BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0822.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774449.1| DeoR family transcription repressor protein ... 483 e-134 ref|YP_004752848.1| deoxyribose operon repressor, deoR family [C... 337 2e-90 ref|YP_004153415.1| DeoR family transcriptional regulator [Vario... 305 6e-81 ref|YP_001243560.1| DeoR family transcriptional regulator [Brady... 258 6e-67 ref|ZP_06896960.1| DeoR family transcriptional regulator [Roseom... 228 7e-58 >ref|YP_003774449.1| DeoR family transcription repressor protein [Herbaspirillum seropedicae SmR1] gb|ADJ62541.1| DeoR family transcription repressor protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 247/272 (90%), Positives = 259/272 (95%), Gaps = 1/272 (0%) Query: 1 MASMTPTPSAKTAQPTLGERSRSLRLSRMQEMIREQGPTPLARIAEVLGVTVMTVRRDLA 60 MAS T TPS K AQPTLG RSR+LRL+RMQEMIR+ GPTPL+RIA+VLGVTVMTVRRDLA Sbjct: 1 MAS-TSTPSTKAAQPTLGARSRALRLTRMQEMIRDHGPTPLSRIADVLGVTVMTVRRDLA 59 Query: 61 ADDSPLICLGGHVLESSPGAGENRYSIDREADQHAQRKRLACQRAAQRVQEGDSIFIDCG 120 +DSPLICLGGHVLE+SPG ENRYSIDREADQHAQRKRLACQ AA+RV EGDS+FIDCG Sbjct: 60 GEDSPLICLGGHVLEASPGGSENRYSIDREADQHAQRKRLACQHAARRVVEGDSLFIDCG 119 Query: 121 TTMTHLAEALPVDIGLSVICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYL 180 TTMTHLAEALP +IGLSVICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYL Sbjct: 120 TTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYL 179 Query: 181 KRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYS 240 KRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAI SAA+CYVVIDQSKLGRFRPAFYS Sbjct: 180 KRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIESAAQCYVVIDQSKLGRFRPAFYS 239 Query: 241 TLEVFSGIVVGGTPEQDQLDLFSDFPIEVVAG 272 TLEVFSGIVVGGTPEQDQLDLFSDFP+EVVAG Sbjct: 240 TLEVFSGIVVGGTPEQDQLDLFSDFPLEVVAG 271 >ref|YP_004752848.1| deoxyribose operon repressor, deoR family [Collimonas fungivorans Ter331] gb|AEK62025.1| Deoxyribose operon repressor, DeoR family [Collimonas fungivorans Ter331] Length = 344 Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 164/256 (64%), Positives = 201/256 (78%) Query: 16 TLGERSRSLRLSRMQEMIREQGPTPLARIAEVLGVTVMTVRRDLAADDSPLICLGGHVLE 75 T G ++R+LRL RMQE+I +GPT L ++AE LGVT MT+RRDLA+ DSPL CLGG VLE Sbjct: 85 TAGAKARTLRLVRMQELINSKGPTQLGKVAEQLGVTEMTIRRDLASADSPLACLGGFVLE 144 Query: 76 SSPGAGENRYSIDREADQHAQRKRLACQRAAQRVQEGDSIFIDCGTTMTHLAEALPVDIG 135 ++ + + +YS+D E D H RKRLACQRAAQ V++GDS+FIDCGTTM H AEALP + Sbjct: 145 ATLPSADEKYSLDEEIDHHTVRKRLACQRAAQWVEDGDSLFIDCGTTMIHFAEALPPAMT 204 Query: 136 LSVICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGV 195 LSV+CYS+NIA IVS+RPNTQ+ILLGGLYHPSSA+F S+E V YL LGVNKAFLSAGG Sbjct: 205 LSVVCYSMNIAAIVSRRPNTQLILLGGLYHPSSATFYSDEAVHYLGSLGVNKAFLSAGGA 264 Query: 196 DARRGVSCSNFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPE 255 D +RG SCSNFHEV +KQAAI SA + ++V+D+SKLGR RPAF+S L+VFS I VGG P+ Sbjct: 265 DLQRGASCSNFHEVAVKQAAIRSAGQSFLVVDESKLGRVRPAFFSPLDVFSRIAVGGVPD 324 Query: 256 QDQLDLFSDFPIEVVA 271 F P++V A Sbjct: 325 AALRKQFKGLPLDVAA 340 >ref|YP_004153415.1| DeoR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35304.1| transcriptional regulator, DeoR family [Variovorax paradoxus EPS] Length = 260 Score = 305 bits (780), Expect = 6e-81, Method: Composition-based stats. Identities = 