BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0817.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774444.1| sugar ABC transporter permease [Herbaspirill... 545 e-153 ref|YP_004752842.1| ribose ABC transport system, permease [Colli... 442 e-122 ref|YP_004153410.1| inner-membrane translocator [Variovorax para... 385 e-105 ref|YP_426423.1| inner-membrane translocator [Rhodospirillum rub... 346 2e-93 ref|YP_001312567.1| monosaccharide-transporting ATPase [Sinorhiz... 318 1e-84 >ref|YP_003774444.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62536.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 324/335 (96%), Positives = 330/335 (98%) Query: 1 MKLKISDPQLLFLLVINLAILLVATVFSRGDFLDLYNFQSMASQLPELGLLAIGVALAMI 60 MKLKISDPQLLFLLVIN+AILLVATVFS GDFLD+YNFQSMASQLPELGLLAIGVALAMI Sbjct: 3 MKLKISDPQLLFLLVINVAILLVATVFSHGDFLDIYNFQSMASQLPELGLLAIGVALAMI 62 Query: 61 SGNGGIDLSGIGLANLAGVVAAATMPLLVAAPDAAPWTYTLSFIAVALVTGLVGGALNGW 120 SGNGGIDLSGIGLANLAGVVAAA MPLLVAAPDAAPWTYTL FIAVALVTGL+GGALNGW Sbjct: 63 SGNGGIDLSGIGLANLAGVVAAAAMPLLVAAPDAAPWTYTLGFIAVALVTGLLGGALNGW 122 Query: 121 LISRGNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFV 180 LISRGNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFV Sbjct: 123 LISRGNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFV 182 Query: 181 ALLLGVGWLMRYSLFGIKLYLLGTNARAARYAGISQNRLRFATYTLSGVLASVAGVIIAA 240 ALLL VGWLMRYSLFGIKLYLLGTNARAARYAGISQNRLRFATY +SGVLASVAG+IIAA Sbjct: 183 ALLLLVGWLMRYSLFGIKLYLLGTNARAARYAGISQNRLRFATYVISGVLASVAGIIIAA 242 Query: 241 RTASVKADYGNSYLLIAILIAVMAGIRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNF 300 RTASVKADYGNSYLLIAILIAVMAG+RPQGGYGRMVCLFFSALALQLLSSTFNLLEISNF Sbjct: 243 RTASVKADYGNSYLLIAILIAVMAGVRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNF 302 Query: 301 FRDCAWGLLLLCFLASARVSWRDFFPNSKAQLRKS 335 FRDCAWGLLLLCFLASARVSWRDFFPNSKAQLRKS Sbjct: 303 FRDCAWGLLLLCFLASARVSWRDFFPNSKAQLRKS 337 >ref|YP_004752842.1| ribose ABC transport system, permease [Collimonas fungivorans Ter331] gb|AEK62019.1| Ribose ABC transport system, permease protein [Collimonas fungivorans Ter331] Length = 345 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 258/328 (78%), Positives = 289/328 (88%), Gaps = 1/328 (0%) Query: 1 MKLKISDPQLLFLLVINLAILLVATVFSRGDFLDLYNFQSMASQLPELGLLAIGVALAMI 60 MK K +DPQL FL+ IN ILL ATV S G F+D+YNFQSMASQLPELGLLAIGVALAMI Sbjct: 1 MKFKFADPQLNFLVGINALILLTATVLSHGGFIDIYNFQSMASQLPELGLLAIGVALAMI 60 Query: 61 SGNGGIDLSGIGLANLAGVVAAATMPLLVAAPDAAPWTYTLSFIAVALVTGLVGGALNGW 120 SGNGGIDLSG+GLANLAGVVAA+ +P LV A D +PW YT SF+ VAL GL GG LNGW Sbjct: 61 SGNGGIDLSGVGLANLAGVVAASVVPQLVVA-DTSPWLYTGSFVLVALGVGLAGGFLNGW 