BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0821.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774448.1| 2-deoxyribose-5-phosphate aldolase [Herbaspi... 635 e-180 ref|YP_004153414.1| deoxyribose-phosphate aldolase [Variovorax p... 501 e-140 ref|YP_002823491.1| deoxyribose-phosphate aldolase [Sinorhizobiu... 496 e-138 gb|AEG08168.1| deoxyribose-phosphate aldolase [Sinorhizobium mel... 492 e-137 ref|NP_437344.1| deoxyribose-phosphate aldolase [Sinorhizobium m... 489 e-136 >ref|YP_003774448.1| 2-deoxyribose-5-phosphate aldolase [Herbaspirillum seropedicae SmR1] gb|ADJ62540.1| 2-deoxyribose-5-phosphate aldolase protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 326/343 (95%), Positives = 333/343 (97%) Query: 1 MNMTSKTPSLRATQGEADIVREDSAPAGHPRNGVQPYDAAAFEHLRINLSAAEKRVATLK 60 MNMT KTPSLR+ QGEAD+ + DSAP GHPRN VQ YDAAAFEHLRINLSAAEKRVATLK Sbjct: 1 MNMTRKTPSLRSAQGEADVAQPDSAPTGHPRNSVQAYDAAAFEHLRINLSAAEKRVATLK 60 Query: 61 GRRSVKKDAQAAWLLKAITCIDLTTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQARG 120 GRRSVKKDAQAAWLLKAITCIDLTTLSGDDTPQRVRRLCAKAANP+RADLLEALGMQ RG Sbjct: 61 GRRSVKKDAQAAWLLKAITCIDLTTLSGDDTPQRVRRLCAKAANPLRADLLEALGMQDRG 120 Query: 121 LTTGAVCVYHRFVKTAVEALEGKNIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEID 180 LTTGAVCVYHRFVKTAV+ALEGK IPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEID Sbjct: 121 LTTGAVCVYHRFVKTAVDALEGKGIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEID 180 Query: 181 IVITREHVLTGNWEALYREMRDFRQACGDAHVKAILATGELKTLRNVAKASMVCMMAGAD 240 IVITREHVLTGNWEALYREMRDFRQACG+AHVKAILATGELKTLRNVAKASMVCMMAGAD Sbjct: 181 IVITREHVLTGNWEALYREMRDFRQACGEAHVKAILATGELKTLRNVAKASMVCMMAGAD 240 Query: 241 FIKTSTGKESVNATPLVSLVMLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEE 300 FIKTSTGKESVNATPLVSLVMLRMIRQYQEMTGI+VGYKPAGGVATAKDVLEYQVLMKEE Sbjct: 241 FIKTSTGKESVNATPLVSLVMLRMIRQYQEMTGIKVGYKPAGGVATAKDVLEYQVLMKEE 300 Query: 301 LGDDWLQPDLFRVGASSLLADIERQLEHHVTGRYSAFNRHAIG 343 LG DWLQPDLFRVGASSLLADIERQLEHHVTGRYSAFNRHAIG Sbjct: 301 LGHDWLQPDLFRVGASSLLADIERQLEHHVTGRYSAFNRHAIG 343 >ref|YP_004153414.1| deoxyribose-phosphate aldolase [Variovorax paradoxus EPS] gb|ADU35303.1| deoxyribose-phosphate aldolase [Variovorax paradoxus EPS] Length = 359 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 261/320 (81%), Positives = 278/320 (86%) Query: 24 SAPAGHPRNGVQPYDAAAFEHLRINLSAAEKRVATLKGRRSVKKDAQAAWLLKAITCIDL 83 + P RN QP+D+ FE +RINLSAAE+RVATL GRRSVKKDAQA WLLKAITCIDL Sbjct: 40 AQPHAAARNTAQPFDSGWFEGIRINLSAAERRVATLPGRRSVKKDAQAGWLLKAITCIDL 99 Query: 84 TTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFVKTAVEALEGK 143 TTL+GDDT +RVRRLCAKA PVRADLL ALG R L TGAVCVYHRFV TAVEAL G Sbjct: 100 TTLNGDDTAERVRRLCAKAVTPVRADLLAALGFADRTLHTGAVCVYHRFVSTAVEALAGT 