BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0816.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774443.1| sugar ABC transporter periplasmic protein [H... 607 e-172 ref|YP_004752841.1| ABC sugar transporter, periplasmic ligand bi... 559 e-157 ref|YP_004153409.1| periplasmic binding protein/laci transcripti... 537 e-151 ref|YP_553911.1| sugar ABC transporter periplasmic ligand bindin... 450 e-124 ref|YP_004228076.1| periplasmic-binding protein/LacI transcripti... 449 e-124 >ref|YP_003774443.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62535.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 329/335 (98%), Positives = 333/335 (99%) Query: 1 MMNKKSACVLGSALAAIGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPG 60 MMNKKSACVL SALAA+GFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPG Sbjct: 1 MMNKKSACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPG 60 Query: 61 VTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEA 120 VTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEA Sbjct: 61 VTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEA 120 Query: 121 DNQKNTLVDIEAFDNTAYGARLNDRLAACMGETGKWSSLVGSLGSQSQVQWADGGASNAA 180 DNQKNTLVDIEAFDNTAYGARLNDRLAACMG+ GKWSSLVGSLGSQSQVQWADGGA+NAA Sbjct: 121 DNQKNTLVDIEAFDNTAYGARLNDRLAACMGQAGKWSSLVGSLGSQSQVQWADGGAANAA 180 Query: 181 KKYPKMTLVDAKNESANDAEKAYAKAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQ 240 KKYPKMTLVDAKNESANDAEKAYAKAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQ Sbjct: 181 KKYPKMTLVDAKNESANDAEKAYAKAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQ 240 Query: 241 GKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGLAMNKAAMMLVQGKKITDGMDLGIP 300 GKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGLAMNKAAMMLVQGKKITDGMDLGIP Sbjct: 241 GKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGLAMNKAAMMLVQGKKITDGMDLGIP 300 Query: 301 GYNKVSVKKGPGVGVIVTGQAWVEVDKKNYKQYAF 335 GYNKV+VKKGPGVGVIVTGQAWVEVDKKNYKQYAF Sbjct: 301 GYNKVTVKKGPGVGVIVTGQAWVEVDKKNYKQYAF 335 >ref|YP_004752841.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] gb|AEK62018.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] Length = 336 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 301/337 (89%), Positives = 320/337 (94%), Gaps = 4/337 (1%) Query: 2 MNKKSAC---VLGSALAAIGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAAN 58 M KK+ C VLG ALA++ + A+QA+NKPID+VTVVKITGISWFNRMEVGVKEF A N Sbjct: 1 MLKKTTCAALVLG-ALASLAYTGAIQAENKPIDVVTVVKITGISWFNRMEVGVKEFGAGN 59 Query: 59 PGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTH 118 PGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRA++RGIKVVTH Sbjct: 60 PGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRAMERGIKVVTH 119 Query: 119 EADNQKNTLVDIEAFDNTAYGARLNDRLAACMGETGKWSSLVGSLGSQSQVQWADGGASN 178 EADNQKNT+VDIEAFDNTAYGARLNDRLAACMG+ GKWSSLVGSLGSQSQVQWADGGASN Sbjct: 120 EADNQKNTMVDIEAFDNTAYGARLNDRLAACMGQKGKWSSLVGSLGSQSQVQWADGGASN 179 Query: 179 AAKKYPKMTLVDAKNESANDAEKAYAKAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAG 238 AAKKYP MTLVDAKNESANDAEKAY+KAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAG Sbjct: 180 AAKKYPGMTLVDAKNESANDAEKAYSKAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAG 239 Query: 239 LQGKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGLAMNKAAMMLVQGKKITDGMDLG 298 LQGK+CVYGTGLPSEAAKFLESGAVGGIAFWDPKDAG+ MNKAA+MLVQGKKITDGMD+G Sbjct: 240 LQGKICVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGIMMNKAAVMLVQGKKITDGMDMG 299 Query: 299 IPGYNKVSVKKGPGVGVIVTGQAWVEVDKKNYKQYAF 335 + GYNKV+VKKGPG GVIVTGQAWVEVDK NYK+YAF Sbjct: 300 VSGYNKVAVKKGPGAGVIVTGQAWVEVDKSNYKKYAF 336 >ref|YP_004153409.1| periplasmic binding protein/laci transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35298.1| periplasmic binding protein/LacI transcriptional regulator [Variovorax paradoxus EPS] Length = 334 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 286/335 (85%), Positives = 306/335 (91%), Gaps = 1/335 (0%) Query: 1 MMNKKSACVLGSALAAIGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPG 60 M+ K