BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0826.p (390 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774453.1| major facilitator superfamily permease [Herb... 479 e-133 ref|YP_585541.1| major facilitator superfamily permease [Cupriav... 301 1e-79 ref|YP_002006987.1| transporter major facilitator superfamily [C... 281 1e-73 ref|YP_002980468.1| major facilitator superfamily protein [Ralst... 279 6e-73 ref|YP_004687276.1| permease membrane protein MosC [Cupriavidus ... 277 2e-72 >ref|YP_003774453.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ62545.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 343/378 (90%), Positives = 360/378 (95%) Query: 13 PHRIRNATRATMAQFFVNGATFATWGILIPSVKDRFALSDAVLSLAMLAVAGGALLTMGQ 72 PHRIRNATRATMAQFFVNGATFATWG+LIPSVK+RFALSDAVLSLAMLAVAGGALLTMGQ Sbjct: 13 PHRIRNATRATMAQFFVNGATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQ 72 Query: 73 SGKWIARVGSARALRQAGILYAATLLLIPLAPQFWMLVALLLVFGSAMAAFDVAMSVQAA 132 SGKWIARVGSARALRQ GILYAATLLLIPLAPQFWMLV LLLVFGSAMAAFDVAMSVQAA Sbjct: 73 SGKWIARVGSARALRQVGILYAATLLLIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAA 132 Query: 133 LVEGRRTRPIMSTLHAMFSIGGIAGSALGALPGLSPLAHAALVAVVTLSVALSIGPFALP 192 LVEG+RTRPIMSTLHAMFSIGGIAG+ALGA+PGLSPLAHAALV VVTL+V+LSIGPFALP Sbjct: 133 LVEGQRTRPIMSTLHAMFSIGGIAGAALGAVPGLSPLAHAALVGVVTLAVSLSIGPFALP 192 Query: 193 DDVHDETASTPGADKSARRMVLVLGVISFLALMCEGGMYDWAAVYMRDIAQSPAAWVSYS 252 D+VHD A+ GADK ARRMVLVLG I+FLALMCEGGMYDWAAVYMRD+AQSP AWVSYS Sbjct: 193 DEVHDSAATPHGADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRDVAQSPMAWVSYS 252 Query: 253 YAAFSTGMAAGRLTGDRIRARIGGLRTLLWSGVAGAAGIALAAALPTPLATMAGLLLAGL 312 YAAFSTGMAAGRLTGDRIRARIGGLRTL WSG AGAAGIALAAA P+PLAT+ GLLL+GL Sbjct: 253 YAAFSTGMAAGRLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSPLATLGGLLLSGL 312 Query: 313 GIANLMPIFFLAAARVPGMPAAESIAAVARFAYVGMLLGPVCIGGVAEHLGLRVSFVGVA 372 GIANLMPIFFLAAARVPGM AAESIAAVARFAYVGMLLGPV IGGVAEHLGLR+SFVGVA Sbjct: 313 GIANLMPIFFLAAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAEHLGLRLSFVGVA 372 Query: 373 LVMMVVALFGPRAVKRFI 390 LVM VVALFG +AV+RFI Sbjct: 373 LVMTVVALFGGKAVRRFI 390 >ref|YP_585541.1| major facilitator