BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0818.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774445.1| ribokinase [Herbaspirillum seropedicae SmR1]... 480 e-133 ref|YP_004752843.1| ribokinase [Collimonas fungivorans Ter331] >... 312 5e-83 ref|YP_002976098.1| ribokinase [Rhizobium leguminosarum bv. trif... 309 4e-82 ref|YP_004153411.1| ribokinase [Variovorax paradoxus EPS] >gi|31... 306 2e-81 ref|YP_768331.1| ribokinase [Rhizobium leguminosarum bv. viciae ... 306 3e-81 >ref|YP_003774445.1| ribokinase [Herbaspirillum seropedicae SmR1] gb|ADJ62537.1| ribokinase protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 295/319 (92%), Positives = 303/319 (94%) Query: 1 MTSLSHKTGVAVLGIYVADLAFRAPGMPGLGQTIAGTGFAMGPGGKGSNQAVAAARVGAP 60 MTS HK GVAVLGIYVADLAFRAP MPGLGQTIAGTGFAMGPGGKGSNQAVAAARVGAP Sbjct: 1 MTSFPHKQGVAVLGIYVADLAFRAPNMPGLGQTIAGTGFAMGPGGKGSNQAVAAARVGAP 60 Query: 61 VRFISAIGKDSFGDFALSLWRQETIAPHVRVIEDAPTGAAFIYVNDASGDNAIIVVPGAA 120 VRFISAIGKD+FGDFALSLWR+ETIAPHVRVI+ APTGAAFIYVNDASGDNAIIVVPGAA Sbjct: 61 VRFISAIGKDAFGDFALSLWRRETIAPHVRVIDGAPTGAAFIYVNDASGDNAIIVVPGAA 120 Query: 121 SQLSTQDVEREHQAIEAASVFVTQLEQPPEAALTGLQIARAAGTTTVFNPAPALDFPPQI 180 SQLS QDVERE QAIEAA VFVTQLEQPPEAAL GLQIARAAGTTTVFNPAPAL FP Q+ Sbjct: 121 SQLSEQDVERERQAIEAAKVFVTQLEQPPEAALAGLQIARAAGTTTVFNPAPALAFPAQV 180 Query: 181 YGLCDFITPNEHEAALLTGIEIHTVDDARRAADVLLERGVGCALITLGAQGALLHSRSQS 240 YGLCDFITPNEHEAALLTGIEIH +DDARRAADVLLERGVGCALITLGAQG+LLHSRSQS Sbjct: 181 YGLCDFITPNEHEAALLTGIEIHHIDDARRAADVLLERGVGCALITLGAQGSLLHSRSQS 240 Query: 241 LHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMSAEQAARLATAVAAISVTRPGTAPSMP 300 LHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMSAE+AARLATAVAAISVTRPGTAPSMP Sbjct: 241 LHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMSAEEAARLATAVAAISVTRPGTAPSMP 300 Query: 301 SRQEALALLQANAGALAQA 319 SRQEALALL +A LAQA Sbjct: 301 SRQEALALLDTHASVLAQA 319 >ref|YP_004752843.1| ribokinase [Collimonas fungivorans Ter331] gb|AEK62020.1| Ribokinase [Collimonas fungivorans Ter331] Length = 313 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 213/313 (68%), Positives = 243/313 (77%) Query: 1 MTSLSHKTGVAVLGIYVADLAFRAPGMPGLGQTIAGTGFAMGPGGKGSNQAVAAARVGAP 60 MT+ ++GVA+LGIYVADLAFRA MPG+GQTIAG+GFAMGPGGKGSNQAVAAAR GA Sbjct: 1 MTAFVKRSGVAILGIYVADLAFRASHMPGVGQTIAGSGFAMGPGGKGSNQAVAAARAGAR 60 Query: 61 VRFISAIGKDSFGDFALSLWRQETIAPHVRVIEDAPTGAAFIYVNDASGDNAIIVVPGAA 120 V FIS IG+D