BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0778.p (168 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774087.1| Type IV pilin A protein [Herbaspirillum sero... 254 3e-66 ref|NP_518679.1| type 4 fimbrial pilin signal peptide protein [R... 92 2e-17 emb|CAQ56871.1| type 4 fimbrial pilin protein [Ralstonia solanac... 89 3e-16 ref|YP_003746682.1| type 4 fimbrial pilin signal peptide protein... 88 5e-16 ref|YP_001898065.1| type 4 fimbrial pilin signal peptide protein... 86 3e-15 >ref|YP_003774087.1| Type IV pilin A protein [Herbaspirillum seropedicae SmR1] gb|ADJ62179.1| Type IV pilin A protein [Herbaspirillum seropedicae SmR1] Length = 168 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 148/168 (88%), Positives = 154/168 (91%) Query: 1 MKPVVTRRPQQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVT 60 MK VTR QQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVT Sbjct: 1 MKAAVTRSSQQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVT 60 Query: 61 EQISSNNGVFTVAQLGLPAFTPTDNVSKIEVSPMEKRGVGGVITITYSPRVGDGGTLTLT 120 EQISSNNGVFTVAQLGLPAFTPT NV+ I VSPM+ RGVGGVITITYS +VG+GGTLTLT Sbjct: 61 EQISSNNGVFTVAQLGLPAFTPTANVTGISVSPMQPRGVGGVITITYSAQVGEGGTLTLT 120 Query: 121 PTITSGTIQWQCAAKDVKQAATPEGATANTGFVAGTLPAKFAPANCRG 168 PTI SGTIQWQCAA V QA TP+GATANTGFVAGTLPAK+APANCRG Sbjct: 121 PTIASGTIQWQCAAAGVTQAPTPQGATANTGFVAGTLPAKYAPANCRG 168 >ref|NP_518679.1| type 4 fimbrial pilin signal peptide protein [Ralstonia solanacearum GMI1000] emb|CAD14088.1| type 4 fimbrial pilin signal peptide protein [Ralstonia solanacearum GMI1000] Length = 168 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 95/173 (54%), Gaps = 21/173 (12%) Query: 5 VTRRPQQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVTEQIS 64 + +R Q+GFTL+ELM+ +AIVGILA + YQDY RARV+EG +LA K V+E + Sbjct: 7 LNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTVRARVTEGLSLAAQAKALVSENAA 66 Query: 65 SNNGVFTVAQLGLPAFTPTDNVSKIEVSPMEKRGVGGVITITYSPRVGDGGTLTLTPTIT 124 + +V G FTPT NV+ + ++ V G IT+TY+ G GGTL L PT Sbjct: 67 NAQSDLSV---GSSVFTPTKNVANLTIAGTGT--VPGQITVTYTTAAG-GGTLALVPTAA 120 Query: 125 ----------SGTIQWQCAAKDVKQAATPEGATANTGFVAGTLPAKFAPANCR 167 SG I W C A++ QAA+ + +L AK+APA CR Sbjct: 121 GTALPVSSAPSGPIMWTCYAQNKAQAASSVAPSGTM-----SLAAKYAPAECR 168 >emb|CAQ56871.1| type 4 fimbrial pilin protein [Ralstonia solanacearum MolK2] Length = 168 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 94/173 (54%), Gaps = 21/173 (12%) Query: 5 VTRRPQQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVTEQIS 64 + +R Q+GFTL+ELM+ +AIVGILA + YQDY RARV+EG +LA K V+E + Sbjct: 7 LNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTVRARVTEGLSLAAQAKALVSENAA 66 Query: 65 SNNGVFTVAQLGLPAFTPTDNVSKIEVSPMEKRGVGGVITITYSPRVGDGGTLTLTPTIT 124 + +V G FT T NV+ + ++ GV G IT+TY+ G GGTL L PT Sbjct: 67 NAQSDLSV---GSSVFTATKNVANLTIAGTG--GVPGQITVTYTTAAG-GGTLALVPTAA 120 Query: 125 ----------SGTIQWQCAAKDVKQAATPEGATANTGFVAGTLPAKFAPANCR 167 SG I W C A++ AA+ + TL AK+APA CR Sbjct: 121 GSALPISSAPSGPIMWTCYAQNKAAAASSVSPSGTM-----TLAAKYAPAECR 168 >ref|YP_003746682.1| type 4 fimbrial pilin signal peptide protein [Ralstonia solanacearum CFBP2957] emb|CBJ44096.1| Type 4 fimbrial pilin signal peptide protein [Ralstonia solanacearum CFBP2957] Length = 168 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 94/173 (54%), Gaps = 21/173 (12%) Query: 5 VTRRPQQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVTEQIS 64 + +R Q+GFTL+ELM+ +AIVGILA + YQDY RARV+EG +LA K V+E + Sbjct: 7 LNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTVRARVTEGLSLAAQAKALVSENAA 66 Query: 65 SNNGVFTVAQLGLPAFTPTDNVSKIEVSPMEKRGVGGVITITYSPRVGDGGTLTLTPTIT 124 + +V G FT T NV+ +++ + V G IT+TY+ G GGTL L PT Sbjct: 67 NAQTDLSV---GSSVFTATKNVADLKI--LGTGSVPGQITVTYTTAAG-GGTLALVPTAA 120 Query: 125 ----------SGTIQWQCAAKDVKQAATPEGATANTGFVAGTLPAKFAPANCR 167 SG I W C A++ AA+ + TL AK+APA CR Sbjct: 121 GTQLPLASAPSGPIMWTCYAQNKAAAASSVAPSGTM-----TLAAKYAPAECR 168 >ref|YP_001898065.1| type 4 fimbrial pilin signal peptide protein [Ralstonia pickettii 12J] gb|ACD25633.1| type 4 fimbrial pilin signal peptide protein [Ralstonia pickettii 12J] Length = 169 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 93/178 (52%), Gaps = 30/178 (16%) Query: 5 VTRRPQQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVTEQIS 64 + +R Q+GFTL+ELM+ +AIVGILA + YQDY RARV+EG +LA K+ V E + Sbjct: 7 LNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTIRARVTEGLSLAAAAKVLVAENAA 66 Query: 65 SNNGVFTVAQLGLPAFTPTDNVSKIEVSPMEKRGVGGVITITYSPRVGDGG-TLTLTPTI 123 + + G F T NV+ + VS G G ITITY V TLTLTP Sbjct: 67 NAQSDLSA---GSTVFAATKNVNNLVVS-----GTDGHITITYGSAVSTSNPTLTLTPYF 118 Query: 124 TSGT--------------IQWQCAAKDVKQAATPEGATANTGFVAGTLPAKFAPANCR 167 T G+ +QW+CA+ A P G T G+LPAK+APA CR Sbjct: 119 TVGSTNSNLAQSSAPAAPVQWKCAS---ASATAPTGVTVTL----GSLPAKWAPAECR 169