BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0815.p (520 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774442.1| sugar ABC transporter ATPase [Herbaspirillum... 900 0.0 ref|YP_004153408.1| ABC transporter [Variovorax paradoxus EPS] >... 685 0.0 ref|YP_004752840.1| sugar ABC transporter ATP-binding protein [C... 676 0.0 ref|YP_001888920.1| ABC transporter-like protein [Burkholderia p... 666 0.0 ref|YP_553910.1| sugar ABC transporter ATPase subunit [Burkholde... 665 0.0 >ref|YP_003774442.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ62534.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 900 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 472/519 (90%), Positives = 493/519 (94%) Query: 1 MSTHDTSRPDGAPAQEFLRLQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMI 60 M++ TS APAQEFLRLQGIHKRFAGVHALRG+DLTIHAGEIYHLLGENGCGKST+I Sbjct: 1 MTSQTTSSVSAAPAQEFLRLQGIHKRFAGVHALRGVDLTIHAGEIYHLLGENGCGKSTLI 60 Query: 61 KIIAGAQPPSEGEIFIQGERVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLV 120 KIIAGAQPPSEGEI+IQG+RVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALS QLV Sbjct: 61 KIIAGAQPPSEGEIYIQGQRVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLV 120 Query: 121 RHQGRLARLFDRGSLNDTAARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSA 180 HQGRLARLFDR +LN TAARALRAVNLPA A FLDTRVDELPIATRQLIAIARAIATSA Sbjct: 121 HHQGRLARLFDRHALNQTAARALRAVNLPADADFLDTRVDELPIATRQLIAIARAIATSA 180 Query: 181 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV 240 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV Sbjct: 181 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV 240 Query: 241 AQGPIQEFTKARLGQLMTGKQLSEERYRVDAQLHKTRLEVRALTRAGAFEDVSFALREGE 300 AQGPIQ+FTKA+LGQLMTGKQLS+ERYRVDAQLHK +EVRAL R GAFEDVSFALR+GE Sbjct: 241 AQGPIQQFTKAQLGQLMTGKQLSQERYRVDAQLHKPLMEVRALGRHGAFEDVSFALRQGE 300 Query: 301 ILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDRISE 360 ILGITGLLDSGRNELALALAGVEPA GQI L+GQ LSLR PGDAITHGIGYVPEDRISE Sbjct: 301 ILGITGLLDSGRNELALALAGVEPARAGQITLEGQPLSLRNPGDAITHGIGYVPEDRISE 360 Query: 361 GLFLDKSIRDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIATPDVDRPVQSLSGG 420 GLFLDKSIRDNI+TTILRK+RGKFGALDAAACQRFS DTVRQLQIATPDVDRPVQSLSGG Sbjct: 361 GLFLDKSIRDNIVTTILRKLRGKFGALDAAACQRFSTDTVRQLQIATPDVDRPVQSLSGG 420 Query: 421 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLPELL 480 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLA++G+GVILISDDLPELL Sbjct: 421 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAQRGLGVILISDDLPELL 480 Query: 481 QNCDNLLLMKRGRIVRRFEVEGLSEGDLSHDLVSEQSHE 519 QNCDNLLLMKRGRIVRR+ VEGL+E +L HDLVSEQS E Sbjct: 481 QNCDNLLLMKRGRIVRRYAVEGLAESELFHDLVSEQSQE 519 >ref|YP_004153408.1| ABC transporter [Variovorax paradoxus EPS] gb|ADU35297.1| ABC transporter related protein [Variovorax paradoxus EPS] Length = 528 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 363/503 (72%), Positives = 409/503 (81%) Query: 11 GAPAQEFLRLQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMIKIIAGAQPPS 70 G + FL +Q +HKRFAGVHALRGIDLTI