119 Query: 121 LISRGNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFV 180 LI+R LTPILCTLG+Q+IFTGLAVVLTNGSSLRIS VDP+SAIGNE + GVPIPF+IF+ Sbjct: 120 LIARVGLTPILCTLGSQLIFTGLAVVLTNGSSLRISSVDPMSAIGNEMLFGVPIPFVIFM 179 Query: 181 ALLLGVGWLMRYSLFGIKLYLLGTNARAARYAGISQNRLRFATYTLSGVLASVAGVIIAA 240 LL+G+GWL+RYS FGI+L+LLGTNA+AARYAGI R+ ATYTL G+LA VAGVIIAA Sbjct: 180 LLLVGIGWLLRYSPFGIRLFLLGTNAKAARYAGIPGERMLIATYTLCGLLAGVAGVIIAA 239 Query: 241 RTASVKADYGNSYLLIAILIAVMAGIRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNF 300 RTASVKADYG+SYLLIAILIAVMAG+RPQGGYGRMVCLFFSA+ALQLLSSTFNLL+ISNF Sbjct: 240 RTASVKADYGSSYLLIAILIAVMAGVRPQGGYGRMVCLFFSAMALQLLSSTFNLLDISNF 299 Query: 301 FRDCAWGLLLLCFLASARVSWRDFFPNS 328 FRDCAWGLLLLCFLASAR++ +DF P S Sbjct: 300 FRDCAWGLLLLCFLASARINLKDFHPFS 327 >ref|YP_004153410.1| inner-membrane translocator [Variovorax paradoxus EPS] gb|ADU35299.1| inner-membrane translocator [Variovorax paradoxus EPS] Length = 350 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 246/324 (75%), Positives = 279/324 (86%), Gaps = 1/324 (0%) Query: 1 MKLKISDPQLLFLLVINLAILLVATVFSRGDFLDLYNFQSMASQLPELGLLAIGVALAMI 60 M + SD +L FL+ IN+ IL+VATV S+GDFLD+YNFQSM QLPELGLLA+GVAL+MI Sbjct: 1 MTSRFSDRELNFLVAINVVILVVATVLSKGDFLDVYNFQSMGGQLPELGLLAMGVALSMI 60 Query: 61 SGNGGIDLSGIGLANLAGVVAAATMPLLVAAPDAAPWTYTLSFIAVALVTGLVGGALNGW 120 SGNGGIDLSG+ LANLAGVVAA P+L AAPDA+PW YT F +AL GLVGG LNG Sbjct: 61 SGNGGIDLSGVALANLAGVVAATVAPML-AAPDASPWIYTAWFAVIALAVGLVGGLLNGL 119 Query: 121 LISRGNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFV 180 LI+R LTPILCTLGTQ+++TG AVVLT GSSLR+ +P+SAIGNE VLGVPIPF+IFV Sbjct: 120 LIARAGLTPILCTLGTQLLYTGFAVVLTGGSSLRVGDAEPLSAIGNEMVLGVPIPFVIFV 179 Query: 181 ALLLGVGWLMRYSLFGIKLYLLGTNARAARYAGISQNRLRFATYTLSGVLASVAGVIIAA 240 A+LLGVGWL++ S FGI+L+LLGTNA+AARYAGISQNR+ ATY L GVLA+VAGVIIAA Sbjct: 180 AMLLGVGWLLKQSPFGIRLFLLGTNAKAARYAGISQNRMLVATYALCGVLAAVAGVIIAA 239 Query: 241 RTASVKADYGNSYLLIAILIAVMAGIRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNF 300 RTASVK+DYGNSYLLIAILI VMAG+RPQGGYGRM CLFFSA+ALQLLSSTFNLL ISNF Sbjct: 240 RTASVKSDYGNSYLLIAILITVMAGVRPQGGYGRMTCLFFSAVALQLLSSTFNLLGISNF 299 Query: 301 FRDCAWGLLLLCFLASARVSWRDF 324 FRDCAWGLLLL FLASAR+S D Sbjct: 300 FRDCAWGLLLLFFLASARLSLADL 323 >ref|YP_426423.1| inner-membrane translocator [Rhodospirillum rubrum ATCC 11170] gb|ABC22136.1| inner-membrane translocator [Rhodospirillum rubrum ATCC 11170] gb|AEO47851.1| inner-membrane translocator [Rhodospirillum rubrum F11] Length = 353 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 198/322 (61%), Positives = 254/322 (78%), Gaps = 1/322 (0%) Query: 