BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0803.p         (158 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_05823718.1| predicted protein [Acinetobacter sp. RUH2624]...    97   9e-19
ref|ZP_05823717.1| predicted protein [Acinetobacter sp. RUH2624]...    86   2e-15
ref|ZP_03830270.1| hypothetical protein PcarcW_02594 [Pectobacte...    86   2e-15
gb|EGY51661.1| hypothetical protein HMPREF9371_2125 [Neisseria s...    57   7e-07
ref|ZP_08132780.1| hypothetical protein HMPREF9098_0507 [Kingell...    57   9e-07

>ref|ZP_05823718.1| predicted protein [Acinetobacter sp. RUH2624]
 gb|EEX01082.1| predicted protein [Acinetobacter sp. RUH2624]
          Length = 124

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 2/117 (1%)

Query: 16  DNLDTESMLRQPNIPCFCKKGGGKLELSFHDPLPEATGFIHDWDSEKIDQRAPAGGGGAY 75
           D+L TE+ML+   IPC CK    K E+ F    P+ TGF+  W+ ++ID R  AG GG Y
Sbjct: 10  DDLHTENMLKTSQIPCLCKIAE-KFEIDFLVAYPQVTGFVTGWEYKEIDLRVSAGAGGEY 68

Query: 76  THYGFAMVTLRRIDKENYNILDLSFFETSYPGWFPIIRDGEWAEPVSFHTPEELAEI 132
            HY + ++TL +++K+ Y I +LS FE+   GW P++ + E++       P+ L ++
Sbjct: 69  LHYKYGLITLSKLEKDLYIIENLSMFESG-SGWLPVVENREYSHVAEVEEPDWLKDL 124


>ref|ZP_05823717.1| predicted protein [Acinetobacter sp. RUH2624]
 gb|EEX01081.1| predicted protein [Acinetobacter sp. RUH2624]
          Length = 124

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 2/111 (1%)

Query: 10  LTILLPDNLDTESMLRQPNIPCFCKKGGGKLELSFHDPLPEATGFIHDWDSEKIDQRAPA 69
           L + LP+NL +E ML   NIPC  +       + F + +P  +G + +W   ++++R PA
Sbjct: 4   LDLKLPNNLHSEMMLECENIPCLVRINS-IFNIDFFETVPHISGQVLEWSWSELNKRVPA 62

Query: 70  GGGGAYTHYGFAMVTLRRIDKENYNILDLSFFETSYPGWFPIIRDGEWAEP 120
           G GG Y +Y  +++TL RIDK+++ ILDLS F     GW  +I +  +AEP
Sbjct: 63  GSGGEYMYYKRSLITLERIDKDHFKILDLSMFLNGI-GWCKVIENSIYAEP 112


>ref|ZP_03830270.1| hypothetical protein PcarcW_02594 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 128

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 8   MYLTILLPDNLDTESMLRQPNIPCFCKKGGGKLELSFHDPLPEATGFIHDWDSEKIDQRA 67
           M L I  PDNL T  +  Q NIPC  K    K E+ F   +P   G + +WD + +++RA
Sbjct: 1   MILEINFPDNLITGLLSEQKNIPCTIKVSD-KFEVIFSTVVPCTAGIMREWDRQLLEERA 59

Query: 68  PAGGGGAYTHYGFAMVTLRRIDKENYNILDLSFFETSYPGWFPIIRDGEWAEPVSFHTPE 127
            A  GG YTH   A++TL +  K++Y ++DL  F   + GW P+I+D E+A P  F   +
Sbjct: 60  IARAGGVYTHDEPALITLNKKTKDSYEVVDLYVFYNDF-GWCPVIKDREYAVPNQFWDSD 118

Query: 128 E 128
           E
Sbjct: 119 E 119


>gb|EGY51661.1| hypothetical protein HMPREF9371_2125 [Neisseria shayeganii 871]
          Length = 136

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 8/124 (6%)

Query: 20  TESMLRQPNIPCFCKKGGGKLELSFHDPLPEATGF-IHDWDSEKIDQRAPAGGGGAYTHY 78
           +E +  +  IPC C+      E+ F +   +     ++D+D  +I   +P G GG +  Y
Sbjct: 15  SEFIFERKYIPCLCRAKPSLFEIFFSEERWKNIKLEVNDFDINRIGHYSPIGVGGPWWIY 74

Query: 79  GFAMVTLRRIDK--ENYNILDLSFFETSYPGWFPIIRDGEWAEPVSFHTPEELAEIARVD 136
             A++TLRR +   +    +DL+FFE  Y GWF  I+DG++ E   +H  +E  ++   +
Sbjct: 75  SDALITLRRHESIPDRLEFVDLAFFEL-YAGWFWAIKDGKFTE--DYHGKDEEEQLN--E 129

Query: 137 ALYP 140
            +YP
Sbjct: 130 TVYP 133


>ref|ZP_08132780.1| hypothetical protein HMPREF9098_0507 [Kingella denitrificans ATCC
           33394]
 gb|EGC18358.1| hypothetical protein HMPREF9098_0507 [Kingella denitrificans ATCC
           33394]
          Length = 140

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 10/138 (7%)

Query: 8   MYLTILLPDNL--DTESMLRQPNIPCFCKKGGGKLELSFH-DPLPEATGFIHDWDSEKID 64
           MY+T  L D     +E +  +  +PC C+      E+ F  D L      + D++ + + 
Sbjct: 5   MYITNFLNDGYYPTSELLFSRKYVPCICRIDNDLFEIVFTLDRLENLKLIVKDFNIKILG 64

Query: 65  QRAPAGGGGAYTHYGFAMVTLR--RIDKENYNILDLSFFETSYPGWFPIIRDGEWAEPVS 122
           Q A    GG +     A++TLR   +D +   I+DL+FF+  + GWF  I+DGE+ E   
Sbjct: 65  QYAAIAVGGVWKIEREALITLRFDPLDSQKIEIIDLAFFDL-FAGWFWAIKDGEFTEDYV 123

Query: 123 FHTPEELAEIARVDALYP 140
               EEL       A+YP
Sbjct: 124 GKDDEELLNA----AVYP 137