159 Query: 144 NIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNWEALYREMRDF 203 IPVAAVSTGFPAGL PH LKLKEIEASVRDGAAEIDIVITRE VLTG W+ LY EMRDF Sbjct: 160 GIPVAAVSTGFPAGLIPHELKLKEIEASVRDGAAEIDIVITREQVLTGQWQKLYDEMRDF 219 Query: 204 RQACGDAHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNATPLVSLVMLR 263 R A G+AHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKE VNATPLV+LVMLR Sbjct: 220 RSAAGNAHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKEGVNATPLVTLVMLR 279 Query: 264 MIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLFRVGASSLLADIE 323 MIRQY+ TG +VGYKPAGGV+TAK L+YQVLMKEELG WL+PDLFR+GAS+LLADIE Sbjct: 280 MIRQYEARTGFRVGYKPAGGVSTAKTALDYQVLMKEELGRAWLEPDLFRIGASTLLADIE 339 Query: 324 RQLEHHVTGRYSAFNRHAIG 343 RQLEHHVTGRYSAFNRH IG Sbjct: 340 RQLEHHVTGRYSAFNRHPIG 359 >ref|YP_002823491.1| deoxyribose-phosphate aldolase [Sinorhizobium fredii NGR234] gb|ACP22738.1| deoxyribose-phosphate aldolase [Sinorhizobium fredii NGR234] Length = 336 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 257/330 (77%), Positives = 281/330 (85%), Gaps = 2/330 (0%) Query: 16 EADIVREDSAPAGH--PRNGVQPYDAAAFEHLRINLSAAEKRVATLKGRRSVKKDAQAAW 73 +A V A GH PRN D + R+NLSAAE+RVATL GRR+VKKDAQAAW Sbjct: 7 KAGAVSAKPAGTGHNWPRNDGVDLDLSWVLDQRVNLSAAERRVATLPGRRTVKKDAQAAW 66 Query: 74 LLKAITCIDLTTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFV 133 LLKA+TCIDLTTL+GDDT +RV+RLCAKA PVR DLL+ALGM R +TTGA+CVYHRFV Sbjct: 67 LLKAVTCIDLTTLNGDDTTERVKRLCAKARRPVRQDLLDALGMGDRDITTGAICVYHRFV 126 Query: 134 KTAVEALEGKNIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNW 193 TAVEAL+G IPVAAVSTGFPAGL PH LKLKEIEASV DGA EIDIVITREHVLTGNW Sbjct: 127 STAVEALDGSGIPVAAVSTGFPAGLVPHGLKLKEIEASVADGAREIDIVITREHVLTGNW 186 Query: 194 EALYREMRDFRQACGDAHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNA 253 +ALY EMRDFR ACGDAHVKAILATG+LKTLRNVA+AS+VCMMAGADFIKTSTGKE VNA Sbjct: 187 QALYDEMRDFRDACGDAHVKAILATGDLKTLRNVARASLVCMMAGADFIKTSTGKEGVNA 246 Query: 254 TPLVSLVMLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLFRV 313 T LV+LVMLRMIR YQE TGI+VGYKPAGG++ AKDVL YQ LMKEELG +WL+PDLFRV Sbjct: 247 TLLVTLVMLRMIRAYQERTGIKVGYKPAGGISAAKDVLNYQFLMKEELGREWLEPDLFRV 306 Query: 314 GASSLLADIERQLEHHVTGRYSAFNRHAIG 343 GASSLLADIERQLEHHV+G YSA NRH IG Sbjct: 307 GASSLLADIERQLEHHVSGAYSALNRHPIG 336 >gb|AEG08168.1| deoxyribose-phosphate aldolase [Sinorhizobium meliloti BL225C] Length = 334 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 252/323 (78%), Positives = 279/323 (86%), Gaps = 2/323 (0%) Query: 23 DSAPAGH--PRNGVQPYDAAAFEHLRINLSAAEKRVATLKGRRSVKKDAQAAWLLKAITC 80 D A AGH PRN D + R+NLSAAE+RV TL GRR+VKKDAQAAWLLKA+TC Sbjct: 12 DPAGAGHNWPRNDGVELDLSWVLDQRVNLSAAERRVQTLPGRRTVKKDAQAAWLLKAVTC 71 Query: 81 IDLTTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFVKTAVEAL 140 IDLTTL+GDDT +RV+RLCAKA PVR D+L+ALGM RG+TTGA+CVYHRFV TAVEAL Sbjct: 72 IDLTTLNGDDTAERVKRLCAKARQPVRHDILDALGMGDRGITTGAICVYHRFVSTAVEAL 131 Query: 141 EGKNIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNWEALYREM 200 EG IPVAAVSTGFPAGL PH +KL+EI+ASV DGA EIDIVITREHVLTGNW+ALY EM Sbjct: 132 EGSGIPVAAVSTGFPAGLVPHDVKLREIKASVADGAREIDIVITREHVLTGNWQALYDEM 191 Query: 201 RDFRQACGDAHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNATPLVSLV 260 RDFR ACGDAHVKAILATG+LKTLRNVA+AS+VCMMAGADFIKTSTGKE VNAT LV+L Sbjct: 192 RDFRAACGDAHVKAILATGDLKTLRNVARASLVCMMAGADFIKTSTGKEGVNATLLVTLA 251 Query: 261 MLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLFRVGASSLLA 320 MLRMIR Y+E TGI+VGYKPAGG++ AKDVL YQ LMKEELG +WL+PDLFRVGASSLLA Sbjct: 252 MLRMIRAYEERTGIKVGYKPAGGISVAKDVLNYQFLMKEELGREWLEPDLFRVGASSLLA 311 Query: 321 DIERQLEHHVTGRYSAFNRHAIG 343 DIERQLEHHV+G YSA NRH IG Sbjct: 312 DIERQLEHHVSGAYSALNRHPIG 334 >ref|NP_437344.1| deoxyribose-phosphate aldolase [Sinorhizobium meliloti 1021] ref|YP_004557441.1| deoxyribose-phosphate aldolase [Sinorhizobium meliloti AK83] emb|CAC49204.1| putative deoxyribose-phosphate aldolase protein [Sinorhizobium meliloti 1021] gb|AEG56561.1| deoxyribose-phosphate aldolase [Sinorhizobium meliloti AK83] gb|AEH83622.1| putative deoxyribose-phosphate aldolase protein [Sinorhizobium meliloti SM11] Length = 334 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 251/321 (78%), Positives = 278/321 (86%), Gaps = 2/321 (0%) Query: 25 APAGH--PRNGVQPYDAAAFEHLRINLSAAEKRVATLKGRRSVKKDAQAAWLLKAITCID 82 A AGH PRN D + R+NLSAAE+RV TL GRR+VKKDAQAAWLLKA+TCID Sbjct: 14 AGAGHNWPRNDGVELDLSWVLDQRVNLSAAERRVQTLPGRRTVKKDAQAAWLLKAVTCID 73 Query: 83 LTTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQARGLTTGAVCVYHRFVKTAVEALEG 142 LTTL+GDDT +RV+RLCAKA PVR D+L+ALGM RG+TTGA+CVYHRFV TAVEALEG Sbjct: 74 LTTLNGDDTAERVKRLCAKARQPVRQDILDALGMGDRGITTGAICVYHRFVSTAVEALEG 133 Query: 143 KNIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNWEALYREMRD 202 IPVAAVSTGFPAGL PH +KL+EI+ASV DGA EIDIVITREHVLTGNW+ALY EMRD Sbjct: 134 SGIPVAAVSTGFPAGLVPHDVKLREIKASVADGAREIDIVITREHVLTGNWQALYDEMRD 193 Query: 203 FRQACGDAHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNATPLVSLVML 262 FR ACGDAHVKAILATG+LKTLRNVA+AS+VCMMAGADFIKTSTGKE VNAT LV+L ML Sbjct: 194 FRAACGDAHVKAILATGDLKTLRNVARASLVCMMAGADFIKTSTGKEGVNATLLVTLAML 253 Query: 263 RMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGDDWLQPDLFRVGASSLLADI 322 RMIR Y+E TGI+VGYKPAGG++ AKDVL YQ LMKEELG +WL+PDLFRVGASSLLADI Sbjct: 254 RMIRAYEERTGIKVGYKPAGGISVAKDVLNYQFLMKEELGREWLEPDLFRVGASSLLADI 313 Query: 323 ERQLEHHVTGRYSAFNRHAIG 343 ERQLEHHV+G YSA NRH IG Sbjct: 314 ERQLEHHVSGAYSALNRHPIG 334