BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0832.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774456.1| 2-keto-3-deoxygalactonate kinase [Herbaspiri... 495 e-138 ref|YP_522225.1| 2-keto-3-deoxy-galactonokinase [Rhodoferax ferr... 333 3e-89 ref|YP_003981838.1| 2-dehydro-3-deoxygalactonokinase [Achromobac... 321 1e-85 ref|ZP_06684449.1| 2-dehydro-3-deoxygalactonate kinase [Achromob... 313 3e-83 ref|ZP_03396351.1| 2-dehydro-3-deoxygalactonate kinase [Pseudomo... 313 3e-83 >ref|YP_003774456.1| 2-keto-3-deoxygalactonate kinase [Herbaspirillum seropedicae SmR1] gb|ADJ62548.1| 2-keto-3-deoxygalactonate kinase protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 267/320 (83%), Positives = 287/320 (89%), Gaps = 2/320 (0%) Query: 3 MNQALNQDCALIALDWGTSSLRCYRFDRSGQVVERRAHPWGIMNLPAVGHGEDAHAPYRA 62 MNQ + DCALIALDWGTSSLRCYR+D SGQVVERRAHPWGIMNLPAV HG+DA APYRA Sbjct: 1 MNQN-HHDCALIALDWGTSSLRCYRYDGSGQVVERRAHPWGIMNLPAVEHGDDAQAPYRA 59 Query: 63 ALEAACGDWLKAAPAAPLIAAGMVGSKQGWREAAYLNVPLAPALIGSQLTEVDTGLGRPL 122 ALEAACGDW+ AAP A LIAAGMVGSKQGWREAAYL VPLAP IG +LTEVDTGLGR L Sbjct: 60 ALEAACGDWIAAAPEAALIAAGMVGSKQGWREAAYLTVPLAPDGIGRKLTEVDTGLGRSL 119 Query: 123 WIVPGLLEAGALPNVMRGEETQVIGALQTRTERELLIGLPGTHSKWVRVVEGRIEHFDTF 182 WI+PGLL+ ALPNVMRGEETQVIGALQ + + ELLIGLPGTHSKWVRVVEGRIEHFDTF Sbjct: 120 WIIPGLLQNSALPNVMRGEETQVIGALQQQRQSELLIGLPGTHSKWVRVVEGRIEHFDTF 179 Query: 183 MTGEVYGALCGHTILGRTMQKPEVADDEAFLRGAGVARTAQGKSGVLSNIFSSRTLGLTG 242 MTGEVYGALCGHTILGRTM KP+V DD AF+RGA VA+ QG++GVLSNIFSSRTLGLTG Sbjct: 180 MTGEVYGALCGHTILGRTMHKPDVPDDAAFVRGARVAQGPQGQAGVLSNIFSSRTLGLTG 239 Query: 243 ELAAEAQPDYLSGLLIGHEIAALKNLYPTTPA-IVLIGDPGLCRRYQLALDLYGLGPAAE 301 ELA EAQPDYLSGLLIGHEIAALK+LYP A IVLIGD GLCRRY+LAL+LYGLGP +E Sbjct: 240 ELAPEAQPDYLSGLLIGHEIAALKSLYPAQQAPIVLIGDAGLCRRYRLALELYGLGPVSE 299 Query: 302 AGAATEAGLWILAQHAGLLA 321 A AATEAGLWILA+HAGL+A Sbjct: 300 ADAATEAGLWILARHAGLVA 319 >ref|YP_522225.1| 2-keto-3-deoxy-galactonokinase [Rhodoferax ferrireducens T118] gb|ABD68694.1| 2-keto-3-deoxygalactonate kinase [Rhodoferax ferrireducens T118] Length = 351 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 196/348 (56%), Positives = 233/348 (66%), Gaps = 30/348 (8%) Query: 3 MNQALNQDCALIALDWGTSSLRCYRFDRSGQVVERRAHPWGIMNLPAV----GHGEDAHA 58 MNQA Q LIALDWGTSSLR YR +G+V+E R+ PWG+M LP V G+D A Sbjct: 1 MNQARCQ-TQLIALDWGTSSLRAYRLGAAGRVLELRSLPWGVMKLPEVVLPENSGDDGKA 59 Query: 59 PYRAALEAACGDWLKAAPAAPLIAAGMVGSKQGWREAAYLNVPLAPALIGSQLTEVDTGL 118 + A E ACGDW++AAP AP+IAAGMVGS+QGWREA YL++P+A IGS L+ V T Sbjct: 60 GFEFAFEEACGDWIRAAPHAPVIAAGMVGSRQGWREAPYLSLPIAVDRIGSTLSTVHTRN 119 Query: 119 GRPLWIVPGLLEAGALPNVMRGEETQVIGAL-------------QTRTERELLIGLPGTH 