BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0811.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGH82882.1| RNA polymerase sigma-70 family protein [Pseudomon...   172   2e-41
ref|ZP_05635944.1| RNA polymerase sigma-70 family protein [Pseud...   171   3e-41
ref|ZP_07003226.1| hypothetical protein PSA3335_0541 [Pseudomona...   171   4e-41
gb|EGH71845.1| hypothetical protein PSYAR_14927 [Pseudomonas syr...   169   1e-40
ref|ZP_06495482.1| hypothetical protein PsyrpsF_15107 [Pseudomon...   169   2e-40

>gb|EGH82882.1| RNA polymerase sigma-70 family protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 235

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 111/146 (76%), Gaps = 2/146 (1%)

Query: 14  WWESLQFWRWSTGAALACSVLLAVLMLRAEPPARAPAYMVVLVAPQDKAPGWVVQTGGSG 73
           WW++L  WR   GA LA S++L + +L   P    P+Y+VVLV PQDKAPGWVVQ   S 
Sbjct: 91  WWDNLSVWRGLAGAGLAASLVLGMTLLTRAPAQ--PSYLVVLVGPQDKAPGWVVQASNSQ 148

Query: 74  RLNLIPLGVATVPQEKALQFWTKGANWNGPVSLGIVKPGRTQEVPLDKLPPLQPDQLFEI 133
            + LIPLGV  VP +KAL+FWTKG +W GPVSLG+VKPG++  VPLDKLPPLQP+QLFE+
Sbjct: 149 EIQLIPLGVFEVPNDKALEFWTKGDDWQGPVSLGLVKPGQSLHVPLDKLPPLQPNQLFEL 208

Query: 134 TLEPGNGSPTGRPTGPILYIGRAVKV 159
           TLE   GSP G+PTGPI +IGRAVKV
Sbjct: 209 TLEKSTGSPIGKPTGPIQFIGRAVKV 234


>ref|ZP_05635944.1| RNA polymerase sigma-70 family protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gb|EGH89593.1| RNA polymerase sigma-70 family protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 235

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 111/146 (76%), Gaps = 2/146 (1%)

Query: 14  WWESLQFWRWSTGAALACSVLLAVLMLRAEPPARAPAYMVVLVAPQDKAPGWVVQTGGSG 73
           WW++L  WR   GA LA S++L + +L   P    P+Y+VVLV PQDKAPGWVVQ   S 
Sbjct: 91  WWDNLSVWRGLAGAGLAASLVLGMTLLTRAPAQ--PSYLVVLVGPQDKAPGWVVQASNSQ 148

Query: 74  RLNLIPLGVATVPQEKALQFWTKGANWNGPVSLGIVKPGRTQEVPLDKLPPLQPDQLFEI 133
            + LIPLGV  VP +KAL+FWTKG +W GPVSLG+VKPG++  VPLDKLPPLQP+QLFE+
Sbjct: 149 EIQLIPLGVFEVPNDKALEFWTKGDDWQGPVSLGLVKPGQSLHVPLDKLPPLQPNQLFEL 208

Query: 134 TLEPGNGSPTGRPTGPILYIGRAVKV 159
           TLE   GSP G+PTGPI +IGRAVKV
Sbjct: 209 TLEKSTGSPIGKPTGPIQFIGRAVKV 234


>ref|ZP_07003226.1| hypothetical protein PSA3335_0541 [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gb|EFI01407.1| hypothetical protein PSA3335_0541 [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 235

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 111/146 (76%), Gaps = 2/146 (1%)

Query: 14  WWESLQFWRWSTGAALACSVLLAVLMLRAEPPARAPAYMVVLVAPQDKAPGWVVQTGGSG 73
           WW++L  WR   GA LA S++L + +L   P    P+Y+VVLV PQDKAPGWVVQ   S 
Sbjct: 91  WWDNLSVWRGLAGAGLAASLVLGMTLLTRAPAQ--PSYLVVLVGPQDKAPGWVVQASNSQ 148

Query: 74  RLNLIPLGVATVPQEKALQFWTKGANWNGPVSLGIVKPGRTQEVPLDKLPPLQPDQLFEI 133
            + LIPLGV  VP +KAL+FWTKG +W GPVSLG+VKPG++  VPLDKLPPLQP+QLFE+
Sbjct: 149 EIQLIPLGVFEVPNDKALEFWTKGDDWQGPVSLGLVKPGQSLHVPLDKLPPLQPNQLFEL 208

Query: 134 TLEPGNGSPTGRPTGPILYIGRAVKV 159
           TLE   GSP G+PTGPI +IGRAVKV
Sbjct: 209 TLEKSTGSPIGKPTGPIQFIGRAVKV 234


>gb|EGH71845.1| hypothetical protein PSYAR_14927 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 235

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 111/146 (76%), Gaps = 2/146 (1%)

Query: 14  WWESLQFWRWSTGAALACSVLLAVLMLRAEPPARAPAYMVVLVAPQDKAPGWVVQTGGSG 73
           WW++L  WR   GA LA S++L + +L   P    P+Y+VVLV PQDKAPGWVVQ   S 
Sbjct: 91  WWDNLSIWRGLAGAGLAASLVLGMTLLTRAPAQ--PSYLVVLVGPQDKAPGWVVQASNSQ 148

Query: 74  RLNLIPLGVATVPQEKALQFWTKGANWNGPVSLGIVKPGRTQEVPLDKLPPLQPDQLFEI 133
            + LIPLGV  VP +KAL+FWTKG +W GPVSLG+VKPG++  VPLDKLPPLQP+QLFE+
Sbjct: 149 EIQLIPLGVFEVPTDKALEFWTKGDDWQGPVSLGLVKPGQSLHVPLDKLPPLQPNQLFEL 208

Query: 134 TLEPGNGSPTGRPTGPILYIGRAVKV 159
           TLE   GSP G+PTGPI +IGRAVKV
Sbjct: 209 TLEKSTGSPIGKPTGPIQFIGRAVKV 234


>ref|ZP_06495482.1| hypothetical protein PsyrpsF_15107 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 235

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 110/146 (75%), Gaps = 2/146 (1%)

Query: 14  WWESLQFWRWSTGAALACSVLLAVLMLRAEPPARAPAYMVVLVAPQDKAPGWVVQTGGSG 73
           WW++L  WR   GA LA S++L + +L   P    P+Y+VVLV PQDKAPGWVVQ   S 
Sbjct: 91  WWDNLSIWRGLAGAGLAASLVLGMTLLTRAPAQ--PSYLVVLVGPQDKAPGWVVQASNSQ 148

Query: 74  RLNLIPLGVATVPQEKALQFWTKGANWNGPVSLGIVKPGRTQEVPLDKLPPLQPDQLFEI 133
            + LIPLGV  VP +KAL+FWTKG +W GPVSLG+VKPG +  VPLDKLPPLQP+QLFE+
Sbjct: 149 EIQLIPLGVFEVPADKALEFWTKGDDWQGPVSLGLVKPGESLHVPLDKLPPLQPNQLFEL 208

Query: 134 TLEPGNGSPTGRPTGPILYIGRAVKV 159
           TLE   GSP G+PTGPI +IGRAVKV
Sbjct: 209 TLEKSTGSPIGKPTGPIQFIGRAVKV 234