BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0819.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774446.1| RbsD or FucU transport protein [Herbaspirill...   289   8e-77
ref|YP_004153412.1| rbsd or fucu transport [Variovorax paradoxus...   262   1e-68
ref|YP_004752844.1| sugar binding or transport, RbsD/FucU [Colli...   246   8e-64
ref|YP_003910501.1| RbsD or FucU transport [Burkholderia sp. CCG...   216   1e-54
ref|YP_556483.1| sugar binding or transport, RbsD/FucU [Burkhold...   215   2e-54

>ref|YP_003774446.1| RbsD or FucU transport protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62538.1| RbsD or FucU transport protein [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  289 bits (740), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 149/150 (99%), Positives = 149/150 (99%)

Query: 1   MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60
           MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR
Sbjct: 1   MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60

Query: 61  AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRERPLGSIERFAFYEA 120
           AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGR RPLGSIERFAFYEA
Sbjct: 61  AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120

Query: 121 AKKAYCVIATGERRFYGCFLLKKGVLPPEA 150
           AKKAYCVIATGERRFYGCFLLKKGVLPPEA
Sbjct: 121 AKKAYCVIATGERRFYGCFLLKKGVLPPEA 150


>ref|YP_004153412.1| rbsd or fucu transport [Variovorax paradoxus EPS]
 gb|ADU35301.1| RbsD or FucU transport [Variovorax paradoxus EPS]
          Length = 150

 Score =  262 bits (669), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 129/150 (86%), Positives = 141/150 (94%)

Query: 1   MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60
           MLK++HPLLNADVLYALRAMGHGDELVLCDANFPADSVARQT LG++LRIDGVGTTEAAR
Sbjct: 1   MLKSIHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTTLGRLLRIDGVGTTEAAR 60

Query: 61  AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRERPLGSIERFAFYEA 120
           AILSVLPLDNAV+ P RRMEIMGEP  IPPVQQE+Q+E++ AEGR RPLGSIERFAFYEA
Sbjct: 61  AILSVLPLDNAVDDPARRMEIMGEPNEIPPVQQEMQREIDAAEGRARPLGSIERFAFYEA 120

Query: 121 AKKAYCVIATGERRFYGCFLLKKGVLPPEA 150
           A++AYCVIATGERRFYGCF+ KKGVL PEA
Sbjct: 121 ARRAYCVIATGERRFYGCFIFKKGVLAPEA 150


>ref|YP_004752844.1| sugar binding or transport, RbsD/FucU [Collimonas fungivorans
           Ter331]
 gb|AEK62021.1| sugar binding or transport, RbsD/FucU [Collimonas fungivorans
           Ter331]
          Length = 150

 Score =  246 bits (628), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 121/150 (80%), Positives = 135/150 (90%)

Query: 1   MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60
           MLK + PLLNADVLYALRAMGHGDELVLCDANFPADSVARQT LG++LRIDGVGT +AAR
Sbjct: 1   MLKLIDPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTTLGRLLRIDGVGTAQAAR 60

Query: 61  AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRERPLGSIERFAFYEA 120
           AILSVLPLDNAV+ P RRME+ GEP  +PPVQQE+Q E++QAEGR R +GS+ERFAFYE 
Sbjct: 61  AILSVLPLDNAVDAPARRMEVAGEPGNVPPVQQEVQLEIDQAEGRVRVMGSVERFAFYET 120

Query: 121 AKKAYCVIATGERRFYGCFLLKKGVLPPEA 150
           A+KAYCVIATGERRFYGCFL KKGV+ PEA
Sbjct: 121 ARKAYCVIATGERRFYGCFLFKKGVIAPEA 150


>ref|YP_003910501.1| RbsD or FucU transport [Burkholderia sp. CCGE1003]
 gb|ADN61210.1| RbsD or FucU transport [Burkholderia sp. CCGE1003]
          Length = 154

 Score =  216 bits (549), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 107/151 (70%), Positives = 123/151 (81%), Gaps = 1/151 (0%)

Query: 1   MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60
           MLKNL PLLNAD+L+ALR+MGHGDELV+CDANFPADSVA  TVLGK+LR+DG     A R
Sbjct: 1   MLKNLDPLLNADILHALRSMGHGDELVICDANFPADSVAHSTVLGKLLRMDGASAPRAVR 60

Query: 61  AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRERPLGSIERFAFYEA 120
           A+LSV+PLD  +EQP  RME++GEP T+P VQ+E Q EVN AEGRE P  SIERFAFYE 
Sbjct: 61  AVLSVMPLDTFIEQPASRMEVVGEPHTLPAVQREAQNEVNSAEGREVPFASIERFAFYER 120

Query: 121 AKKAYCVIATGERRFYGCFLLKKGV-LPPEA 150
           A+KAYCVIATGE R YGCF+  KGV L P+A
Sbjct: 121 ARKAYCVIATGEERGYGCFVFTKGVLLAPDA 151


>ref|YP_556483.1| sugar binding or transport, RbsD/FucU [Burkholderia xenovorans
           LB400]
 gb|ABE37133.1| sugar binding or transport, RbsD/FucU [Burkholderia xenovorans
           LB400]
          Length = 162

 Score =  215 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 109/146 (74%), Positives = 122/146 (83%)

Query: 1   MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60
           MLKNL PLLNADVLYALRAMGHGDELVLCDANFPADSVAR TV GK+LR+DGV    A R
Sbjct: 1   MLKNLDPLLNADVLYALRAMGHGDELVLCDANFPADSVARATVTGKLLRLDGVDAARAIR 60

Query: 61  AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRERPLGSIERFAFYEA 120
           A+LSVLPLD  V+ P  RME++GEP T+P VQ+E Q EVN AEGR+ P  SIERFAFYE 
Sbjct: 61  AVLSVLPLDTFVDAPALRMEVVGEPHTLPAVQREAQAEVNAAEGRDVPFASIERFAFYER 120

Query: 121 AKKAYCVIATGERRFYGCFLLKKGVL 146
           A++AYCVIATGE+R YGCF+ KKGVL
Sbjct: 121 ARRAYCVIATGEQRGYGCFVFKKGVL 146