165 G+ + IVPGL+E ALPNVMRGEETQVIGAL Q + E+LIGLPG+H Sbjct: 120 GQIVHIVPGLIENSALPNVMRGEETQVIGALSMLDFGKTPSRAEQQNEQNEILIGLPGSH 179 Query: 166 SKWVRV------VEGRIEHFDTFMTGEVYGALCGHTILGRTMQKPEVADDE--AFLRGAG 217 SKWV+V V+ IEHF TFMTGEVY ALC HTILGR M +V D+ AF RG Sbjct: 180 SKWVQVRIQHREVQSHIEHFHTFMTGEVYAALCEHTILGRGMPTSDVNGDDHAAFDRGVL 239 Query: 218 VARTAQGKSGVLSNIFSSRTLGLTGELAAEAQPDYLSGLLIGHEIAALKNLYPTTP---- 273 V +T G++GVLS IFS+RTLGLTGEL Q +YLSGLLIGHE+AAL++L Sbjct: 240 VPQTPAGRAGVLSTIFSTRTLGLTGELDGAGQREYLSGLLIGHEVAALQDLLAEQRHRPV 299 Query: 274 AIVLIGDPGLCRRYQLALDLYGLGPAAEAGAATEAGLWILAQHAGLLA 321 ++L+GD LC RY AL YGL AG ATE GLW LA AGLL+ Sbjct: 300 RVILVGDAALCVRYTRALRAYGLDQIEVAGQATERGLWQLAIAAGLLS 347 >ref|YP_003981838.1| 2-dehydro-3-deoxygalactonokinase [Achromobacter xylosoxidans A8] gb|ADP19123.1| 2-dehydro-3-deoxygalactonokinase [Achromobacter xylosoxidans A8] Length = 333 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 189/319 (59%), Positives = 220/319 (68%), Gaps = 9/319 (2%) Query: 12 ALIALDWGTSSLRCYRFDRSGQVVERRAHPWGIMNLPAV---GHGEDAHAPYRAALEAAC 68 ALIALDWGTSSLR YR D +G+ ++ R PWGIM LP G A + + A E AC Sbjct: 10 ALIALDWGTSSLRAYRLDAAGRTLDTRHLPWGIMRLPQPLQDGAATTALSGFELAFEQAC 69 Query: 69 GDWLKAAPAAPLIAAGMVGSKQGWREAAYLNVPLAPALIGSQLTEVDTGLGRPLWIVPGL 128 GDWL+A P P+IA GMVGS QGW+EAAYL+VP+ IG+ LT+V+ G L IVPGL Sbjct: 70 GDWLRAEPNLPVIACGMVGSAQGWKEAAYLDVPVDLQRIGTLLTKVEREAGPSLHIVPGL 129 Query: 129 LEAGALPNVMRGEETQVIGALQ---TRTERELLIGLPGTHSKWVRVVEGRIEHFDTFMTG 185 ++ LPNV+RGEETQV+G + TR+ +LIGLPGTHSKWV GR+ HFDTFMTG Sbjct: 130 IQRHGLPNVIRGEETQVVGVMADQATRSADSVLIGLPGTHSKWVSARRGRVTHFDTFMTG 189 Query: 186 EVYGALCGHTILGRTMQKPEVADDEAFLRGAGVARTAQGKSGVLSNIFSSRTLGLTGELA 245 EVY AL GHTILGRTM AD AF RG VA G++GVLS IFS+R LGLTGELA Sbjct: 190 EVYAALRGHTILGRTMADAASADMAAFERGLKVAGAPAGRAGVLSTIFSTRALGLTGELA 249 Query: 246 AEAQPDYLSGLLIGHEIAALKNLYPTT---PAIVLIGDPGLCRRYQLALDLYGLGPAAEA 302 E+Q DYLSGLLIGHEIAAL ++ P IVL GDP LCRRY A+ YGLG +A Sbjct: 250 PESQADYLSGLLIGHEIAALADMLQQQGELPRIVLCGDPALCRRYIQAMQHYGLGTPEQA 309 Query: 303 GAATEAGLWILAQHAGLLA 321 ATE GLW LA AGL+A Sbjct: 310 QNATERGLWHLAVCAGLIA 328 >ref|ZP_06684449.1| 2-dehydro-3-deoxygalactonate kinase [Achromobacter piechaudii ATCC 43553] gb|EFF78641.1| 2-dehydro-3-deoxygalactonate kinase [Achromobacter piechaudii ATCC 43553] Length = 349 Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 185/326 (56%), Positives = 214/326 (65%), Gaps = 17/326 (5%) Query: 12 ALIALDWGTSSLRCYRFDRSGQVVERRAHPWGIMNLPAVGHGEDAHAP---YRAALEAAC 68 ALIALDWGTSSLR YR D +G+ ++ R PWGIM LP A P + A + AC Sbjct: 10 ALIALDWGTSSLRAYRLDNAGRTLDTRHLPWGIMRLPQPLQDGAASTPLSGFDLAFDQAC 69 Query: 69 GDWLKAAPAAPLIAAGMVGSKQGWREAAYLNVPLAPALIGSQLTEVDTGLG----RPLWI 