superfamily permease [Cupriavidus metallidurans CH34] gb|ABF10272.1| Permease Membrane protein mosC Major facilitator superfamily MFS_1 [Cupriavidus metallidurans CH34] Length = 400 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 209/389 (53%), Positives = 266/389 (68%), Gaps = 5/389 (1%) Query: 5 SSSAPASHPHRIRNATRATMAQFFVNGATFATWGILIPSVKDRFALSDAVLSLAMLAVAG 64 + +AP P + ATR TMA FF NGATFATWG+ IP++K RF LSDA+LS AMLAVA Sbjct: 12 TETAPPPSPSAVSRATRGTMALFFANGATFATWGVHIPTIKARFGLSDAMLSFAMLAVAA 71 Query: 65 GALLTMGQSGKWIARVGSARALRQAGILYAATLLLIPLAPQFWMLVALLLVFGSAMAAFD 124 GA++ MG G+W+ R+GSARA G+ +A L I P F +L+ LL+FG A AAFD Sbjct: 72 GAIVAMGPVGRWVGRLGSARASMIGGVAFALLTLAIIAMPSFALLLPTLLIFGMANAAFD 131 Query: 125 VAMSVQAALVEGRRTRPIMSTLHAMFSIGGIAGSALGALP---GLSPLAHAALVAVVTLS 181 V M+ QAA+VE RTRP+MS LH MFS+GG+ G+A G L G+ PL HAAL+A +T Sbjct: 132 VGMNAQAAIVEASRTRPVMSALHGMFSLGGMIGAAFGGLMLSLGVPPLVHAALIASLTAG 191 Query: 182 VALSIGPFALPDDVHDETASTPGADKSARRMVLVLGVISFLALMCEGGMYDWAAVYMRDI 241 VA+ + P L D H + + A R + +LG+++FL L+ EG MYDW +VYMRD+ Sbjct: 192 VAIGMTPGLLAD--HPVLPTADHHREHASRALWLLGLMAFLGLVGEGAMYDWTSVYMRDV 249 Query: 242 AQSPAAWVSYSYAAFSTGMAAGRLTGDRIRARIGGLRTLLWSGVAGAAGIALAAALPTPL 301 A +P W+S+ YAAFS GMA GR GDR+RAR G RTL S G AGI LA A+P PL Sbjct: 250 AVAPLGWISFGYAAFSGGMACGRFGGDRLRARFGDARTLTGSAWLGFAGIVLAIAVPLPL 309 Query: 302 ATMAGLLLAGLGIANLMPIFFLAAARVPGMPAAESIAAVARFAYVGMLLGPVCIGGVAEH 361 A + G L GLG AN++PIFF AA+R+PG+ AAE+IA VARFAYVG+LLGPV IGGVA Sbjct: 310 AALIGFGLMGLGAANMVPIFFAAASRLPGVAAAEAIARVARFAYVGLLLGPVLIGGVAHL 369 Query: 362 LGLRVSFVGVALVMMVVALFGPRAVKRFI 390 LR+ VAL M +ALFG +A +R++ Sbjct: 370 SDLRIGITVVALTMGYIALFGAKAARRYL 398 >ref|YP_002006987.1| transporter major facilitator superfamily [Cupriavidus taiwanensis LMG 19424] emb|CAQ70926.1| putative transporter, Major Facilitator Superfamily [Cupriavidus taiwanensis LMG 19424] Length = 399 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 214/379 (56%), Positives = 266/379 (70%), Gaps = 5/379 (1%) Query: 15 RIRNATRATMAQFFVNGATFATWGILIPSVKDRFALSDAVLSLAMLAVAGGALLTMGQSG 74 ++ ATR TMA FFVNGATFATWG+ IP++K RF LSDA+LSLAMLAVAGGA++ MG G Sbjct: 15 QVARATRGTMALFFVNGATFATWGVHIPTIKARFGLSDAMLSLAMLAVAGGAIMAMGPVG 