BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0814.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774441.1| sugar ABC transporter permease [Herbaspirill... 459 e-127 ref|YP_004752839.1| inner-membrane translocator [Collimonas fung... 440 e-121 ref|YP_004153407.1| inner-membrane translocator [Variovorax para... 400 e-109 ref|YP_003907058.1| inner-membrane translocator [Burkholderia sp... 371 e-101 ref|ZP_06838956.1| inner-membrane translocator [Burkholderia sp.... 369 e-100 >ref|YP_003774441.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62533.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 319/350 (91%), Positives = 328/350 (93%), Gaps = 3/350 (0%) Query: 1 MDASTLTRQNAHTDTSPALPPRSAAASLGALLKKNPSLFTFVLILLVVVTVALINPAFFQ 60 MDASTLTRQ A T + R SL ALLKKNPS FT +LI+LVV+TVALINPAFFQ Sbjct: 1 MDASTLTRQAADASTDAPVQRRP---SLAALLKKNPSAFTLLLIVLVVLTVALINPAFFQ 57 Query: 61 LAVLFDIVRACTTLGLFALGVMIVLAAGGIDVSFAAIAALTMYSITKVVMTYFPETHIAV 120 LAVLFDIVRACTTLGLFALGVMIVLAAGGIDVSFAAIAALTMYSITKVVMT+FPETHIAV Sbjct: 58 LAVLFDIVRACTTLGLFALGVMIVLAAGGIDVSFAAIAALTMYSITKVVMTWFPETHIAV 117 Query: 121 ILLAGAAGGTALGVLNGLLVDWLKAPSLIVTIGTQYLYRGILLTFVGTVFFMNVPHAMDQ 180 ILLAGA GG LGVLNGLLVDWLKAPSLIVTIGTQYLYRGILLTFVGTVFFMN+PHAMD Sbjct: 118 ILLAGAVGGAGLGVLNGLLVDWLKAPSLIVTIGTQYLYRGILLTFVGTVFFMNIPHAMDS 177 Query: 181 FGKLALARHDTASGLHAVLPATVLVLVLASALTWWLLNKTLMGRAVYAVGGSLAIAERLG 240 FGKL LARHDTA+GLHAVLPATVLVLVLAS LTWWLLN+TLMGRAVYAVGGSLAIAERLG Sbjct: 178 FGKLTLARHDTANGLHAVLPATVLVLVLASVLTWWLLNRTLMGRAVYAVGGSLAIAERLG 237 Query: 241 YKLRSVHLFVFGYAGFLSGLAGIVHVSSTRLANPFDLVGSELDVIAAVVLGGARITGGHG 300 YKLRSVHLFVFGYAGFLSGLAGIVHVSSTRLANPFDLVGSELDVIAAVVLGGARITGGHG Sbjct: 238 YKLRSVHLFVFGYAGFLSGLAGIVHVSSTRLANPFDLVGSELDVIAAVVLGGARITGGHG 297 Query: 301 SVVGTLLGVLLVTLINNVLILAGVPSTWQKAIIGGFIVLAGAVFALRREK 350 SV+GTLLGVLLVTLINNVLILAGVPSTWQKAIIGGFIVLAGAVFALRREK Sbjct: 298 SVMGTLLGVLLVTLINNVLILAGVPSTWQKAIIGGFIVLAGAVFALRREK 347 >ref|YP_004752839.1| inner-membrane translocator [Collimonas fungivorans Ter331] gb|AEK62016.1| inner-membrane translocator [Collimonas fungivorans Ter331] Length = 345 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 270/336 (80%), Positives = 298/336 (88%) Query: 13 TDTSPALPPRSAAASLGALLKKNPSLFTFVLILLVVVTVALINPAFFQLAVLFDIVRACT 72 T+ + A P L + L ++PS FT +LI+LV + + +NP FFQLA+LFDIVRACT Sbjct: 8 TNAATAASPARRKFLLRSWLTRHPSAFTLLLIVLVCIAIGALNPGFFQLAMLFDIVRACT 67 Query: 73 TLGLFALGVMIVLAAGGIDVSFAAIAALTMYSITKVVMTYFPETHIAVILLAGAAGGTAL 132 LGLF+LGVMIVLAAGGIDVSFAAIAALTMYSITKVV+ YFP+ +A+IL +GA GGTAL Sbjct: 68 