124 GDWL+A P P+IA GMVGS QGW+EAAYL+VP+ IG+ LT V+ PL I Sbjct: 70 GDWLRAEPTLPVIACGMVGSAQGWQEAAYLDVPVDLERIGTLLTVVERPAAGPNATPLHI 129 Query: 125 VPGLLEAGALPNVMRGEETQVIGAL--QTRTER-----ELLIGLPGTHSKWVRVVEGRIE 177 VPGL++ LPNVMRGEETQV G + QTR +LIGLPGTHSKWV GR+ Sbjct: 130 VPGLIQRHGLPNVMRGEETQVFGVMFDQTRGSDAHPADNVLIGLPGTHSKWVNARRGRVT 189 Query: 178 HFDTFMTGEVYGALCGHTILGRTMQKPEVADDEAFLRGAGVARTAQGKSGVLSNIFSSRT 237 HFDTFMTGEVY L GHTILGRTM + D AF RG VA G++GVLS IFS+R Sbjct: 190 HFDTFMTGEVYAVLRGHTILGRTMSEAPAPDMAAFERGVKVAGAPAGRAGVLSTIFSTRA 249 Query: 238 LGLTGELAAEAQPDYLSGLLIGHEIAALKNLYPTT---PAIVLIGDPGLCRRYQLALDLY 294 LGLTGELA+ +Q DYLSGLLIGHEIAAL + P IVL GDP LC RY +A+ Y Sbjct: 250 LGLTGELASTSQADYLSGLLIGHEIAALARMLHEQGELPRIVLCGDPALCERYIVAMQHY 309 Query: 295 GLGPAAEAGAATEAGLWILAQHAGLL 320 GLG +A ATE GLW LA AGL+ Sbjct: 310 GLGTPEQAQNATERGLWHLAVCAGLV 335 >ref|ZP_03396351.1| 2-dehydro-3-deoxygalactonate kinase [Pseudomonas syringae pv. tomato T1] ref|ZP_07232207.1| 2-dehydro-3-deoxygalactonate kinase [Pseudomonas syringae pv. tomato Max13] ref|ZP_07252310.1| 2-dehydro-3-deoxygalactonate kinase [Pseudomonas syringae pv. tomato K40] ref|ZP_07257858.1| 2-dehydro-3-deoxygalactonate kinase [Pseudomonas syringae pv. tomato NCPPB 1108] gb|EEB60736.1| 2-dehydro-3-deoxygalactonate kinase [Pseudomonas syringae pv. tomato T1] gb|EGH98676.1| 2-dehydro-3-deoxygalactonate kinase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 334 Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 177/320 (55%), Positives = 213/320 (66%), Gaps = 11/320 (3%) Query: 13 LIALDWGTSSLRCYRFDRSGQVVERRAHPWGIMNLPAVGH---GEDAHAPYRAALEAACG 69 LIALDWGT+SLR YR GQV+E+RA GIM LP G+ + A + ACG Sbjct: 5 LIALDWGTTSLRAYRLGEHGQVLEQRALSAGIMQLPTTPRLISGQLCSDGFELAFDQACG 64 Query: 70 DWLKAAPAAPLIAAGMVGSKQGWREAAYLNVPLAPALIGSQLTEVDTGLGRPLWIVPGLL 129 DWL A P P+IA GMVGS QGWREAAY P + + + L V + G + I+PG+L Sbjct: 65 DWLDAEPGLPVIACGMVGSAQGWREAAYRETPASVNQLSAALQTVRSQRGVTVHIIPGVL 124 Query: 130 EAGALPNVMRGEETQVIG---ALQTRTERE-LLIGLPGTHSKWVRVVEGRIEHFDTFMTG 185 + LPNVMRGEETQV+G L+T+ + + LLIGLPG+HSKWV+V GRI HFDTFMTG Sbjct: 125 QRSTLPNVMRGEETQVLGVLAGLETQLDNQPLLIGLPGSHSKWVQVTRGRIVHFDTFMTG 184 Query: 186 EVYGALCGHTILGRTMQKPEVADDEAFLRGAGVARTAQGKSGVLSNIFSSRTLGLTGELA 245 EVY ALC HTILGRTMQ E DD+AF RG +A + G +G LS IFS+RTLGLTG+LA Sbjct: 185 EVYAALCAHTILGRTMQPAEAFDDQAFDRGLSIALSDTGSAGPLSTIFSTRTLGLTGQLA 244 Query: 246 AEAQPDYLSGLLIGHEIAALKNLYPTT----PAIVLIGDPGLCRRYQLALDLYGLGPAAE 301 A AQPDYLSGLLIGHE+ A+ L+ T PA++LIG LC RY L + G Sbjct: 245 ASAQPDYLSGLLIGHELGAIARLHLHTHEQLPAVILIGSEALCARYSRGLTVCGFPQVTL 304 Query: 302 AGAATEAGLWILAQHAGLLA 321 A ATE GLW +A AGL+A Sbjct: 305 AEQATERGLWQVAVQAGLIA 324