AL + FASAL AQ KP DIVTVVKITGISWFNRMEVGVKEF A+ PG Sbjct: 1 MLKKTKIACTVLALGTVAFASALHAQGKPQDIVTVVKITGISWFNRMEVGVKEFGASTPG 60 Query: 61 VTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEA 120 V TRQIGPAQSDAAQQQRL+EDLVAKKVDAIAVVSMDPPTLEPVLKRA++RGIKVVTHEA Sbjct: 61 VATRQIGPAQSDAAQQQRLIEDLVAKKVDAIAVVSMDPPTLEPVLKRAMERGIKVVTHEA 120 Query: 121 DNQKNTLVDIEAFDNTAYGARLNDRLAACMGETGKWSSLVGSLGSQSQVQWADGGASNAA 180 DNQKNT+VDIEAFDNTAYGAR+N+RLAACMG+ GKW+SLVGSLGSQSQVQWADGGA+N A Sbjct: 121 DNQKNTMVDIEAFDNTAYGARINERLAACMGQQGKWTSLVGSLGSQSQVQWADGGANN-A 179 Query: 181 KKYPKMTLVDAKNESANDAEKAYAKAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQ 240 KKYPKM LVDAKNES NDAEKAY KAKE+LRKHPD+KGFQGSSSLDVLGIGRAVEEAGLQ Sbjct: 180 KKYPKMQLVDAKNESLNDAEKAYGKAKEMLRKHPDLKGFQGSSSLDVLGIGRAVEEAGLQ 239 Query: 241 GKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGLAMNKAAMMLVQGKKITDGMDLGIP 300 GKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAG+ MNKAA ML+ GK ITDG D+G+ Sbjct: 240 GKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGIVMNKAAKMLLDGKTITDGTDMGVQ 299 Query: 301 GYNKVSVKKGPGVGVIVTGQAWVEVDKKNYKQYAF 335 GYNKVSVKKGPGVGVIVTGQAWVEVDK+NYK+YAF Sbjct: 300 GYNKVSVKKGPGVGVIVTGQAWVEVDKQNYKKYAF 334 >ref|YP_553911.1| sugar ABC transporter periplasmic ligand binding protein [Burkholderia xenovorans LB400] gb|ABE34561.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Burkholderia xenovorans LB400] Length = 334 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 230/319 (72%), Positives = 266/319 (83%), Gaps = 1/319 (0%) Query: 17 IGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQ 76 IG +A QA IVTVVK+TGI+WFNRM+ GVK+FA NPGVT Q GP ++DAAQQ Sbjct: 17 IGVIAAAQAATNET-IVTVVKVTGINWFNRMDDGVKQFAKDNPGVTAYQTGPGRADAAQQ 75 Query: 77 QRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNT 136 +++EDL+AKKV AIAVV DPPTLEP LK+A+DRGIKVVTHEADN+KNT+VDIEAFDNT Sbjct: 76 LKIIEDLIAKKVTAIAVVPYDPPTLEPALKKAMDRGIKVVTHEADNEKNTMVDIEAFDNT 135 Query: 137 AYGARLNDRLAACMGETGKWSSLVGSLGSQSQVQWADGGASNAAKKYPKMTLVDAKNESA 196 AYGA LN+RLA+CM + GKW+ LVGSLGS+SQVQWADGG NA KYPKM LV+ K E+ Sbjct: 136 AYGAGLNERLASCMHDDGKWAVLVGSLGSRSQVQWADGGIGNAKAKYPKMNLVEPKLETN 195 Query: 197 NDAEKAYAKAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQGKVCVYGTGLPSEAAK 256 ND E+AY AKE+LRKHPD+KGFQGSSSLDV+GIGRAVEEAG+QGK+CVYGTGLP+EA K Sbjct: 196 NDGERAYEVAKEVLRKHPDLKGFQGSSSLDVIGIGRAVEEAGMQGKICVYGTGLPTEAGK 255 Query: 257 FLESGAVGGIAFWDPKDAGLAMNKAAMMLVQGKKITDGMDLGIPGYNKVSVKKGPGVGVI 316 FLESGA+ GIAFWDPK AG+AMNK A ML+ GK + +G DLGIPGY KV+V KGPG G+I Sbjct: 256 FLESGAINGIAFWDPKLAGIAMNKIAQMLIDGKTVENGADLGIPGYTKVTVAKGPGKGII 315 Query: 317 VTGQAWVEVDKKNYKQYAF 335 V GQ WV VDK NYKQY F Sbjct: 316 VRGQGWVNVDKTNYKQYPF 334 >ref|YP_004228076.1| periplasmic-binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX55016.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1001] Length = 334 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 226/304 (74%), Positives = 259/304 (85%) Query: 32 IVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAI 91 IVTVVK+TGI+WFNRM+ GVKEFA NPGV+ Q GP ++DAAQQ +++EDL+AKKV AI Sbjct: 31 IVTVVKVTGINWFNRMDEGVKEFAKDNPGVSAYQTGPGRADAAQQLKIIEDLIAKKVTAI 90 Query: 92 AVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNTAYGARLNDRLAACMG 151 AVV DPPTLEP LK+A+DRGIKVVTHEADN KNT+VDIEAFDNTAYGA LN+RLA+CM Sbjct: 91 AVVPYDPPTLEPALKKAMDRGIKVVTHEADNAKNTMVDIEAFDNTAYGAGLNERLASCMH 150 Query: 152 ETGKWSSLVGSLGSQSQVQWADGGASNAAKKYPKMTLVDAKNESANDAEKAYAKAKEILR 211 + GKW+ LVGSLGS+SQVQWADGG NA KYPKM LV+ K E+ ND E+AY AKE+LR Sbjct: 151 DEGKWAVLVGSLGSRSQVQWADGGIGNAKAKYPKMNLVEPKLETNNDGERAYEVAKEVLR 210 Query: 212 KHPDIKGFQGSSSLDVLGIGRAVEEAGLQGKVCVYGTGLPSEAAKFLESGAVGGIAFWDP 271 KHPD+KGFQGSSSLDV+GIGRAVEEAG+QGK+CVYGTGLP+EA KFLESGA+ GIAFWDP Sbjct: 211 KHPDLKGFQGSSSLDVIGIGRAVEEAGMQGKICVYGTGLPNEAGKFLESGAINGIAFWDP 270 Query: 272 KDAGLAMNKAAMMLVQGKKITDGMDLGIPGYNKVSVKKGPGVGVIVTGQAWVEVDKKNYK 331 K AG+AMNK A MLV GK + +G DLGIPGY KV+V KGPG G+IV GQ WV VDK NYK Sbjct: 271 KLAGIAMNKVAKMLVDGKTVENGADLGIPGYTKVTVAKGPGKGIIVRGQGWVNVDKSNYK 330 Query: 332 QYAF 335 QY F Sbjct: 331 QYPF 334