BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0824.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004348180.1| Transcriptional regulator, LysR family prote... 336 2e-90 ref|YP_002907909.1| LysR family transcriptional regulator [Burkh... 332 6e-89 ref|YP_004349054.1| Transcriptional regulator, LysR family prote... 303 2e-80 ref|YP_003692370.1| LysR family transcriptional regulator [Stark... 295 8e-78 ref|ZP_08633834.1| LysR family transcriptional regulator [Acidip... 271 7e-71 >ref|YP_004348180.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gb|AEA62668.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 302 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 198/297 (66%), Positives = 231/297 (77%), Gaps = 1/297 (0%) Query: 1 MELRQLRQFIALAEEKSFTRAATRCHVVQSALSSSIRLLEEELAAALFVRTTRRVELTAA 60 MELRQLR F+A+AEE +FTRAA RCH+VQSALS+SIRLLEEEL A L VRTTRRV L+AA Sbjct: 1 MELRQLRHFVAVAEEANFTRAAERCHIVQSALSTSIRLLEEELGAKLLVRTTRRVSLSAA 60 Query: 61 GEAFLESARRSLAALEQGATNVADVNAMRRGRLSIGTVQSLPSFVDLPALLARFHRRHPA 120 G FL+SARR+L L++ VAD+ ++RRG+LSIGTVQSLP F++LP LL+RF++ HP Sbjct: 61 GAVFLDSARRALDILDRAGLEVADITSVRRGKLSIGTVQSLPQFLELPGLLSRFYQAHPG 120 Query: 121 VEVRLCQGAAGELNEKIDARQLDLAILPVEESGEGLQQHIIACDELVLACHPSHRLSKAR 180 VEVRL QG A ELNEK+ AR+LDLAILP+EE E L+ HIIACDE+VLAC H L+ A Sbjct: 121 VEVRLVQGGALELNEKVGARELDLAILPIEERNERLESHIIACDEMVLACGRDHPLASAG 180 Query: 181 SVTLEQLAGEGFVDFETGLGTRALVDRGFAEAGLRRRVAFEVSDLVTLLDLVGHGLGVAL 240 SV L +L E FVDF G GTR LVDRGFAEAGL+RRVAFE+ DL TLLDLV GLG+AL Sbjct: 181 SVPLARLTREAFVDFVPGQGTRRLVDRGFAEAGLQRRVAFEIGDLDTLLDLVCQGLGIAL 240 Query: 241 LPRDLVHARRGKLASVKLRGVELCWELVVTHKAAARNGVLV-LDAAPAAFLELLMEQ 296 LP D+V R LA V+L ELCWELVVTH AAA V LD APAAFLE+LM + Sbjct: 241 LPEDIVVRRPEMLACVRLERAELCWELVVTHAAAAAGDVTEGLDPAPAAFLEMLMAE 297 >ref|YP_002907909.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gb|ACR30674.1| Transcriptional regulator, LysR family [Burkholderia glumae BGR1] Length = 302 Score = 332 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 192/301 (63%), Positives = 230/301 (76%), Gaps = 1/301 (0%) Query: 1 MELRQLRQFIALAEEKSFTRAATRCHVVQSALSSSIRLLEEELAAALFVRTTRRVELTAA 60 MELRQLR F+A+AEE +FTRAA RCH+VQSALS+SIRLLEEEL A L VRTTRRV L+AA Sbjct: 1 MELRQLRHFVAVAEEANFTRAAERCHIVQSALSTSIRLLEEELGARLLVRTTRRVSLSAA 60 Query: 61 GEAFLESARRSLAALEQGATNVADVNAMRRGRLSIGTVQSLPSFVDLPALLARFHRRHPA 