5 ISDPQLLFLLVINLAILLVATVFSRGDFLDLYNFQSMASQLPELGLLAIGVALAMISGNG 64 +SD QL FL+++NL++L+ A + F++ YN QSMA+Q+PELGLLAIGV LAM+SGNG Sbjct: 1 MSDRQLNFLILVNLSVLVAAVALAGPTFVNTYNLQSMAAQVPELGLLAIGVMLAMVSGNG 60 Query: 65 GIDLSGIGLANLAGVVAAATMPLLVAAPDAAPWTYTLSFIAVALVTGLVGGALNGWLISR 124 GIDLSGI LANL+G+VAA +P V+ PDAAP +TLSF AVAL GL+GG +NG LISR Sbjct: 61 GIDLSGIALANLSGIVAAIVVPHWVS-PDAAPMAFTLSFAAVALAVGLIGGLINGLLISR 119 Query: 125 GNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFVALLL 184 LTPI+ TLGTQ+ FTG+A+VLTNGS+L + ++P+ GN V GVPI F +F+ + Sbjct: 120 AELTPIIATLGTQLAFTGVAIVLTNGSALGLGYIEPLDDFGNAPVFGVPICFALFIVIAA 179 Query: 185 GVGWLMRYSLFGIKLYLLGTNARAARYAGISQNRLRFATYTLSGVLASVAGVIIAARTAS 244 +G ++R++ FG++L+LLG+NA+AARYAGI+ R+ TYTL GVLASVAG+II ART+S Sbjct: 180 VIGVVLRFTPFGMRLFLLGSNAKAARYAGINLRRMILVTYTLCGVLASVAGIIIGARTSS 239 Query: 245 VKADYGNSYLLIAILIAVMAGIRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNFFRDC 304 +K DYG+SY++IAILIAVMAG+RP GGYGR++C+ SA ALQ LSS FN L ISNFFRDC Sbjct: 240 MKWDYGSSYVMIAILIAVMAGVRPDGGYGRVICVVLSATALQALSSMFNFLNISNFFRDC 299 Query: 305 AWGLLLLCFLASARVSWRDFFP 326 AWGLLLL FLA +RV R + P Sbjct: 300 AWGLLLLIFLAVSRVDLRSWLP 321 >ref|YP_001312567.1| monosaccharide-transporting ATPase [Sinorhizobium medicae WSM419] gb|ABR62634.1| Monosaccharide-transporting ATPase [Sinorhizobium medicae WSM419] Length = 328 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 192/324 (59%), Positives = 244/324 (75%), Gaps = 1/324 (0%) Query: 1 MKLKISDPQLLFLLVINLAILLVATVFSRGDFLDLYNFQSMASQLPELGLLAIGVALAMI 60 MK +D Q FL+ N+ ++ +A VF+ FL LYNFQSM++Q+PEL LLA+GV LAMI Sbjct: 1 MKSVFADRQFNFLVATNVLVVALAVVFAGDTFLSLYNFQSMSAQVPELALLALGVMLAMI 60 Query: 61 SGNGGIDLSGIGLANLAGVVAAATMPLLVAAPDAAPWTYTLSFIAVALVTGLVGGALNGW 120 +GNGGIDLSGI LANLAGV + M V+ D P ++ F +AL+ GL GG LNG Sbjct: 61 AGNGGIDLSGIALANLAGVGSYLLMRDWVSV-DEVPLAFSWLFALIALLIGLAGGMLNGA 119 Query: 121 LISRGNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFV 180 LI+ LTPI+ TLGTQ+ FTGLAV TNGS++ + ++P+ GN VLG+P+ F +FV Sbjct: 120 LIAFAGLTPIIATLGTQLFFTGLAVAFTNGSAITLGYIEPLDNFGNTPVLGLPMCFTLFV 179 Query: 181 ALLLGVGWLMRYSLFGIKLYLLGTNARAARYAGISQNRLRFATYTLSGVLASVAGVIIAA 240 A+ + +G ++RY+ FG KLYL+G+NA+AARYAGI Q R+ TYT+ GVLASVAG+IIAA Sbjct: 180 AIAVLIGVVLRYTPFGFKLYLMGSNAKAARYAGIPQRRILLLTYTVCGVLASVAGIIIAA 239 Query: 241 RTASVKADYGNSYLLIAILIAVMAGIRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNF 300 RT+SVK DYG+SY+LIAILI VMAG+RP GGYGR VC+ SA ALQ+LSS FN L+ISNF Sbjct: 240 RTSSVKWDYGSSYVLIAILIVVMAGVRPDGGYGRTVCVVLSATALQMLSSLFNFLDISNF 299 Query: 301 FRDCAWGLLLLCFLASARVSWRDF 324 FRDCAWGLLL+ FLA++RV R F Sbjct: 300 FRDCAWGLLLIVFLATSRVDLRAF 323