AGEIYHLLGENGCGKST+IKII+GAQPPS Sbjct: 14 GTGRRVFLEVQDVHKRFAGVHALRGIDLTIEAGEIYHLLGENGCGKSTLIKIISGAQPPS 73 Query: 71 EGEIFIQGERVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLVRHQGRLARLF 130 +G I I G L+PL +L+LGIETVYQDLSLLPNMSVAENVALS QLV G+LAR F Sbjct: 74 QGRIVIDGHPHESLSPLEALTLGIETVYQDLSLLPNMSVAENVALSEQLVATGGKLARRF 133 Query: 131 DRGSLNDTAARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTT 190 DR ++ TA RAL V LP AAFL RVDELPIATRQL+AIARA+AT ARMVIMDEPTT Sbjct: 134 DRKAVAATAVRALETVKLPTDAAFLARRVDELPIATRQLVAIARAVATRARMVIMDEPTT 193 Query: 191 SLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTK 250 SLTQKEVD LV V+ LRA GVAVLFVSHKLDEC A+GGQAIVFRDG KVAQGPI++FTK Sbjct: 194 SLTQKEVDNLVHVVEHLRAQGVAVLFVSHKLDECMAMGGQAIVFRDGTKVAQGPIRDFTK 253 Query: 251 ARLGQLMTGKQLSEERYRVDAQLHKTRLEVRALTRAGAFEDVSFALREGEILGITGLLDS 310 A L MTGKQL RYR T L+V AL R F DV+F L +GEILGITGLLDS Sbjct: 254 AELAHWMTGKQLDGARYRHRTHGGDTLLKVEALGRGAQFSDVNFTLHKGEILGITGLLDS 313 Query: 311 GRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDRISEGLFLDKSIRD 370 GRNELALALAGV+ A G+I LDGQ+++L+ P D I GIGYVPEDR+SEGLFLDK IRD Sbjct: 314 GRNELALALAGVQAADRGRISLDGQQVTLKTPSDGIRQGIGYVPEDRLSEGLFLDKPIRD 373 Query: 371 NIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIATPDVDRPVQSLSGGNQQRVLIGRW 430 NI+T +L ++RG+FGALD CQ + TV +LQIATPDVDRPVQSLSGGNQQRVLIGRW Sbjct: 374 NIVTAVLGRLRGRFGALDGKQCQALAERTVSELQIATPDVDRPVQSLSGGNQQRVLIGRW 433 Query: 431 LAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLPELLQNCDNLLLMK 490 LAI+PRVLILHGPTVGVDVGSKD IYRI+Q LA+QG+GVIL+SDDL ELLQNCD +LLM+ Sbjct: 434 LAIDPRVLILHGPTVGVDVGSKDTIYRIVQRLAEQGLGVILVSDDLQELLQNCDRILLMR 493 Query: 491 RGRIVRRFEVEGLSEGDLSHDLV 513 +GRI F+ EGL+E +L H LV Sbjct: 494 KGRIANDFDAEGLAESELYHALV 516 Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 9/234 (3%) Query: 288 AFEDVSFALREGEILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAIT 347 A + + GEI + G G++ L ++G +P G+IV+DG +P +A+T Sbjct: 35 ALRGIDLTIEAGEIYHLLGENGCGKSTLIKIISGAQPPSQGRIVIDGHPHESLSPLEALT 94 Query: 348 HGIGYVPEDRISEGLFLDKSIRDNI-----ITTILRKMRGKFGALDAAACQRFSVDTVRQ 402 GI V +D L + S+ +N+ + K+ +F AA +++TV+ Sbjct: 95 LGIETVYQDL---SLLPNMSVAENVALSEQLVATGGKLARRFDRKAVAATAVRALETVK- 150 Query: 403 LQIATPDVDRPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDL 462 L + R V L +Q V I R +A R++I+ PT + D + +++ L Sbjct: 151 LPTDAAFLARRVDELPIATRQLVAIARAVATRARMVIMDEPTTSLTQKEVDNLVHVVEHL 210 Query: 463 AKQGMGVILISDDLPELLQNCDNLLLMKRGRIVRRFEVEGLSEGDLSHDLVSEQ 516 QG+ V+ +S L E + ++ + G V + + ++ +L+H + +Q Sbjct: 211 RAQGVAVLFVSHKLDECMAMGGQAIVFRDGTKVAQGPIRDFTKAELAHWMTGKQ 264 >ref|YP_004752840.1| sugar ABC transporter ATP-binding protein [Collimonas fungivorans Ter331] gb|AEK62017.1| ABC-type sugar transport system, ATP-binding protein [Collimonas fungivorans Ter331] Length = 564 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 370/510 (72%), Positives = 415/510 (81%), Gaps = 4/510 (0%) Query: 10 DGAPAQE----FLRLQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMIKIIAG 65 DGA + + FL +Q +HKRFAGVHALRGIDLTI AGEIYHLLGENGCGKST+IKII+G