120 G FL+SARR+L L++ VAD+ ++RRG+LSIGTVQSLP F++LPALL+RF+ HP Sbjct: 61 GAVFLDSARRALDILDRAGLEVADITSVRRGKLSIGTVQSLPQFLELPALLSRFYHAHPG 120 Query: 121 VEVRLCQGAAGELNEKIDARQLDLAILPVEESGEGLQQHIIACDELVLACHPSHRLSKAR 180 VEVRL QG A ELNEK+DAR+LDLAILP+EE E L H+IACDE+VLAC H L+ + Sbjct: 121 VEVRLVQGGAAELNEKVDARELDLAILPIEERNERLASHVIACDEMVLACRRDHPLAASG 180 Query: 181 SVTLEQLAGEGFVDFETGLGTRALVDRGFAEAGLRRRVAFEVSDLVTLLDLVGHGLGVAL 240 V L +L + FVDF G GTR LVDRGFAEAGL+RRVAFE+ DL TLL+LV GLGVAL Sbjct: 181 QVPLSRLTKQAFVDFVPGQGTRRLVDRGFAEAGLQRRVAFEIGDLDTLLELVRQGLGVAL 240 Query: 241 LPRDLVHARRGKLASVKLRGVELCWELVVTHKA-AARNGVLVLDAAPAAFLELLMEQAQA 299 LP D+V R LA V+L +LCWELVVTH A AA + LD AP AFL++LM + Sbjct: 241 LPEDIVVRRPDMLACVRLEQTQLCWELVVTHAASAAGDAPDPLDPAPVAFLDMLMAETAG 300 Query: 300 R 300 + Sbjct: 301 Q 301 >ref|YP_004349054.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gb|AEA63542.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 309 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 183/297 (61%), Positives = 213/297 (71%) Query: 1 MELRQLRQFIALAEEKSFTRAATRCHVVQSALSSSIRLLEEELAAALFVRTTRRVELTAA 60 MELRQLR F+A+AEE +FTRAA RCH+VQSALS+SIRLLEEEL L VRTTR V L+ A Sbjct: 1 MELRQLRHFVAVAEEANFTRAAERCHIVQSALSTSIRLLEEELGTRLLVRTTRHVSLSEA 60 Query: 61 GEAFLESARRSLAALEQGATNVADVNAMRRGRLSIGTVQSLPSFVDLPALLARFHRRHPA 120 G AFLESAR +L L++ VA + + RR LSIG VQSLP F+ LPALL+RF R HP Sbjct: 61 GVAFLESARSALGILDRAVAGVARMRSARRRTLSIGIVQSLPPFLALPALLSRFDRAHPQ 120 Query: 121 VEVRLCQGAAGELNEKIDARQLDLAILPVEESGEGLQQHIIACDELVLACHPSHRLSKAR 180 VEVRL Q A LN +++ RQLDLAILP++E E L I+ACD +VLAC H L++A Sbjct: 121 VEVRLVQDTADVLNARVEDRQLDLAILPIDERNERLVSRIVACDRMVLACDRGHPLARAA 180 Query: 181 SVTLEQLAGEGFVDFETGLGTRALVDRGFAEAGLRRRVAFEVSDLVTLLDLVGHGLGVAL 240 SVTL+QL GE FVDF G GTR VDRGFA AGL+R VAFEV DL TLLDLV GLGVA+ Sbjct: 181 SVTLDQLMGEAFVDFVPGQGTRGSVDRGFAAAGLQRGVAFEVGDLDTLLDLVSQGLGVAV 240 Query: 241 LPRDLVHARRGKLASVKLRGVELCWELVVTHKAAARNGVLVLDAAPAAFLELLMEQA 297 LP D+V R + A V + LCWELVVTH AAA LD APAAFL +L+ A Sbjct: 241 LPEDIVARRAERFACVGIEAENLCWELVVTHLAAAGYPDDTLDPAPAAFLAMLLAGA 297 >ref|YP_003692370.1| LysR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH87751.1| transcriptional regulator, LysR family [Starkeya novella DSM 506] Length = 305 Score = 295 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 174/298 (58%), Positives = 214/298 (71%) Query: 1 MELRQLRQFIALAEEKSFTRAATRCHVVQSALSSSIRLLEEELAAALFVRTTRRVELTAA 60 MELR L+ FIA+AEE+ FTRAA R ++VQSALSSSIR LEEEL A LF+RTTR+V LTAA Sbjct: 1 MELRHLQHFIAVAEEQHFTRAAQRANIVQSALSSSIRALEEELDARLFLRTTRQVRLTAA 60 Query: 61 GEAFLESARRSLAALEQGATNVADVNAMRRGRLSIGTVQSLPSFVDLPALLARFHRRHPA 120 GEAFLE ARR L A+ + V+ A+ RG L IG V SLP+F+DLPALLA FH +P Sbjct: 61 GEAFLEKARRVLDAVREAREAVSSAAALERGTLDIGAVPSLPAFIDLPALLAAFHALYPG 120 Query: 121 VEVRLCQGAAGELNEKIDARQLDLAILPVEESGEGLQQHIIACDELVLACHPSHRLSKAR 180 +EVRL QG + L EK+ A LDLAILP+ E + ++AC+ LVL C P+H L+ Sbjct: 121 IEVRLSQGGSEPLTEKLRAGTLDLAILPLCEPVPDIAASVVACEGLVLVCAPAHPLAGRT 180 Query: 181 SVTLEQLAGEGFVDFETGLGTRALVDRGFAEAGLRRRVAFEVSDLVTLLDLVGHGLGVAL 240 VTL +LAGE FVDF+ G GTR LVD+GF +AGL RR+AFEVSDL +LL LV GLGVAL Sbjct: 181 EVTLAELAGEPFVDFQPGWGTRRLVDKGFGQAGLERRIAFEVSDLDSLLALVARGLGVAL 240 Query: 241 LPRDLVHARRGKLASVKLRGVELCWELVVTHKAAARNGVLVLDAAPAAFLELLMEQAQ 298 +P + ARR LA V + G +LCWELVV H A R G+ LD AP AFL+L++ +A+ Sbjct: 241 VPETVAEARRDMLAVVDIAGPDLCWELVVAHLAPGRGGMSALDEAPRAFLDLMLSRAE 298 >ref|ZP_08633834.1| LysR family transcriptional regulator [Acidiphilium sp. PM] gb|EGO94376.1| LysR family transcriptional regulator [Acidiphilium sp. PM] Length = 303 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 162/295 (54%), Positives = 195/295 (66%), Gaps = 5/295 (1%) Query: 1 MELRQLRQFIALAEEKSFTRAATRCHVVQSALSSSIRLLEEELAAALFVRTTRRVELTAA 60 MELRQL F+ALAEE+ FTRAA R ++VQSALS+SIR LE EL A LFVR+TR V LT A Sbjct: 1 MELRQLHHFVALAEERQFTRAARRVNIVQSALSTSIRALERELDAPLFVRSTRDVRLTGA 60 Query: 61 GEAFLESARRSLAALEQGATNVADVNAMRRGRLSIGTVQSLPSFVDLPALLARFHRRHPA 120 GE FLE AR ++ A+ + VA+V ++RG L IGTVQSLP+F+DLP LLARFH+RHP Sbjct: 61 GEIFLEKARLAIEAVRDARSAVAEVQGLKRGTLKIGTVQSLPAFLDLPLLLARFHQRHPG 120 Query: 121 VEVRLCQGAAGELNEKIDARQLDLAILPVEESGEGLQQHIIACDELVLACHPSHRLSKAR 180 +E+RL QG++ L ++ A +D A PV L +IACDE+VLAC H L Sbjct: 121 IEIRLIQGSSSALADRTRAGGIDAAFFPVGTHLTDLVTTMIACDEVVLACPRGHPLEGLT 180 Query: 181 SVTLEQLAGEGFVDFETGLGTRALVDRGFAEAGLRRRVAFEVSDLVTLLDLVGHGLGVAL 240 VTLE + FVDFETG GTR LVD F +AG+ R AFEVSDL T+L LV GLG+AL Sbjct: 181 GVTLEAIKDFPFVDFETGWGTRRLVDGRFGDAGIGRHTAFEVSDLDTMLKLVSLGLGIAL 240 Query: 241 LPRDLVHARRGKLASVKLRGVELCWELVVTHKAAARNGVLVLDAAPAAFLELLME 295 LP +V AR + +L ELCWELVV H A G V AAFL LL E Sbjct: 241 LPETVVVARDPDIGMARLSSPELCWELVVAHLPVAGPGTPV-----AAFLSLLHE 290