BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0785.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774095.1| branched-chain amino acid permease [Herbaspi... 390 e-106 ref|ZP_08276159.1| AzlC family protein [Oxalobacteraceae bacteri... 272 5e-71 gb|EEE72624.1| predicted protein [Populus trichocarpa] 192 5e-47 ref|YP_294789.1| AzlC-like [Ralstonia eutropha JMP134] >gi|72117... 191 1e-46 ref|YP_582652.1| branched-chain amino acid transport protein [Cu... 191 1e-46 >ref|YP_003774095.1| branched-chain amino acid permease [Herbaspirillum seropedicae SmR1] gb|ADJ62187.1| branched-chain amino acid permease (azaleucin resistance) protein [Herbaspirillum seropedicae SmR1] Length = 261 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 213/240 (88%), Positives = 227/240 (94%) Query: 38 RRIEKEAFQEGWRASASTIPAVAAWGVVSGMAMVKSGMTLWQSLAMTLTVYAGSAQFAVL 97 RRIEKEAFQEGWRASASTIPAV AWGVVSGMAMVKSGM+++QSL M+L VYAGSAQFAVL Sbjct: 22 RRIEKEAFQEGWRASASTIPAVLAWGVVSGMAMVKSGMSIFQSLGMSLLVYAGSAQFAVL 81 Query: 98 PLLAAHTPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWYGFFNGDISMAFFPQR 157 PLLA TPLLVVFFTAMIVNLRF+IFSAAVAPHFEHLPWYRR+WYGFFNGDISMAFFPQR Sbjct: 82 PLLAVGTPLLVVFFTAMIVNLRFIIFSAAVAPHFEHLPWYRRIWYGFFNGDISMAFFPQR 141 Query: 158 YPPSTFHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIPESWNIGFAGTLALIAVMI 217 +PPSTF QPAGKIGYF+AICYPGW+AWQLGATIGILL SQIPESWNIGFAGTLALIA+MI Sbjct: 142 FPPSTFGQPAGKIGYFSAICYPGWLAWQLGATIGILLASQIPESWNIGFAGTLALIAIMI 201 Query: 218 PMTSSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAMLADKLLPGSGSDGDAEA 277 PMTSSLPALAGVVVSGTVAVLAL+LPYRLGLLLAMVLGM+AAMLADKLLPG + + A Sbjct: 202 PMTSSLPALAGVVVSGTVAVLALELPYRLGLLLAMVLGMSAAMLADKLLPGKDEEEELAA 261 >ref|ZP_08276159.1| AzlC family protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF30371.1| AzlC family protein [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 151/239 (63%), Positives = 188/239 (78%) Query: 28 ATTATAALAARRIEKEAFQEGWRASASTIPAVAAWGVVSGMAMVKSGMTLWQSLAMTLTV 87 + TA+ + IEK AF ++ SA+T+P + AWG+VSGMAMVKSG+T+WQ+L M+ V Sbjct: 4 SETASGHQSPAIIEKRAFSAAFKVSAATMPGIFAWGLVSGMAMVKSGLTIWQALGMSFFV 63 Query: 88 YAGSAQFAVLPLLAAHTPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWYGFFNG 147 +AGSAQ A LPL+AA+ P VVF TA++VNLRFVIF+AA+ PHF HL W +R+WYG+FN Sbjct: 64 FAGSAQLAALPLIAANAPEWVVFVTALVVNLRFVIFAAAIGPHFAHLRWKQRLWYGYFNA 123 Query: 148 DISMAFFPQRYPPSTFHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIPESWNIGFA 207 DI+M FFP+R+P T HQPAGK+GYF ICYP W AWQ GA GILL SQIPESW IGFA Sbjct: 124 DITMGFFPRRFPAETLHQPAGKVGYFTGICYPNWCAWQSGAVAGILLASQIPESWGIGFA 183 Query: 208 GTLALIAVMIPMTSSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAMLADKLL 266 GTLAL+AVMIP+T +L AL GV+V+GTVA+ A LPYRLGLL+A+V+GM AML D L+ Sbjct: 184 GTLALLAVMIPLTINLAALGGVLVAGTVAIAAAQLPYRLGLLVAVVVGMMVAMLIDYLM 242 >gb|EEE72624.1| predicted protein [Populus trichocarpa] Length = 301 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 109/226 (48%), Positives = 150/226 (66%), Gaps = 2/226 (0%) Query: 40 