Sbjct: 48 DGAASNDRQRVFLEVQDVHKRFAGVHALRGIDLTIEAGEIYHLLGENGCGKSTLIKIISG 107 Query: 66 AQPPSEGEIFIQGERVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLVRHQGR 125 AQ PS+G + I G A L+PL +L+LGIETVYQDLSLLPNMSVAENVALS QLV G+ Sbjct: 108 AQAPSQGRLLINGVSHASLSPLQALTLGIETVYQDLSLLPNMSVAENVALSEQLVNGNGK 167 Query: 126 LARLFDRGSLNDTAARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSARMVIM 185 L R FDR ++ TA RAL VNLP AAFL TR DELPIATRQL+AIARAIAT A+MVIM Sbjct: 168 LVRRFDRRAVEATAMRALATVNLPTDAAFLATRADELPIATRQLLAIARAIATRAQMVIM 227 Query: 186 DEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPI 245 DEPTTSLTQKEVD LV VI GLRA GVAVLFVSHKLDECFAIGGQAIVFRDG KV QGPI Sbjct: 228 DEPTTSLTQKEVDNLVAVIEGLRAQGVAVLFVSHKLDECFAIGGQAIVFRDGAKVVQGPI 287 Query: 246 QEFTKARLGQLMTGKQLSEERYRVDAQLHKTRLEVRALTRAGAFEDVSFALREGEILGIT 305 FTKA+L MTGKQL RYR + + LEV+ L R F DV F L +GEILGIT Sbjct: 288 AGFTKAQLAHWMTGKQLDGARYRNRSYGNGELLEVQGLGRKDYFRDVDFVLHKGEILGIT 347 Query: 306 GLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDRISEGLFLD 365 GLLDSGRNELALALAGV+ A G+I L+G + LR PGDAI H IGYVPEDR+SEGLFLD Sbjct: 348 GLLDSGRNELALALAGVQAADRGRIALEGGEVVLRTPGDAIRHNIGYVPEDRLSEGLFLD 407 Query: 366 KSIRDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIATPDVDRPVQSLSGGNQQRV 425 KSIRDNIITT+L +RG+ GALDA Q+ + DTV LQIATPDVDRPVQSLSGGNQQRV Sbjct: 408 KSIRDNIITTVLNSLRGRCGALDARRSQQLAEDTVASLQIATPDVDRPVQSLSGGNQQRV 467 Query: 426 LIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLPELLQNCDN 485 LIGRWLAI PRVLILHGPTVGVDVGSKDIIY+I+Q LA++G+GVIL+SDDLPELLQNCD Sbjct: 468 LIGRWLAIRPRVLILHGPTVGVDVGSKDIIYKIVQRLAEEGLGVILVSDDLPELLQNCDR 527 Query: 486 LLLMKRGRIVRRFEVEGLSEGDLSHDLVSE 515 +L+M++GRI F+VEGL+E +L LVS+ Sbjct: 528 ILMMRKGRIAHNFDVEGLTESELYRTLVSD 557 >ref|YP_001888920.1| ABC transporter-like protein [Burkholderia phytofirmans PsJN] gb|ACD19550.1| ABC transporter related [Burkholderia phytofirmans PsJN] Length = 523 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 343/516 (66%), Positives = 413/516 (80%), Gaps = 2/516 (0%) Query: 2 STHDTSRPDGAPAQEFLRLQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMIK 61 S +++P+ + Q FL++ G+HKRF GVHALRG+ L+ G+IYHLLGENGCGKST+IK Sbjct: 10 SPRQSAQPEAS--QPFLQVVGVHKRFTGVHALRGVSLSFERGQIYHLLGENGCGKSTLIK 67 Query: 62 IIAGAQPPSEGEIFIQGERVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLVR 121 II+GAQPP EGE+ I+G R A L+ L SL+ GIETVYQDLSLLPNM+VAENVAL+++L Sbjct: 68 IISGAQPPDEGELVIEGVRHARLSALESLAAGIETVYQDLSLLPNMNVAENVALTSELAT 127 Query: 122 HQGRLARLFDRGSLNDTAARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSAR 181 HQG+LAR FDR L TAARAL AV LP A F T +++LP+ATRQL+AIARAIA+ A+ Sbjct: 128 HQGKLARTFDRRELARTAARALEAVGLPGNAEFQATLIEQLPLATRQLVAIARAIASEAK 187 Query: 182 MVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVA 241 VIMDEPTTSLTQKEVD L+ V+ LRA GV VLFVSHKLDEC+AIGG+ IV RDG+K+A Sbjct: 188 FVIMDEPTTSLTQKEVDNLIAVLANLRAQGVTVLFVSHKLDECYAIGGEVIVLRDGQKMA 247 Query: 242 QGPIQEFTKARLGQLMTGKQLSEERYRVDAQLHKTRLEVRALTRAGAFEDVSFALREGEI 301 QGPI +FTKA++ +LMTG+ LS ERYR A LEVR TRAG F DVSF L GEI Sbjct: 248 