F D AL+LW E I P V+ + D PTGAAFIY+N ++G+NAIIVVPGAA Sbjct: 61 VSFISTIGRDPFADNALALWAGEGIVPRVQQVADQPTGAAFIYINHSNGENAIIVVPGAA 120 Query: 121 SQLSTQDVEREHQAIEAASVFVTQLEQPPEAALTGLQIARAAGTTTVFNPAPALDFPPQI 180 S + DVE AI A VFVTQLEQP AA GL+IARAAGT TVFNPAPA++F Sbjct: 121 SLICAADVEAAADAIAGACVFVTQLEQPAAAARRGLEIARAAGTITVFNPAPAVEFDSAF 180 Query: 181 YGLCDFITPNEHEAALLTGIEIHTVDDARRAADVLLERGVGCALITLGAQGALLHSRSQS 240 Y LCD+ITPNEHEAALLTG+ + T++ ARRA DV L RGVGCALITLGAQGALLHS S+S Sbjct: 181 YPLCDYITPNEHEAALLTGLPVTTLEQARRAGDVFLARGVGCALITLGAQGALLHSASES 240 Query: 241 LHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMSAEQAARLATAVAAISVTRPGTAPSMP 300 + + G VVETAGAGDAF G FA LAEG S AAR A+AVAAISVTR GTAPSMP Sbjct: 241 VLIAPFSVGPVVETAGAGDAFTGGFATALAEGASPRDAARFASAVAAISVTRAGTAPSMP 300 Query: 301 SRQEALALLQANA 313 +R E ALL++ A Sbjct: 301 ARAEIDALLRSAA 313 >ref|YP_002976098.1| ribokinase [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS56559.1| ribokinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 310 Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 182/309 (58%), Positives = 222/309 (71%) Query: 7 KTGVAVLGIYVADLAFRAPGMPGLGQTIAGTGFAMGPGGKGSNQAVAAARVGAPVRFISA 66 K GV++LGI+VAD A+ A MP +G+TI GTGFA+GPGGKGSNQAVAAAR G V FIS Sbjct: 2 KVGVSILGIFVADTAYLAKRMPNIGETITGTGFAVGPGGKGSNQAVAAARAGGTVSFISK 61 Query: 67 IGKDSFGDFALSLWRQETIAPHVRVIEDAPTGAAFIYVNDASGDNAIIVVPGAASQLSTQ 126 IG+D+FGD AL + + + P V ++D PTGAAFIYVND++GDNAIIV PGAA + Sbjct: 62 IGRDTFGDMALKTYAEAGVTPKVVQMDDMPTGAAFIYVNDSNGDNAIIVYPGAAGTIGVG 121 Query: 127 DVEREHQAIEAASVFVTQLEQPPEAALTGLQIARAAGTTTVFNPAPALDFPPQIYGLCDF 186 DVE + IE ++VFVTQLEQP EAA L+IA AAG TTVFNPAPA FP IY LCD+ Sbjct: 122 DVEAARETIEQSAVFVTQLEQPAEAAQRALEIAHAAGVTTVFNPAPAEPFPDTIYPLCDY 181 Query: 187 ITPNEHEAALLTGIEIHTVDDARRAADVLLERGVGCALITLGAQGALLHSRSQSLHLPAL 246 I PNE EAA + G + T+DDARRA D L +GV ALITLG +G L H+ QS+H+PA+ Sbjct: 182 IVPNETEAAAIVGFPLDTLDDARRAGDAFLVKGVKAALITLGGRGVLYHTAGQSVHVPAI 241 Query: 247 CAGTVVETAGAGDAFNGAFAAGLAEGMSAEQAARLATAVAAISVTRPGTAPSMPSRQEAL 306 AG V++T GAGDAF G F+A L+ G S +A R A A I+VTR GTAP+MP+ +E Sbjct: 242 SAGAVIDTTGAGDAFVGGFSAALSRGFSPVEAVRFGCATAGIAVTRRGTAPAMPTIEEIE 301 Query: 307 ALLQANAGA 315 ALLQ A Sbjct: 302 ALLQKGGAA 310 >ref|YP_004153411.1| ribokinase [Variovorax paradoxus EPS] gb|ADU35300.1| ribokinase [Variovorax paradoxus EPS] Length = 316 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 202/306 (66%), Positives = 234/306 (76%) Query: 5 