BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0801.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002895844.1| hypothetical protein GBP346_A1122 [Burkholde...    89   1e-16
ref|ZP_02487472.1| cell surface protein [Burkholderia pseudomall...    89   2e-16
ref|ZP_01767763.1| hypothetical protein BURPS305_2766 [Burkholde...    87   9e-16

>ref|YP_002895844.1| hypothetical protein GBP346_A1122 [Burkholderia pseudomallei
          MSHR346]
 gb|ACQ95683.1| hypothetical protein GBP346_A1122 [Burkholderia pseudomallei
          MSHR346]
          Length = 93

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 63/90 (70%)

Query: 1  MLNGYPEEEELRRRILNQLSWHASSDVVGVLWLGYLAGLLEWGVIDIDVYGRLKNLLPLV 60
          M+NGYP E+ELR RI  Q++   ++D+V ++W GYL GLLEWGVI++DV+ RL  LLP +
Sbjct: 1  MVNGYPTEQELRERIERQIARRGATDIVALIWHGYLTGLLEWGVIELDVFDRLSALLPAI 60

Query: 61 GHKEVHEMFSDEPLSSEDAREIEAYLNTRK 90
          GH E+ E+  DE  + E  REI   + T+K
Sbjct: 61 GHLELVELSIDEQATLELEREITESMRTKK 90


>ref|ZP_02487472.1| cell surface protein [Burkholderia pseudomallei 7894]
          Length = 2848

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 4/89 (4%)

Query: 1    MLNGYPEEEELRRRILNQLSWHASSDVVGVLWLGYLAGLLEWGVIDIDVYGRLKNLLPLV 60
            M+NGYP  EELR RIL QL W   +  V  +W GYL  LLEWG+++I  +  L +LLP+ 
Sbjct: 2755 MINGYPTAEELRNRILRQLEWRGPTTEVASVWRGYLTALLEWGLLEISDHDALASLLPVK 2814

Query: 61   GHKEVHEMFSDEPLSSEDAREIEAYLNTR 89
            G KEV E+ +DEPL     +E +AY++ +
Sbjct: 2815 GVKEVVELSADEPLD----KESDAYIDEQ 2839


>ref|ZP_01767763.1| hypothetical protein BURPS305_2766 [Burkholderia pseudomallei
          305]
 gb|EBA47445.1| hypothetical protein BURPS305_2766 [Burkholderia pseudomallei
          305]
          Length = 93

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 61/90 (67%)

Query: 1  MLNGYPEEEELRRRILNQLSWHASSDVVGVLWLGYLAGLLEWGVIDIDVYGRLKNLLPLV 60
          M+NGYP E+ELR RI  Q++   ++D V ++W GYL GLLEWGVI++DV+ RL  LLP +
Sbjct: 1  MVNGYPTEQELRERIERQIARRGATDTVALIWHGYLTGLLEWGVIELDVFDRLSALLPAI 60

Query: 61 GHKEVHEMFSDEPLSSEDAREIEAYLNTRK 90
          GH E+ E+  DE  + E  REI   +  +K
Sbjct: 61 GHLELVELSIDEQATLELEREITESMRAKK 90