BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0807.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEF09326.1| predicted protein [Populus trichocarpa]                138   2e-31
ref|YP_001898023.1| hypothetical protein Rpic_0436 [Ralstonia pi...   127   4e-28

>gb|EEF09326.1| predicted protein [Populus trichocarpa]
          Length = 188

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/129 (64%), Positives = 103/129 (79%)

Query: 26  MDAQQLLSDFLSSAHGTDALQALGQQGVSAGDAQAFLGHATDAAYEQVQAQSSGMMGDHA 85
           MD QQL+S+FL+S HGT A QAL  QGV+  DAQ  LG   + A+  V+ Q  G++GDHA
Sbjct: 60  MDMQQLVSEFLASDHGTQAAQALADQGVNPADAQQMLGQVAETAHAHVEEQGGGLLGDHA 119

Query: 86  GKSFFSAFASGLVRGDGFFKSLLDGGEGVVVGRVAEALAERAGLDPSTAASIAAAATPYV 145
           GKSFF+AFA+GLV GDGFFKSL +GGEG++ GRVAE+L E+ GLDP TAA++AAAATPY+
Sbjct: 120 GKSFFAAFAAGLVHGDGFFKSLTEGGEGILTGRVAESLGEKMGLDPGTAATVAAAATPYM 179

Query: 146 AAFLKQKLA 154
            AFLK+KLA
Sbjct: 180 VAFLKEKLA 188


>ref|YP_001898023.1| hypothetical protein Rpic_0436 [Ralstonia pickettii 12J]
 gb|ACD25591.1| conserved hypothetical protein [Ralstonia pickettii 12J]
          Length = 129

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 77/129 (59%), Positives = 106/129 (82%)

Query: 26  MDAQQLLSDFLSSAHGTDALQALGQQGVSAGDAQAFLGHATDAAYEQVQAQSSGMMGDHA 85
           MD QQL+S+FL+S  G+ A QAL  +G+S  DAQA L  A + A+  V+ Q++G+MG+H 
Sbjct: 1   MDVQQLVSEFLASEQGSQATQALAARGISTDDAQAMLSQAAETAHAHVEEQNAGLMGEHG 60

Query: 86  GKSFFSAFASGLVRGDGFFKSLLDGGEGVVVGRVAEALAERAGLDPSTAASIAAAATPYV 145
           G+SFF+AFA+GLVRGDGFFKSL++GGEG++ GRVAE+LA + G+DPS A+++AAAATPY+
Sbjct: 61  GRSFFAAFAAGLVRGDGFFKSLVEGGEGILTGRVAESLAGKMGIDPSIASTVAAAATPYL 120

Query: 146 AAFLKQKLA 154
            AFLK++LA
Sbjct: 121 VAFLKERLA 129