IEKEAFQEGWRASASTIPAVAAWGVVSGMAMVKSGMTLWQSLAMTLTVYAGSAQFAVLPL 99 +E++AF EG R A PA+ +WG+V+G+AM KS +T+ +++ M+L VYAGSAQ AVLPL Sbjct: 55 VERDAFLEGARFFARFQPAIFSWGLVTGVAMSKSALTVPEAIGMSLLVYAGSAQLAVLPL 114 Query: 100 LAAHTPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWYGFFNGDISMAFFPQRYP 159 AA P+ V T+ +VNLRFVIFSAA+ PHF +LP +RR GFFNGD+ +F QRY Sbjct: 115 FAAGMPIWTVLLTSAVVNLRFVIFSAALQPHFSYLPLWRRTVLGFFNGDLHFVYFMQRYT 174 Query: 160 PSTFHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIPESWNIGFAGTLALIAVMIPM 219 + GK GYF + V WQ+ + IGILL S P+SW + AG +ALI VM+ Sbjct: 175 EPGY--APGKEGYFWGMALFNCVTWQVSSIIGILLASLFPDSWGLALAGMMALIPVMVST 232 Query: 220 TSSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAMLADKL 265 +S L V VS +A+L DLPYRLGL++A++ +AA M +D++ Sbjct: 233 INSRSTLLAVAVSSVLALLCFDLPYRLGLVVAVIGAIAAGMASDEM 278 >ref|YP_294789.1| AzlC-like [Ralstonia eutropha JMP134] gb|AAZ59945.1| AzlC-like protein [Ralstonia eutropha JMP134] Length = 276 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 118/225 (52%), Positives = 153/225 (68%), Gaps = 2/225 (0%) Query: 41 EKEAFQEGWRASASTIPAVAAWGVVSGMAMVKSGMTLWQSLAMTLTVYAGSAQFAVLPLL 100 E+ AF EG R A ++PAV +WG+V+G+AM KS MT+ +++ M+L VYAGSAQ AVLPL Sbjct: 20 ERTAFIEGVRFFAPSLPAVFSWGLVTGVAMSKSVMTVPEAIGMSLLVYAGSAQLAVLPLF 79 Query: 101 AAHTPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWYGFFNGDISMAFFPQRYPP 160 AA PL V+ TA IVNLRFVIFSAA+ PHF ++P +RR G FNGD+ +F QRY Sbjct: 80 AAGLPLWTVWLTAAIVNLRFVIFSAALQPHFSYMPLWRRTILGSFNGDLHFVYFMQRY-- 137 Query: 161 STFHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIPESWNIGFAGTLALIAVMIPMT 220 ST AGK GYF + + WQ + IGI+L S P+SW +G AGTLALI VMI Sbjct: 138 STPGYEAGKEGYFWGMALSNFAMWQTSSIIGIVLASLFPDSWGLGLAGTLALIPVMIATI 197 Query: 221 SSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAMLADKL 265 +S L VVVS +A+L DLPYRL L++A++ +AA M +D+L Sbjct: 198 NSRSTLLAVVVSAMLALLCFDLPYRLSLVVAVIGAIAAGMASDEL 242 >ref|YP_582652.1| branched-chain amino acid transport protein [Cupriavidus metallidurans CH34] gb|ABF07383.1| Branched-chain amino acid transport protein [Cupriavidus metallidurans CH34] Length = 266 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 109/226 (48%), Positives = 150/226 (66%), Gaps = 2/226 (0%) Query: 40 IEKEAFQEGWRASASTIPAVAAWGVVSGMAMVKSGMTLWQSLAMTLTVYAGSAQFAVLPL 99 +E++AF EG R A PA+ +WG+V+G+AM KS +T+ +++ M+L VYAGSAQ AVLPL Sbjct: 20 VERDAFLEGARFFARFQPAIFSWGLVTGVAMSKSALTVPEAIGMSLLVYAGSAQLAVLPL 79 Query: 100 LAAHTPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWYGFFNGDISMAFFPQRYP 159 AA P+ V T+ +VNLRFVIFSAA+ PHF +LP +RR GFFNGD+ +F QRY Sbjct: 80 FAAGMPIWTVLLTSAVVNLRFVIFSAALQPHFSYLPLWRRTVLGFFNGDLHFVYFMQRYT 139 Query: 160 PSTFHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIPESWNIGFAGTLALIAVMIPM 219 + GK GYF + V WQ+ + IGILL S P+SW + AG +ALI VM+ Sbjct: 140 EPGY--APGKEGYFWGMALFNCVTWQVSSIIGILLASLFPDSWGLALAGMMALIPVMVST 197 Query: 220 TSSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAMLADKL 265 +S L V VS +A+L DLPYRLGL++A++ +AA M +D++ Sbjct: 198 INSRSTLLAVAVSSVLALLCFDLPYRLGLVVAVIGAIAAGMASDEM 243