BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0787.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774096.1| transmembrane protein [Herbaspirillum serope...   145   2e-33
ref|ZP_08276158.1| putative transmembrane protein [Oxalobacterac...    97   6e-19
ref|YP_001898076.1| branched-chain amino acid transport [Ralston...    89   3e-16
ref|YP_002980454.1| branched-chain amino acid transport [Ralston...    88   4e-16
ref|ZP_07675378.1| AzlD family protein [Ralstonia sp. 5_7_47FAA]...    88   4e-16

>ref|YP_003774096.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62188.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 89/107 (83%), Positives = 101/107 (94%)

Query: 1   MSDWYVWGAIVLLTISTVVTRSGFFLFGHAVKLPPRVKHALSYAPAAAMAAIIFPDLVTS 60
           MSDWY+W AIVL+T+ST++TRSGFFLFGHAVKLPPR+KHAL YAPAAAMAAIIFPDLVT+
Sbjct: 1   MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAAAMAAIIFPDLVTA 60

Query: 61  GGAIEMSLANPKLLAGIGAGVFFAATRHLLGTIVAGMSLFTLLRWLL 107
            G IE+SLANPKLLAGIG  +FFAATRHLLGTIVAGM+LFT+LRW+L
Sbjct: 61  RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLRWML 107


>ref|ZP_08276158.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30370.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 107

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 64/106 (60%), Positives = 82/106 (77%)

Query: 1   MSDWYVWGAIVLLTISTVVTRSGFFLFGHAVKLPPRVKHALSYAPAAAMAAIIFPDLVTS 60
           M+   +W  I LL ++TV+TR  FFL GHAVKLP +V+HAL YAPAAAMAAI+ PDLV  
Sbjct: 1   MTTTEIWITIGLLMLATVLTRCSFFLLGHAVKLPEKVQHALRYAPAAAMAAIVAPDLVLV 60

Query: 61  GGAIEMSLANPKLLAGIGAGVFFAATRHLLGTIVAGMSLFTLLRWL 106
           GG +++   NP+LLAG+GA  FF AT+HLLGTI+ GM+L+T+LR L
Sbjct: 61  GGTLDLHWTNPRLLAGLGAVAFFLATKHLLGTIIIGMALYTVLRLL 106


>ref|YP_001898076.1| branched-chain amino acid transport [Ralstonia pickettii 12J]
 gb|ACD25644.1| branched-chain amino acid transport [Ralstonia pickettii 12J]
          Length = 107

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 71/104 (68%)

Query: 1   MSDWYVWGAIVLLTISTVVTRSGFFLFGHAVKLPPRVKHALSYAPAAAMAAIIFPDLVTS 60
           MS   +W  I  +T+ T+VTRS F + G+ + LP RV+HAL +APAAA+ AI+ PDL+ +
Sbjct: 1   MSALEIWLVIAGMTVVTIVTRSLFLIVGNRMTLPTRVQHALRFAPAAALVAIVLPDLLWN 60

Query: 61  GGAIEMSLANPKLLAGIGAGVFFAATRHLLGTIVAGMSLFTLLR 104
            G  + S  NP+L+AGI A  F+ ATR +LG I  GM +FT+LR
Sbjct: 61  HGHFDASWTNPRLMAGIAATAFYVATRRMLGMIFVGMGVFTVLR 104


>ref|YP_002980454.1| branched-chain amino acid transport [Ralstonia pickettii 12D]
 gb|ACS61782.1| branched-chain amino acid transport [Ralstonia pickettii 12D]
          Length = 107

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 70/104 (67%)

Query: 1   MSDWYVWGAIVLLTISTVVTRSGFFLFGHAVKLPPRVKHALSYAPAAAMAAIIFPDLVTS 60
           MS   +W  I  +T+ T+VTRS F + G  + LP RV+HAL +APAAA+ AI+ PDL+ +
Sbjct: 1   MSALQIWLVIAGMTVVTIVTRSLFLIVGDRMTLPTRVQHALRFAPAAALVAIVLPDLLWN 60

Query: 61  GGAIEMSLANPKLLAGIGAGVFFAATRHLLGTIVAGMSLFTLLR 104
            G  + S  NP+L+AGI A  F+ ATR +LG I  GM +FT+LR
Sbjct: 61  QGHFDASWTNPRLMAGIAATAFYVATRRMLGMIFVGMGVFTVLR 104


>ref|ZP_07675378.1| AzlD family protein [Ralstonia sp. 5_7_47FAA]
 gb|EFP66214.1| AzlD family protein [Ralstonia sp. 5_7_47FAA]
          Length = 107

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 70/104 (67%)

Query: 1   MSDWYVWGAIVLLTISTVVTRSGFFLFGHAVKLPPRVKHALSYAPAAAMAAIIFPDLVTS 60
           MS   +W  I  +T+ T+VTRS F + G  + LP RV+HAL +APAAA+ AI+ PDL+ +
Sbjct: 1   MSALEIWLVIAGMTVVTIVTRSLFLIVGDRMTLPTRVQHALRFAPAAALVAIVLPDLLWN 60

Query: 61  GGAIEMSLANPKLLAGIGAGVFFAATRHLLGTIVAGMSLFTLLR 104
            G  + S  NP+L+AGI A  F+ ATR +LG I  GM +FT+LR
Sbjct: 61  QGHFDASWTNPRLMAGIAATAFYVATRRMLGMIFVGMGVFTVLR 104