+AIQQMVAI+RALS A++LILDEPTSSLD+ EV Sbjct: 130 TNRAAQALLADLNIHIDVTLPLSLYPVAIQQMVAIARALSTEARILILDEPTSSLDDDEV 189 Query: 185 QQLFKVLRRLREQGMAILFVTHFLDQTYDISDRITVLRNGVREGEYLVGDLSRLDLVNKM 244 +LF +R L+ +GMA+LFVTHFL+QTY I+DRITVLRNG EGEY DL +L L+NKM Sbjct: 190 ARLFAAIRTLKARGMAVLFVTHFLEQTYAIADRITVLRNGRLEGEYAARDLPQLQLINKM 249 Query: 245 VGVTAVDHRKVEAGAEALAAGLSADEAGKGEVFLQADGFGRRGVLSPQDLELRRGEVFGL 304 VG R ++A S D+ FL A G GRRGV+ P DL++R G+V GL Sbjct: 250 VG------RDIDASRFERTEVPSVDDTAPA--FLSARGMGRRGVVQPLDLDVRPGQVLGL 301 Query: 305 CGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLDNPRDAIAAGIGFCSEDRKKEGAIL 364 GLLGSGRTE ARLLFG DR D G + + G++ + +PRDAI GIGFC EDRK EG I Sbjct: 302 GGLLGSGRTETARLLFGVDRNDAGSINVHGQARQFSSPRDAIRQGIGFCPEDRKTEGIIA 361 Query: 365 ELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSGGNQQKA 424 ELS+RENIILALQA++GLFR LP+KRQ +IA Y+ LGIKT D E PIG LSGGNQQKA Sbjct: 362 ELSIRENIILALQAKRGLFRYLPKKRQREIADQYIAQLGIKTPDAEKPIGQLSGGNQQKA 421 Query: 425 LLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLRCSDR 484 +LARWLATDP MLILDEPTRGID+ AK +IMD V A CRKGM+ILFISSE+PEVLR S R Sbjct: 422 VLARWLATDPAMLILDEPTRGIDIAAKLDIMDLVTAQCRKGMAILFISSELPEVLRVSHR 481 Query: 485 MLVLRDRRACGEYRRGELDEQSVLQVIAG 513 + +LRDR+ GE ++ E ++ VIAG Sbjct: 482 LAILRDRKKVGELAGADVTEDNLCHVIAG 510 >ref|ZP_07673692.1| ribose import ATP-binding protein RbsA 1 [Ralstonia sp. 5_7_47FAA] gb|EFP67896.1| ribose import ATP-binding protein RbsA 1 [Ralstonia sp. 5_7_47FAA] Length = 525 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 319/509 (62%), Positives = 377/509 (74%), Gaps = 9/509 (1%) Query: 6 GTQAR-PMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEP 64 T AR +L + GI K F GV+AL V RL PGEVH LMGQNGAGKSTLIKVLTGV P Sbjct: 10 ATDARGALLHMRGICKNFPGVQALAGVDFRLLPGEVHALMGQNGAGKSTLIKVLTGVEAP 69 Query: 65 DAGKIELDGRAIAPASTLEAQSLGISTVYQEVNLCPNLSVAENIFVGRYPRRFGRIDWKS 124 DAG+I L G+ IAP S LEAQ LGISTVYQEVNLCPNL+VAENI +GR+P R G IDW++ Sbjct: 70 DAGEILLGGQPIAPGSPLEAQKLGISTVYQEVNLCPNLTVAENIHIGRFPMRLGSIDWRA 129 Query: 125 VHAQSKQLLQQLQIDIDVGALLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEV 184 + ++ LL L I IDV LS YP+AIQQMVAI+RALS A++LILDEPTSSLD+ EV Sbjct: 130 TNRAAQALLADLNIHIDVTLPLSLYPVAIQQMVAIARALSTEARILILDEPTSSLDDDEV 189 Query: 185 QQLFKVLRRLREQGMAILFVTHFLDQTYDISDRITVLRNGVREGEYLVGDLSRLDLVNKM 244 +LF +R L+ +GMA+LFVTHFL+QTY I+DRITVLRNG EGEY DL +L L+NKM Sbjct: 190 ARLFAAIRTLKARGMAVLFVTHFLEQTYAIADRITVLRNGRLEGEYAARDLPQLQLINKM 249 Query: 245 VGVTAVDHRKVEAGAEALAAGLSADEAGKGEVFLQADGFGRRGVLSPQDLELRRGEVFGL 304 VG R ++A D+ FL A G GRRGV+ P DL++R G+V GL Sbjct: 250 VG------RDIDASRFERTEVPPVDDTAPA--FLSARGMGRRGVVQPLDLDVRPGQVLGL 301 Query: 305 CGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLDNPRDAIAAGIGFCSEDRKKEGAIL 364 GLLGSGRTE