BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0834.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774458.1| sugar ABC transporter periplasmic protein [H... 575 e-162 ref|YP_004752983.1| periplasmic binding protein/LacI transcripti... 507 e-141 ref|YP_001892625.1| LacI family transcriptional regulator [Ralst... 475 e-132 ref|ZP_07673693.1| periplasmic ribose-binding protein [Ralstonia... 473 e-131 ref|YP_970607.1| periplasmic-binding protein/LacI transcriptiona... 467 e-130 >ref|YP_003774458.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62550.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 316/324 (97%), Positives = 320/324 (98%), Gaps = 1/324 (0%) Query: 1 MNSKRRALLGAAICMSLGS-AVSFPAFAADKPLTMGFSQVGAESEWRTANTVSIKDAAKQ 59 MNSKRRALLGAAIC+SLGS A+S PAFAADKPLTMGFSQVGAESEWRTANTVSIKDAAKQ Sbjct: 1 MNSKRRALLGAAICLSLGSSAMSLPAFAADKPLTMGFSQVGAESEWRTANTVSIKDAAKQ 60 Query: 60 AGVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVILTD 119 AGVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVILTD Sbjct: 61 AGVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVILTD 120 Query: 120 RAVNVSDKSLYVTFIGSDFVEEGRRAGRWLLDKAKSMPAGDINIVELQGTVGSAPAIDRK 179 RAVNVSDKSLYVTFIGSDFVEEGRRAGRWLL+KAKSMPAGDINIVELQGTVGSAPAIDRK Sbjct: 121 RAVNVSDKSLYVTFIGSDFVEEGRRAGRWLLEKAKSMPAGDINIVELQGTVGSAPAIDRK 180 Query: 180 AGFEEVIKSEPRLKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQA 239 AGFEEVIK EPRLKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQA Sbjct: 181 AGFEEVIKGEPRLKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQA 240 Query: 240 IEEAGLKPGKDITIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMQIAKDIKAGKEVP 299 IEEAG+KPGKDI IISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMQIAKDIKAGKEVP Sbjct: 241 IEEAGMKPGKDIIIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMQIAKDIKAGKEVP 300 Query: 300 KRITTEEGIFPAEVAAKEFPNRKY 323 KRITTEEGIFPAEVAAKEFPNRKY Sbjct: 301 KRITTEEGIFPAEVAAKEFPNRKY 324 >ref|YP_004752983.1| periplasmic binding protein/LacI transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62160.1| periplasmic binding protein/LacI transcriptional regulator [Collimonas fungivorans Ter331] Length = 326 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 272/323 (84%), Positives = 297/323 (91%), Gaps = 1/323 (0%) Query: 1 MNSKRRALLGAAICMSLGSAVSFPAFAADKPLTMGFSQVGAESEWRTANTVSIKDAAKQA 60 M RR +L AA+C+ LG ++ A+A +KP+ +GFSQVGAESEWRTANT SIKDAAKQA Sbjct: 5 MKMTRRTVLSAALCLGLGFGIAGSAYA-EKPVVLGFSQVGAESEWRTANTASIKDAAKQA 63 Query: 61 GVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVILTDR 120 GV LKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGW+TVL EAKAAKIPVILTDR Sbjct: 64 GVTLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWDTVLGEAKAAKIPVILTDR 123 Query: 121 AVNVSDKSLYVTFIGSDFVEEGRRAGRWLLDKAKSMPAGDINIVELQGTVGSAPAIDRKA 180 AV+ DKSLYVTFIGSDFVEEGRRAGRWLL++AK+MPAGDINIVELQGTVGSAPAIDRKA Sbjct: 124 AVDAKDKSLYVTFIGSDFVEEGRRAGRWLLERAKTMPAGDINIVELQGTVGSAPAIDRKA 183 Query: 181 GFEEVIKSEPRLKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAI 240 GF E+I + P+LK+IRSQTGDFTRAKGKEVMEAFLK +GKKINVLYAHNDDMAIGAIQAI Sbjct: 184 GFAEIIAANPKLKVIRSQTGDFTRAKGKEVMEAFLKTDGKKINVLYAHNDDMAIGAIQAI 243 Query: 241 EEAGLKPGKDITIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMQIAKDIKAGKEVPK 300 EEAGLKPGKDI +ISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLM++AK + AG+ VPK Sbjct: 244 EEAGLKPGKDILVISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMKVAKQVLAGETVPK 303 Query: 301 RITTEEGIFPAEVAAKEFPNRKY 323 RITTEE +FPAEVAAKEFPNRKY Sbjct: 304 RITTEESVFPAEVAAKEFPNRKY 326 >ref|YP_001892625.1| LacI family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002984127.1| periplasmic binding protein/LacI transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29198.1| periplasmic binding protein/LacI transcriptional regulator [Ralstonia pickettii 12J] gb|ACS65455.1| periplasmic binding protein/LacI transcriptional regulator [Ralstonia pickettii 12D] Length = 328 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 254/307 (82%), Positives = 275/307 (89%), Gaps = 2/307 (0%) Query: 17 