74 Query: 75 KWIARVGSARALRQAGILYAATLLLIPLAPQFWMLVALLLVFGSAMAAFDVAMSVQAALV 134 +W+AR GSARA G+L+A + I P FW+L+ LL FG A AAFDVAM+ QAA V Sbjct: 75 RWVARAGSARASMAGGLLFALATVAILAMPSFWLLLPALLAFGMANAAFDVAMNAQAATV 134 Query: 135 EGRRTRPIMSTLHAMFSIGGIAGSALGALP---GLSPLAHAALVAVVTLSVALSIGPFAL 191 E R RP+MS+LH MFS+GG+AG+ G L + PLAHAAL+A VT +VAL+ P L Sbjct: 135 EASRARPVMSSLHGMFSLGGMAGAGFGGLMLALDVPPLAHAALMAGVTAAVALATLPGLL 194 Query: 192 PDDVHDETASTPGADKSARRMVLVLGVISFLALMCEGGMYDWAAVYMRDIAQSPAAWVSY 251 D H S P A R + +LG+++FL L+ EG MYDW +VYMRD+A++P WVS Sbjct: 195 AD--HPVPPSAPHHCDHAVRALWLLGLLAFLGLIGEGAMYDWTSVYMRDVARAPDGWVSL 252 Query: 252 SYAAFSTGMAAGRLTGDRIRARIGGLRTLLWSGVAGAAGIALAAALPTPLATMAGLLLAG 311 YAAFS GMA GR GDR+RAR+G TL S G AGIALA A+P PLA +AG L G Sbjct: 253 GYAAFSGGMACGRFGGDRLRARLGDSATLTGSAWLGFAGIALALAVPLPLAALAGFALMG 312 Query: 312 LGIANLMPIFFLAAARVPGMPAAESIAAVARFAYVGMLLGPVCIGGVAEHLGLRVSFVGV 371 LG AN++PIFF+AA+R+PG+ AE+IA VARFAYVG+LLGPV IGGVA LR V Sbjct: 313 LGAANMVPIFFVAASRLPGVAPAEAIARVARFAYVGLLLGPVLIGGVAHLASLRAGLALV 372 Query: 372 ALVMMVVALFGPRAVKRFI 390 AL M +AL G R+ + ++ Sbjct: 373 ALTMGWIALAGARSARCYL 391 >ref|YP_002980468.1| major facilitator superfamily protein [Ralstonia pickettii 12D] gb|ACS61796.1| major facilitator superfamily MFS_1 [Ralstonia pickettii 12D] Length = 383 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 197/373 (52%), Positives = 250/373 (67%), Gaps = 6/373 (1%) Query: 18 NATRATMAQFFVNGATFATWGILIPSVKDRFALSDAVLSLAMLAVAGGALLTMGQSGKWI 77 +A ATMA FF NGATFATWGI IP+VK RF LS+A LSLAM VA GA++ M +G+W Sbjct: 9 SARAATMALFFANGATFATWGIHIPTVKARFGLSEASLSLAMFMVAAGAIVAMKFAGQWA 68 Query: 78 ARVGSARALRQAGILYAATLLLIPLAPQFWMLVALLLVFGSAMAAFDVAMSVQAALVEGR 137 ARVG+ RA Q G+ + LI L P + L+A+LL+FG A FDVAM+ QAA VE Sbjct: 69 ARVGTRRASVQGGVAFGVMTALIMLMPTYPALLAVLLLFGITNAGFDVAMNAQAATVEAN 128 Query: 138 RTRPIMSTLHAMFSIGGIAGSALGALP---GLSPLAHAALVAVVTLSVALSIGPFALPDD 194 +PI+S+LH MFS+GG+AG+A+G + G+ P H +A+VT++ AL GPF LPD Sbjct: 129 HHKPIISSLHGMFSLGGMAGAAVGGVLLELGVPPAVHCGGMALVTMAAALCAGPFMLPDH 188 Query: 195 VHDETASTPGADKSARRMVLVLGVISFLALMCEGGMYDWAAVYMRDIAQSPAAWVSYSYA 254 +H E S A + R + +LGV++FL L+ EG MYDW VYMR+IAQSP A S YA Sbjct: 189 