ARLLFG DR D G + + G++ + +PRDAI GIGFC EDRK EG I Sbjct: 302 GGLLGSGRTETARLLFGVDRNDAGSINVHGQARQFSSPRDAIRQGIGFCPEDRKTEGIIA 361 Query: 365 ELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSGGNQQKA 424 ELS+RENIILALQA++GLFR LP+KRQ +IA Y+ LGIKT D E PIG LSGGNQQKA Sbjct: 362 ELSIRENIILALQAKRGLFRYLPKKRQREIADQYIAQLGIKTPDAEKPIGQLSGGNQQKA 421 Query: 425 LLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLRCSDR 484 +LARWLATDP MLILDEPTRGID+ AK +IMD V A CRKGM+ILFISSE+PEVLR S R Sbjct: 422 VLARWLATDPAMLILDEPTRGIDIAAKLDIMDLVTAQCRKGMAILFISSELPEVLRVSHR 481 Query: 485 MLVLRDRRACGEYRRGELDEQSVLQVIAG 513 + +LRDR+ GE ++ E ++ VIAG Sbjct: 482 LAILRDRKKVGELAGADVTEDNLCHVIAG 510 >ref|YP_001861639.1| ABC transporter related [Burkholderia phymatum STM815] gb|ACC74593.1| ABC transporter related [Burkholderia phymatum STM815] Length = 516 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 308/505 (60%), Positives = 379/505 (75%), Gaps = 6/505 (1%) Query: 9 ARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDAGK 68 A+P+LE GI K F GVKAL+ V RLFPGE+H+LMGQNGAGKSTLI VLTGVHE DAG+ Sbjct: 15 AQPLLETLGISKTFPGVKALSGVDFRLFPGEIHSLMGQNGAGKSTLINVLTGVHEQDAGE 74 Query: 69 IELDGRAIAPASTLEAQSLGISTVYQEVNLCPNLSVAENIFVGRYPRRFGRIDWKSVHAQ 128 I L G + A+ LEA++ GI T+YQE+NLCPNLSVAENIF GR P+R G IDWK++HA+ Sbjct: 75 IRLAGEPVRFATPLEAEAAGIQTLYQEINLCPNLSVAENIFAGRQPKRRGAIDWKAIHAR 134 Query: 129 SKQLLQQLQIDIDVGALLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLF 188 S+ L +L + +DV L +YP+A+QQMVAI+RA+SV A+VLILDEPTSSLD+ EV +LF Sbjct: 135 SEAALAELNVSLDVTKSLDAYPIAVQQMVAIARAMSVKARVLILDEPTSSLDDGEVARLF 194 Query: 189 KVLRRLREQGMAILFVTHFLDQTYDISDRITVLRNGVREGEYLVGDLSRLDLVNKMVGVT 248 VLR LR+ G+AILFVTHFL+QTY ISDRITV+RNGVREGEYL DL LV KMVG Sbjct: 195 DVLRNLRQTGIAILFVTHFLEQTYAISDRITVMRNGVREGEYLAHDLPVEALVAKMVG-- 252 Query: 249 AVDHRKVEAGAEALAAGLSADEAGKGEVFLQADGFGRRGVLSPQDLELRRGEVFGLCGLL 308 H ++ + A AG FL G RRGV++P DL+++ G++ GL GLL Sbjct: 253 ---HNRMSERLKGGAPDTPQQRAGAAP-FLSMQGVARRGVMNPIDLDVQPGQILGLAGLL 308 Query: 309 GSGRTEMARLLFGADRADCGQLRIEGRSVKLDNPRDAIAAGIGFCSEDRKKEGAILELSV 368 GSGRTE ARLLFG DRAD G + ++G++ KL +P DA+ GIG+C EDRKKEG + LS+ Sbjct: 309 GSGRTETARLLFGVDRADAGTISVDGKNTKLSSPHDAVRHGIGYCPEDRKKEGIVAALSI 368 Query: 369 RENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSGGNQQKALLAR 428 RENIILALQAR+G R + RK+Q +IA Y++ LGIK D E PIGLLSGGNQQK +LAR Sbjct: 369 RENIILALQARRGWLRAISRKKQREIADTYIERLGIKAQDAEQPIGLLSGGNQQKVVLAR 428 Query: 429 WLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLRCSDRMLVL 488 WLAT+P MLILDEPTRGIDV AK EIMD V+A+C KG++ILFISSE+ EV+R S R+ VL Sbjct: 429 WLATEPKMLILDEPTRGIDVAAKFEIMDRVLALCTKGLAILFISSEVSEVVRVSHRIAVL 488 Query: 489 RDRRACGEYRRGELDEQSVLQVIAG 513 RDRR + + E V ++IAG Sbjct: 489 RDRRKVADVTGSAVSEDQVYRLIAG 513