LGSAVSFPAFAADKPLTMGFSQVGAESEWRTANTVSIKDAAKQAGVNLKFADAQQKQENQ 76 L + ++ A AADK TMGF+QVGAESEWRTAN+ SIK AK GVNLKF+DAQQKQENQ Sbjct: 24 LATGLATAAHAADKSFTMGFAQVGAESEWRTANSESIKSTAKAQGVNLKFSDAQQKQENQ 83 Query: 77 VKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVILTDRAVNVSDKSLYVTFIGS 136 +KAIRS+IAQKVDVIAFSPVVESGW+TVL+EAKAAKIPVILTDR ++ D SLY TFIGS Sbjct: 84 IKAIRSYIAQKVDVIAFSPVVESGWDTVLQEAKAAKIPVILTDRGIDSKDTSLYTTFIGS 143 Query: 137 DFVEEGRRAGRWLLDKAKSMPAGDINIVELQGTVGSAPAIDRKAGFEEVIKSEPRLKIIR 196 DFVEEGR+AGRWLL+ K P GD+NIVELQGTVGSAPAIDRK GFEE+IK++P KIIR Sbjct: 144 DFVEEGRKAGRWLLENVK--PKGDVNIVELQGTVGSAPAIDRKRGFEEIIKADPHYKIIR 201 Query: 197 SQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISI 256 SQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISI Sbjct: 202 SQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISI 261 Query: 257 DGVKGAFEAMMAGKLNVTVECSPLLGPQLMQIAKDIKAGKEVPKRITTEEGIFPAEVAAK 316 DGVKGAFEAMMAGKLNVTVECSPLLGPQLM A+ + AGK VPKRI T+EGIFP EVAAK Sbjct: 262 DGVKGAFEAMMAGKLNVTVECSPLLGPQLMDTARAVLAGKTVPKRIVTKEGIFPMEVAAK 321 Query: 317 EFPNRKY 323 EFPNRKY Sbjct: 322 EFPNRKY 328 >ref|ZP_07673693.1| periplasmic ribose-binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP67897.1| periplasmic ribose-binding protein [Ralstonia sp. 5_7_47FAA] Length = 315 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 255/316 (80%), Positives = 277/316 (87%), Gaps = 4/316 (1%) Query: 8 LLGAAICMSLGSAVSFPAFAADKPLTMGFSQVGAESEWRTANTVSIKDAAKQAGVNLKFA 67 L A + ++ G A + A AADK TMGF+QVGAESEWRTAN+ SIK AK GVNLKF+ Sbjct: 4 LATAGVLLTTGLATA--AHAADKSFTMGFAQVGAESEWRTANSESIKSTAKAQGVNLKFS 61 Query: 68 DAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVILTDRAVNVSDK 127 DAQQKQENQ+KAIRS+IAQKVDVIAFSPVVESGW+TVL+EAKAAKIPVILTDR ++ D Sbjct: 62 DAQQKQENQIKAIRSYIAQKVDVIAFSPVVESGWDTVLQEAKAAKIPVILTDRGIDSKDT 121 Query: 128 SLYVTFIGSDFVEEGRRAGRWLLDKAKSMPAGDINIVELQGTVGSAPAIDRKAGFEEVIK 187 LY TFIGSDFVEEGR+AGRWLL+ K P GD+NIVELQGTVGSAPAIDRK GFEE+IK Sbjct: 122 WLYTTFIGSDFVEEGRKAGRWLLENVK--PKGDVNIVELQGTVGSAPAIDRKRGFEEIIK 179 Query: 188 SEPRLKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIEEAGLKP 247 ++P KIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIEEAGLKP Sbjct: 180 ADPHYKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIEEAGLKP 239 Query: 248 GKDITIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMQIAKDIKAGKEVPKRITTEEG 307 GKDI IISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLM A+ + AGK VPKRI T+EG Sbjct: 240 GKDIVIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMDTARAVLAGKTVPKRIVTKEG 299 Query: 308 IFPAEVAAKEFPNRKY 323 IFP EVAAKEFPNRKY Sbjct: 300 IFPMEVAAKEFPNRKY 315 >ref|YP_970607.1| periplasmic-binding protein/LacI transcriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM32833.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Acidovorax citrulli AAC00-1] Length = 322 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 257/323 (79%), Positives = 280/323 (86%), Gaps = 1/323 (0%) Query: 1 MNSKRRALLGAAICMSLGSAVSFPAFAADKPLTMGFSQVGAESEWRTANTVSIKDAAKQA 60 M R L A+ + +A+ A A KP+ +GFSQVGAESEWRTANT SIK AA+ A Sbjct: 1 MTKLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDA 60 Query: 61 GVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVILTDR 120 G+ LKF+DAQQKQENQ+KAIRSFIAQ+VDVIAFSPVVESGWE VLREAKAAKIPV+LTDR Sbjct: 61 GIELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120 Query: 121 AVNVSDKSLYVTFIGSDFVEEGRRAGRWLLDKAKSMPAGDINIVELQGTVGSAPAIDRKA 180 AVN D SLYVTF+GSDFVEEGR+AGRWL++K K GD+NIVELQGTVGSAPAIDRK Sbjct: 121 AVNTKDTSLYVTFMGSDFVEEGRKAGRWLVEKMKD-AKGDVNIVELQGTVGSAPAIDRKK 179 Query: 181 GFEEVIKSEPRLKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAI 240 GFEEV+K++P+ KIIRSQTGDFTRAKGKEVMEAFLKAEG+KINVLYAHNDDMAIGAIQAI Sbjct: 180 GFEEVVKADPKFKIIRSQTGDFTRAKGKEVMEAFLKAEGRKINVLYAHNDDMAIGAIQAI 239 Query: 241 EEAGLKPGKDITIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMQIAKDIKAGKEVPK 300 EEAGLKPGKDITIISID VKGAFEAMMAGKLNVTVECSPLLGPQLM KDIKAGK VPK Sbjct: 240 EEAGLKPGKDITIISIDAVKGAFEAMMAGKLNVTVECSPLLGPQLMAAVKDIKAGKTVPK 299 Query: 301 RITTEEGIFPAEVAAKEFPNRKY 323 RI TEEGIFP E AA+EFP RKY Sbjct: 300 RIVTEEGIFPMETAAQEFPKRKY 322