SHKTGVAVLGIYVADLAFRAPGMPGLGQTIAGTGFAMGPGGKGSNQAVAAARVGAPVRFI 64 S + GVAVLGI+VADLAFRA +PG+GQTIAG+GFAMGPGGKGSNQAVAAAR GA V FI Sbjct: 8 SQQRGVAVLGIFVADLAFRAAQLPGVGQTIAGSGFAMGPGGKGSNQAVAAARAGAGVTFI 67 Query: 65 SAIGKDSFGDFALSLWRQETIAPHVRVIEDAPTGAAFIYVNDASGDNAIIVVPGAASQLS 124 S +G+D+F AL+LW +E I P + D PTGAAFIYV++ +G NAIIVVPGAA+ + Sbjct: 68 SKLGQDAFAANALALWAEEGITPRTPQVADQPTGAAFIYVHEVTGANAIIVVPGAAALID 127 Query: 125 TQDVEREHQAIEAASVFVTQLEQPPEAALTGLQIARAAGTTTVFNPAPALDFPPQIYGLC 184 DV+ AI A VFVTQLEQP AA GL++ARAAGT TVFNPAPAL F +Y LC Sbjct: 128 AADVDAAADAIRGARVFVTQLEQPAGAAQRGLELARAAGTVTVFNPAPALPFDDALYALC 187 Query: 185 DFITPNEHEAALLTGIEIHTVDDARRAADVLLERGVGCALITLGAQGALLHSRSQSLHLP 244 D+ITPNEHEAA L+G+ + T+DDARRA D L +GVGCALITLG +GALLHS S S+H+P Sbjct: 188 DYITPNEHEAAALSGMTVETIDDARRAGDFFLAKGVGCALITLGDKGALLHSASGSVHIP 247 Query: 245 ALCAGTVVETAGAGDAFNGAFAAGLAEGMSAEQAARLATAVAAISVTRPGTAPSMPSRQE 304 AG V ET GAGDAFNG FAA LAEG S +AAR +AVAAISVTR GTAPSMP R E Sbjct: 248 VFNAGAVKETTGAGDAFNGGFAAALAEGASPLEAARFGSAVAAISVTRAGTAPSMPRRAE 307 Query: 305 ALALLQ 310 AL+ Sbjct: 308 VDALMH 313 >ref|YP_768331.1| ribokinase [Rhizobium leguminosarum bv. viciae 3841] emb|CAK08236.1| putative ribokinase [Rhizobium leguminosarum bv. viciae 3841] Length = 310 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 182/309 (58%), Positives = 221/309 (71%) Query: 7 KTGVAVLGIYVADLAFRAPGMPGLGQTIAGTGFAMGPGGKGSNQAVAAARVGAPVRFISA 66 K GV++LGI+VAD A+ A MP +G+TI GTGFA+GPGGKGSNQAVAAAR G V FIS Sbjct: 2 KVGVSILGIFVADTAYLAKRMPNVGETITGTGFAVGPGGKGSNQAVAAARAGGTVSFISK 61 Query: 67 IGKDSFGDFALSLWRQETIAPHVRVIEDAPTGAAFIYVNDASGDNAIIVVPGAASQLSTQ 126 IG+D+FGD AL + + + P V ++D PTGAAFIYVND +GDNAIIV PGAA + Sbjct: 62 IGRDTFGDMALKTYAEAGVTPKVVQMDDMPTGAAFIYVNDGNGDNAIIVYPGAAGTIGIG 121 Query: 127 DVEREHQAIEAASVFVTQLEQPPEAALTGLQIARAAGTTTVFNPAPALDFPPQIYGLCDF 186 DVE + IE ++VFVTQLEQP EAA L+IA AAG TTVFNPAPA FP IY LCD+ Sbjct: 122 DVEAARETIEQSAVFVTQLEQPAEAAQRALEIAHAAGVTTVFNPAPAEPFPDTIYPLCDY 181 Query: 187 ITPNEHEAALLTGIEIHTVDDARRAADVLLERGVGCALITLGAQGALLHSRSQSLHLPAL 246 I PNE EAA + G + T+DDARRA D LL +GV ALITLG +G L H+ QS+H+PA+ Sbjct: 182 IVPNETEAAAIVGFPLDTLDDARRAGDALLAKGVKAALITLGGRGVLYHTARQSVHVPAV 241 Query: 247 CAGTVVETAGAGDAFNGAFAAGLAEGMSAEQAARLATAVAAISVTRPGTAPSMPSRQEAL 306 +G V++T GAGDAF G F+A L+ G S +A R A A I+VTR GTAP+MP +E Sbjct: 242 SSGAVIDTTGAGDAFVGGFSAALSRGASPVEAVRFGCATAGIAVTRRGTAPAMPKIEEIE 301 Query: 307 ALLQANAGA 315 ALLQ A Sbjct: 302 ALLQKGGAA 310