151/254 (59%), Positives = 198/254 (77%), Gaps = 3/254 (1%) Query: 16 TLGERSRSLRLSRMQEMIREQGPTPLARIAEVLGVTVMTVRRDLAADDSPLICLGGHVLE 75 T G +R++RL++MQE++ GP P+ + A+ L VT MT+RRDL++ DSPL LGG+VL Sbjct: 4 TAGAEARAVRLAKMQELVEAGGPLPIKQAAQRLDVTEMTIRRDLSSADSPLSVLGGYVLA 63 Query: 76 SS-PGAGENRYSIDREADQHAQRKRLACQRAAQRVQEGDSIFIDCGTTMTHLAEALPVDI 134 ++ PGA RYS+D +DQHA KRLAC+RAA+ VQ DS+FIDCGTTM H AEALP D+ Sbjct: 64 TTLPGA--ERYSLDEASDQHAANKRLACERAAEWVQPHDSLFIDCGTTMVHFAEALPPDM 121 Query: 135 GLSVICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGG 194 LSV+CYS NIA ++S+RPNTQ++L+GGLYHPSSA+F S+EG+ YL +LGVNKAF+SAGG Sbjct: 122 PLSVVCYSTNIAAVLSRRPNTQLMLMGGLYHPSSATFFSDEGLQYLDKLGVNKAFISAGG 181 Query: 195 VDARRGVSCSNFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTP 254 +D RG SCSNFHEVP+KQAAI SA+E ++++D+SKLG RPAF+S L+ F+ IVVGG P Sbjct: 182 LDVARGASCSNFHEVPVKQAAIRSASESFLIVDESKLGTLRPAFFSPLQAFARIVVGGAP 241 Query: 255 EQDQLDLFSDFPIE 268 F + P+E Sbjct: 242 AAAVKKQFKELPVE 255 >ref|YP_001243560.1| DeoR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ39654.1| transcriptional regulator, DeoR family [Bradyrhizobium sp. BTAi1] Length = 264 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 140/269 (52%), Positives = 189/269 (70%), Gaps = 7/269 (2%) Query: 4 MTPTPSAKTAQPTLGERSRSLRLSRMQEMIREQGPTPLARIAEVLGVTVMTVRRDLAADD 63 M TP+A++++ SR RL R++ + G L A++L V+ MTVRRDLA + Sbjct: 1 MAETPTARSSE------SRVQRLQRLRRAVETSGALHLKDAADLLKVSEMTVRRDLAGPE 54 Query: 64 SPLICLGGHVLESSPGAGENRYSIDREADQHAQRKRLACQRAAQRVQEGDSIFIDCGTTM 123 + L LGG+V+ ++ G +Y+ ++E DQH Q KRLAC+ AA ++EGD+IFIDCGTTM Sbjct: 55 AALALLGGYVVNAASPTGI-KYAFEQEIDQHTQDKRLACRSAAASIKEGDTIFIDCGTTM 113 Query: 124 THLAEALPVDIGLSVICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRL 183 LA+ LP D+ LSVICYSLN+ IV++RP TQV+L+GGLYHPSS SF+S++G++YL+RL Sbjct: 114 QSLADCLPEDMPLSVICYSLNVVTIVTRRPATQVMLMGGLYHPSSQSFSSDDGLSYLRRL 173 Query: 184 GVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYSTLE 243 GVNKAF+SAGG+ RG SCSNFHEV IKQA IA+A E +V+D SKLG +PAF+S + Sbjct: 174 GVNKAFISAGGLHWTRGASCSNFHEVAIKQAVIATAMESILVVDASKLGSLKPAFFSDVS 233 Query: 244 VFSGIVVGGTPEQDQLDLFSDFPIEVVAG 272 FS I+VGG + F P+E V G Sbjct: 234 SFSRIIVGGAVPSETRKHFRGLPVEYVTG 262 >ref|ZP_06896960.1| DeoR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gb|EFH11346.1| DeoR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 272 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 119/237 (50%), Positives = 170/237 (71%), Gaps = 4/237 (1%) Query: 17 LGERSRSLRLSRMQEMIREQGPTPLARIAEVLGVTVMTVRRDLA----ADDSPLICLGGH 72 L + R RL+R++ +++E GP L A LGV+ MT+RRDLA A+ L LGGH Sbjct: 9 LTSQRRGERLARLEALLQESGPARLEEAARQLGVSSMTLRRDLARPGLAESRGLALLGGH 68 Query: 73 VLESSPGAGENRYSIDREADQHAQRKRLACQRAAQRVQEGDSIFIDCGTTMTHLAEALPV 132 V+ + Y+++RE DQHA KR A Q AA+ V+EGD++FIDCGTT HL +ALP Sbjct: 69 VVPARASPRPGPYALEREQDQHAAAKRQAAQHAARLVREGDTLFIDCGTTTPHLVQALPP 128 Query: 133 DIGLSVICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSA 192 + L+V+CY+LNIA ++++RPNT+++LLGGLYHP + +F+S+E +A L+RL +N AFLSA Sbjct: 129 GLALTVVCYALNIATLLARRPNTRLVLLGGLYHPGATTFSSDESLASLRRLRLNTAFLSA 188 Query: 193 GGVDARRGVSCSNFHEVPIKQAAIASAAECYVVIDQSKLGRFRPAFYSTLEVFSGIV 249 GVDA +G +C +F+EVP+KQ A+A AA+ +V+D SKLG+ RPA+++ L FS IV Sbjct: 189 AGVDAAQGATCVHFNEVPVKQMALAGAAQRVLVVDGSKLGQLRPAYFAPLSAFSRIV 245