MHAEGES---AHPTTGRTLFLLGVLAFLGLVGEGAMYDWTTVYMREIAQSPEAIASAGYA 245 Query: 255 AFSTGMAAGRLTGDRIRARIGGLRTLLWSGVAGAAGIALAAALPTPLATMAGLLLAGLGI 314 AFS GMA R GD R R G +R L SGV GI LA P P+A + G L G+G Sbjct: 246 AFSGGMALARFGGDFARGRWGNMRVLGASGVLATGGILLALLWPAPMAVLTGFALMGVGA 305 Query: 315 ANLMPIFFLAAARVPGMPAAESIAAVARFAYVGMLLGPVCIGGVAEHLGLRVSFVGVALV 374 AN++PIFF+ A+R+PG+PAAE IAAVARFAYVG+L+GPV IG +A LR VAL Sbjct: 306 ANMVPIFFITASRLPGVPAAEGIAAVARFAYVGLLIGPVIIGLIAHRSDLRWGLSVVALT 365 Query: 375 MMVVALFGPRAVK 387 M ++AL GPRA++ Sbjct: 366 MAMIALAGPRAIR 378 >ref|YP_004687276.1| permease membrane protein MosC [Cupriavidus necator N-1] gb|AEI78795.1| permease membrane protein MosC [Cupriavidus necator N-1] Length = 432 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 216/392 (55%), Positives = 272/392 (69%), Gaps = 7/392 (1%) Query: 2 HSGSSSAPASHPHRIRNATRATMAQFFVNGATFATWGILIPSVKDRFALSDAVLSLAMLA 61 HS ++SAP P + ATR TMA FFVNGATFATWG+ IP++K RF LSDA+LSLAMLA Sbjct: 30 HSPTASAPL--PAVVSRATRGTMALFFVNGATFATWGVHIPTIKARFGLSDAMLSLAMLA 87 Query: 62 VAGGALLTMGQSGKWIARVGSARALRQAGILYAATLLLIPLAPQFWMLVALLLVFGSAMA 121 VAGGA+L MG G+W+AR GSARA G+L+A + I P FW+L+ L FG A A Sbjct: 88 VAGGAILAMGPVGRWVARAGSARASMTGGLLFALATVAILAMPSFWLLLPALAAFGMANA 147 Query: 122 AFDVAMSVQAALVEGRRTRPIMSTLHAMFSIGGIAGSALGALP---GLSPLAHAALVAVV 178 AFDVAM+ QAA VE RTRP+MS LH MFS+GG+AG+ G L G++PLAHAA++A + Sbjct: 148 AFDVAMNAQAATVEAGRTRPVMSALHGMFSLGGMAGAGAGGLMLSLGVAPLAHAAMMAGM 207 Query: 179 TLSVALSIGPFALPDDVHDETASTPGADKSARRMVLVLGVISFLALMCEGGMYDWAAVYM 238 T +VAL P L D H S A R + +LG+++FL L+ EG MYDW +VYM Sbjct: 208 TATVALGTLPGLLAD--HPVLPSAAHHRDHAVRALWLLGLLAFLGLIGEGAMYDWTSVYM 265 Query: 239 RDIAQSPAAWVSYSYAAFSTGMAAGRLTGDRIRARIGGLRTLLWSGVAGAAGIALAAALP 298 RD+AQ+P W+S YAAFS GMA GR GDR+RAR+G TL S G GIALA +P Sbjct: 266 RDVAQAPDGWISLGYAAFSGGMACGRFGGDRLRARLGDGATLTGSAWLGFGGIALALLVP 325 Query: 299 TPLATMAGLLLAGLGIANLMPIFFLAAARVPGMPAAESIAAVARFAYVGMLLGPVCIGGV 358 PLA +AG L GLG AN++PIFF+AA+R+PG+ AE+I+ VARFAY+G+LLGPV IGGV Sbjct: 326 LPLAALAGFTLMGLGAANMVPIFFVAASRLPGVAPAEAISRVARFAYLGLLLGPVLIGGV 385 Query: 359 AEHLGLRVSFVGVALVMMVVALFGPRAVKRFI 390 A LR+ VAL M +AL G R+ +R++ Sbjct: 386 AHLANLRIGLALVALTMGWIALAGARSARRYL 417