QGPIAQFTKAQISELMTGRHLSNERYREGAHEPNIVLEVRGYTRAGQFSDVSFGLHGGEI 307 Query: 302 LGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDRISEG 361 LGITGLLDSGRNELA ALAGV PA GQ+ LDG+ +SLR P DA H IGYVPEDR++EG Sbjct: 308 LGITGLLDSGRNELARALAGVAPAQSGQVRLDGKSISLRTPSDAKNHRIGYVPEDRLNEG 367 Query: 362 LFLDKSIRDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIATPDVDRPVQSLSGGN 421 LFLDK IRDN+IT ++ +R +FG +D Q + TV+ LQIATP VD+PVQSLSGGN Sbjct: 368 LFLDKPIRDNVITAMISSLRDRFGQIDRVRAQALAEQTVKDLQIATPGVDKPVQSLSGGN 427 Query: 422 QQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLPELLQ 481 QQRVLIGRWLAI+PRVLILHGPTVGVDVGSKDIIYRI+Q L+++G+G+ILISDDLPELLQ Sbjct: 428 QQRVLIGRWLAIDPRVLILHGPTVGVDVGSKDIIYRIMQRLSQRGIGIILISDDLPELLQ 487 Query: 482 NCDNLLLMKRGRIVRRFEVEGLSEGDLSHDLVSEQS 517 NCD +L+MK+GR+ ++ + LSE DL H L+SE + Sbjct: 488 NCDRILMMKKGRVASEYQADTLSEADLYHALLSEAA 523 >ref|YP_553910.1| sugar ABC transporter ATPase subunit [Burkholderia xenovorans LB400] gb|ABE34560.1| monosaccharide ABC transporter ATP-binding protein, CUT2 family [Burkholderia xenovorans LB400] Length = 545 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 341/509 (66%), Positives = 409/509 (80%) Query: 9 PDGAPAQEFLRLQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMIKIIAGAQP 68 P + FL++ G+HKRF GVHALRG+ L+ G+IYHLLGENGCGKST+IKII+GAQP Sbjct: 37 PQSEASLPFLQVVGVHKRFTGVHALRGVSLSFERGQIYHLLGENGCGKSTLIKIISGAQP 96 Query: 69 PSEGEIFIQGERVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLVRHQGRLAR 128 P EGE+ I+G R A L+ L SL+ GIETVYQDLSLLPNM+VAENVAL+++L H G+L R Sbjct: 97 PDEGELVIEGVRHARLSALESLAAGIETVYQDLSLLPNMNVAENVALTSELATHAGKLVR 156 Query: 129 LFDRGSLNDTAARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSARMVIMDEP 188 FDR L TAARAL AV LP TA F T +++LP+ATRQL+AIARAIA+ A+ VIMDEP Sbjct: 157 TFDRRELARTAARALEAVGLPGTAEFQATLIEQLPLATRQLVAIARAIASEAKFVIMDEP 216 Query: 189 TTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEF 248 TTSLTQKEVD L+ V+ LRA GV VLFVSHKLDEC+AIGG+ IV RDG+K+AQGPI +F Sbjct: 217 TTSLTQKEVDNLIAVLANLRAQGVTVLFVSHKLDECYAIGGEVIVLRDGQKMAQGPIAQF 276 Query: 249 TKARLGQLMTGKQLSEERYRVDAQLHKTRLEVRALTRAGAFEDVSFALREGEILGITGLL 308 TKA++ +LMTG+ LS ERYR A L+VR TRAG F DVSFAL GEILGITGLL Sbjct: 277 TKAQISELMTGRHLSNERYREGACEQNVVLDVRGYTRAGQFSDVSFALHGGEILGITGLL 336 Query: 309 DSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDRISEGLFLDKSI 368 DSGRNELA ALAGV PA GQ++LDG+ +SLR P DA H IGYVPEDR++EGLFLDKSI Sbjct: 337 DSGRNELARALAGVAPAQSGQVLLDGKAVSLRTPSDAKEHRIGYVPEDRLNEGLFLDKSI 396 Query: 369 RDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIATPDVDRPVQSLSGGNQQRVLIG 428 RDN+IT ++ +R +FG +D + Q + TV+ LQIATP VD+PVQSLSGGNQQRVLIG Sbjct: 397 RDNVITAMISSLRDRFGQVDRSRAQALAEQTVKDLQIATPGVDKPVQSLSGGNQQRVLIG 456 Query: 429 RWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLPELLQNCDNLLL 488 RWLAI+PRVLILHGPTVGVDVGSKDIIYRI+Q L+++G+G+ILISDDLPELLQNCD +L+ Sbjct: 457 RWLAIDPRVLILHGPTVGVDVGSKDIIYRIMQRLSQRGIGIILISDDLPELLQNCDRILM 516 Query: 489 MKRGRIVRRFEVEGLSEGDLSHDLVSEQS 517 MK+GR+ ++ LSE DL H L+SE + Sbjct: 517 MKKGRVAGEYQAATLSEADLYHALLSEAA 545