VLGLFSLGVMIVLAAGGIDVSFAAIAALTMYSITKVVLVYFPDASMALILTSGAVGGTAL 127 Query: 133 GVLNGLLVDWLKAPSLIVTIGTQYLYRGILLTFVGTVFFMNVPHAMDQFGKLALARHDTA 192 GVLNGLLVDWLKAPSLIVTIGTQYLYRG+LLTFVGTVFFMN+PH+MD FGKLAL RHDTA Sbjct: 128 GVLNGLLVDWLKAPSLIVTIGTQYLYRGLLLTFVGTVFFMNIPHSMDAFGKLALWRHDTA 187 Query: 193 SGLHAVLPATVLVLVLASALTWWLLNKTLMGRAVYAVGGSLAIAERLGYKLRSVHLFVFG 252 GLHAVLPATVLVLV A LTWWLLN+TLMGRAVYA+GGSLAIAERLGY LR+VHLFVFG Sbjct: 188 EGLHAVLPATVLVLVAAGLLTWWLLNRTLMGRAVYAIGGSLAIAERLGYNLRTVHLFVFG 247 Query: 253 YAGFLSGLAGIVHVSSTRLANPFDLVGSELDVIAAVVLGGARITGGHGSVVGTLLGVLLV 312 YAGFLSGLAGIVHVSSTRLANPFDLVGSELDVIAAV+LGGARITGG G+VVGTLLGV+LV Sbjct: 248 YAGFLSGLAGIVHVSSTRLANPFDLVGSELDVIAAVILGGARITGGSGTVVGTLLGVVLV 307 Query: 313 TLINNVLILAGVPSTWQKAIIGGFIVLAGAVFALRR 348 TLINNVLILAGVPSTWQK I+G FIVLAG VFA +R Sbjct: 308 TLINNVLILAGVPSTWQKVIVGAFIVLAGTVFASKR 343 >ref|YP_004153407.1| inner-membrane translocator [Variovorax paradoxus EPS] gb|ADU35296.1| inner-membrane translocator [Variovorax paradoxus EPS] Length = 352 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 255/318 (80%), Positives = 279/318 (87%) Query: 32 LKKNPSLFTFVLILLVVVTVALINPAFFQLAVLFDIVRACTTLGLFALGVMIVLAAGGID 91 L + PS+FT LI+LV + V INP FFQL VL DIVRACT LGLFALGV+IVLAAGGID Sbjct: 34 LAQRPSVFTLALIVLVCLAVGAINPGFFQLPVLIDIVRACTVLGLFALGVLIVLAAGGID 93 Query: 92 VSFAAIAALTMYSITKVVMTYFPETHIAVILLAGAAGGTALGVLNGLLVDWLKAPSLIVT 151 VSFAAIAALTMYSITK+V+ YFPE IA++L AGA G LGV NGLLV WLKAPSLIVT Sbjct: 94 VSFAAIAALTMYSITKLVLNYFPEAPIALLLAAGAVSGAVLGVFNGLLVHWLKAPSLIVT 153 Query: 152 IGTQYLYRGILLTFVGTVFFMNVPHAMDQFGKLALARHDTASGLHAVLPATVLVLVLASA 211 IGTQYLYRGILLTFVGTVFFMNVP MD FGKLAL R DTA GLH VLPATVLVL A+ Sbjct: 154 IGTQYLYRGILLTFVGTVFFMNVPAPMDAFGKLALWRFDTAQGLHVVLPATVLVLAGAAV 213 Query: 212 LTWWLLNKTLMGRAVYAVGGSLAIAERLGYKLRSVHLFVFGYAGFLSGLAGIVHVSSTRL 271 LTWWLLN+TL+GRAVYA+GGSLAIAERLGY LR+VH+FVF YAGFLSGLAGIVHVSSTRL Sbjct: 214 LTWWLLNRTLIGRAVYAIGGSLAIAERLGYNLRTVHIFVFAYAGFLSGLAGIVHVSSTRL 273 Query: 272 ANPFDLVGSELDVIAAVVLGGARITGGHGSVVGTLLGVLLVTLINNVLILAGVPSTWQKA 331 ANPFDLVG+ELDVIAAV+LGGARITGG G+V GTLLGV+LVTLINNVLILAGVPSTWQK Sbjct: 274 ANPFDLVGNELDVIAAVILGGARITGGSGTVGGTLLGVVLVTLINNVLILAGVPSTWQKV 333 Query: 332 IIGGFIVLAGAVFALRRE 349 IIG FI++AGA FA+R++ Sbjct: 334 IIGAFILVAGACFAMRKQ 351 >ref|YP_003907058.1| inner-membrane translocator [Burkholderia sp. CCGE1003] gb|ADN57767.1| inner-membrane translocator [Burkholderia sp. CCGE1003] Length = 368 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 224/343 (65%), Positives = 270/343 (78%) Query: 8 RQNAHTDTSPALPPRSAAASLGALLKKNPSLFTFVLILLVVVTVALINPAFFQLAVLFDI 67 RQ T + P L L +NP FT LI++ + V INP FFQ A LFD+ Sbjct: 26 RQTMTTPNVVEVAPSVEPQGLRMRLARNPEWFTVALIVVTCLIVGAINPRFFQFATLFDL 85 Query: 68 VRACTTLGLFALGVMIVLAAGGIDVSFAAIAALTMYSITKVVMTYFPETHIAVILLAGAA 127 + + TT+ LFALG ++VLA+GGIDVSF AIAALTMY ITK V ++P+ A+IL+ GA Sbjct: 86 LHSATTMSLFALGTLVVLASGGIDVSFTAIAALTMYGITKAVFAWWPDAPFALILVTGAL 145 Query: 128 GGTALGVLNGLLVDWLKAPSLIVTIGTQYLYRGILLTFVGTVFFMNVPHAMDQFGKLALA 187 GG LGV+NGLLV LKAPSLIVTIGTQYLYRG+LLTF+GT FFMN+PH+MD FG++ L Sbjct: 146 GGVLLGVVNGLLVHRLKAPSLIVTIGTQYLYRGLLLTFIGTTFFMNIPHSMDHFGRIPLF 205 Query: 188 RHDTASGLHAVLPATVLVLVLASALTWWLLNKTLMGRAVYAVGGSLAIAERLGYKLRSVH 247 + TA GL AVLPA+VL LV + +TWWLLN+T+MGR VYA+GGSLAIAERLGY LR++H Sbjct: 206 FYHTADGLRAVLPASVLALVATALVTWWLLNRTMMGRGVYAMGGSLAIAERLGYNLRAIH 265 Query: 248 LFVFGYAGFLSGLAGIVHVSSTRLANPFDLVGSELDVIAAVVLGGARITGGHGSVVGTLL 307 LFVFGY G L+G+AGI+HVS+ RLANPFDLVGSELDVIAAV+LGGARITGG G+V GTLL Sbjct: 266 LFVFGYTGMLAGIAGILHVSNNRLANPFDLVGSELDVIAAVILGGARITGGTGTVAGTLL 325 Query: 308 GVLLVTLINNVLILAGVPSTWQKAIIGGFIVLAGAVFALRREK 350 GV+LVTLI +VLIL GVPSTWQK IIG FI+LAG +FAL+R++ Sbjct: 326 GVVLVTLIKSVLILVGVPSTWQKVIIGAFILLAGTLFALQRKR 368 >ref|ZP_06838956.1| inner-membrane translocator [Burkholderia sp. Ch1-1] gb|EFG73402.1| inner-membrane translocator [Burkholderia sp. Ch1-1] Length = 352 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 227/341 (66%), Positives = 271/341 (79%) Query: 9 QNAHTDTSPALPPRSAAASLGALLKKNPSLFTFVLILLVVVTVALINPAFFQLAVLFDIV 68 Q T T + P L A L +NP FT LI + + V INP FFQLA LFD++ Sbjct: 11 QTMTTPTIVEVAPEVKPPGLRARLARNPEWFTVALIAVTCLIVGAINPRFFQLATLFDLL 70 Query: 69 RACTTLGLFALGVMIVLAAGGIDVSFAAIAALTMYSITKVVMTYFPETHIAVILLAGAAG 128 + TT+ LFALG ++VLA+GGIDVSF AIAALTMY ITK V ++P+ A+ILL GA G Sbjct: 71 HSATTMSLFALGTLVVLASGGIDVSFTAIAALTMYGITKAVFAWWPDAPFALILLTGALG 130 Query: 129 GTALGVLNGLLVDWLKAPSLIVTIGTQYLYRGILLTFVGTVFFMNVPHAMDQFGKLALAR 188 G LGV+NGLLV LKAPSLIVTIGTQYLYRG+LLTF+GT FFMN+PH+MD+FG++ L Sbjct: 131 GVVLGVINGLLVHRLKAPSLIVTIGTQYLYRGLLLTFIGTTFFMNIPHSMDRFGRIPLFF 190 Query: 189 HDTASGLHAVLPATVLVLVLASALTWWLLNKTLMGRAVYAVGGSLAIAERLGYKLRSVHL 248 + TA GL AVLP +V+ LV A+ LTWWLLN+T+MGR VYA+GGSLAIAERLGY LR++HL Sbjct: 191 YHTADGLRAVLPVSVVALVAAAVLTWWLLNRTMMGRGVYAMGGSLAIAERLGYNLRAIHL 250 Query: 249 FVFGYAGFLSGLAGIVHVSSTRLANPFDLVGSELDVIAAVVLGGARITGGHGSVVGTLLG 308 FVFGY G L+G+AGI+HVS+ RLANPFDLVGSELDVIAAV+LGGARITGG G+V GTLLG Sbjct: 251 FVFGYTGMLAGIAGILHVSNNRLANPFDLVGSELDVIAAVILGGARITGGTGTVAGTLLG 310 Query: 309 VLLVTLINNVLILAGVPSTWQKAIIGGFIVLAGAVFALRRE 349 V LVTLIN+VLIL GVPSTWQK IIG FI++AG +FAL+R+ Sbjct: 311 VALVTLINSVLILVGVPSTWQKVIIGAFILIAGTLFALQRK 351