BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0776.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774085.1| succinyl-CoA synthetase subunit alpha [Herba... 538 e-151 ref|YP_004754447.1| succinyl-CoA ligase [ADP-forming] subunit al... 508 e-142 ref|YP_001898062.1| succinyl-CoA synthetase subunit alpha [Ralst... 506 e-141 ref|ZP_07674498.1| succinyl-CoA synthetase, alpha subunit [Ralst... 506 e-141 emb|CBJ39096.1| Succinate-CoA ligase (GDP-forming), alpha subuni... 503 e-140 >ref|YP_003774085.1| succinyl-CoA synthetase subunit alpha [Herbaspirillum seropedicae SmR1] emb|CAM32611.1| Succinyl-CoA synthetase alpha chain protein [Herbaspirillum seropedicae] gb|ADJ62177.1| succinyl-CoA synthetase alpha chain protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 293/293 (100%), Positives = 293/293 (100%) Query: 1 MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60 MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV Sbjct: 1 MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60 Query: 61 TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120 TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS Sbjct: 61 TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120 Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 Query: 181 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA 240 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA Sbjct: 181 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA 240 Query: 241 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL 293 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL Sbjct: 241 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL 293 >ref|YP_004754447.1| succinyl-CoA ligase [ADP-forming] subunit alpha [Collimonas fungivorans Ter331] gb|AEK63624.1| Succinyl-CoA ligase [ADP-forming] alpha chain [Collimonas fungivorans Ter331] Length = 293 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 275/293 (93%), Positives = 283/293 (96%) Query: 1 MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60 MSILINKDTKV+TQGITGKTGQFHTR CRDYANGKNAFVAGVNPKKAGEDFEGIPI+ANV Sbjct: 1 MSILINKDTKVVTQGITGKTGQFHTRGCRDYANGKNAFVAGVNPKKAGEDFEGIPIFANV 60 Query: 61 TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120 +EAK ATGA VSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS Sbjct: 61 SEAKAATGANVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120 Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 Query: 181 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA 240 VGIGGDPINGLKHID+MK FNDDPDTDAVIMIGEIGGPDEANAA WIKDNMKKPVV FIA Sbjct: 181 VGIGGDPINGLKHIDIMKMFNDDPDTDAVIMIGEIGGPDEANAAYWIKDNMKKPVVSFIA 240 Query: 241 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL 293 GVTAPPGKRMGHAGALISGGADTA+AKL IME CGI VT+NPSEM RLLK++L Sbjct: 241 GVTAPPGKRMGHAGALISGGADTAQAKLDIMEACGITVTKNPSEMARLLKAML 293 >ref|YP_001898062.1| succinyl-CoA synthetase subunit alpha [Ralstonia pickettii 12J] gb|ACD25630.1| succinyl-CoA synthetase, alpha subunit [Ralstonia pickettii 12J] Length = 293 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 267/293 (91%), Positives = 279/293 (95%) Query: 1 MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60 MSILINKDTKVITQGITGKTGQFHTR CRDYANGKNAFVAGVNPKKAGEDFEGIPIYA V Sbjct: 1 MSILINKDTKVITQGITGKTGQFHTRGCRDYANGKNAFVAGVNPKKAGEDFEGIPIYATV 60 Query: 61 TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120 +AK TGATVSVIYVPPAGAA AIWEAVEAELDL +CITEGIPVRDM+ +KD+M KAGS Sbjct: 61 KDAKAQTGATVSVIYVPPAGAADAIWEAVEAELDLVVCITEGIPVRDMMMVKDKMRKAGS 120 Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 KTLLLGPNCPGLITPDEIKIGIMPGHIH+KGRIGVVSRSGTLTYEAVGQLTALGLGQSSA Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 Query: 181 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA 240 VGIGGDPINGLKHIDVMK FNDDP+TDAV+MIGEIGGPDEANAA WIKDNMKKPVVGFIA Sbjct: 181 VGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGPDEANAAYWIKDNMKKPVVGFIA 240 Query: 241 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL 293 GVTAPPGKRMGHAGALISGGADTA+AKL IMEECGIK T+NPSEM RLLK++L Sbjct: 241 GVTAPPGKRMGHAGALISGGADTAQAKLDIMEECGIKTTKNPSEMARLLKAML 293 >ref|ZP_07674498.1| succinyl-CoA synthetase, alpha subunit [Ralstonia sp. 5_7_47FAA] gb|EFP67120.1| succinyl-CoA synthetase, alpha subunit [Ralstonia sp. 5_7_47FAA] Length = 293 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 266/293 (90%), Positives = 278/293 (94%) Query: 1 MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60 MSILINKDTKVITQGITGKTGQFHTR CRDYANGKN FVAGVNPKKAGEDFEGIPIYA V Sbjct: 1 MSILINKDTKVITQGITGKTGQFHTRGCRDYANGKNCFVAGVNPKKAGEDFEGIPIYATV 60 Query: 61 TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120 +AK TGATVSVIYVPPAGAA AIWEAVEAELDL +CITEGIPVRDM+ +KD+M KAGS Sbjct: 61 KDAKAQTGATVSVIYVPPAGAADAIWEAVEAELDLVVCITEGIPVRDMMMVKDKMRKAGS 120 Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 KTLLLGPNCPGLITPDEIKIGIMPGHIH+KGRIGVVSRSGTLTYEAVGQLTALGLGQSSA Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 Query: 181 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA 240 VGIGGDPINGLKHIDVMK FNDDP+TDAV+MIGEIGGPDEANAA WIKDNMKKPVVGFIA Sbjct: 181 VGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGPDEANAAYWIKDNMKKPVVGFIA 240 Query: 241 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL 293 GVTAPPGKRMGHAGALISGGADTA+AKL IMEECGIK T+NPSEM RLLK++L Sbjct: 241 GVTAPPGKRMGHAGALISGGADTAQAKLDIMEECGIKTTKNPSEMARLLKAML 293 >emb|CBJ39096.1| Succinate-CoA ligase (GDP-forming), alpha subunit, NAD(P)-binding [Ralstonia solanacearum CMR15] Length = 293 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 266/293 (90%), Positives = 279/293 (95%) Query: 1 MSILINKDTKVITQGITGKTGQFHTRMCRDYANGKNAFVAGVNPKKAGEDFEGIPIYANV 60 MSILINKDTKVITQGITGKTGQFHTR CRDYANGKNAFVAGVNPKKAGEDFEGIPIYA+V Sbjct: 1 MSILINKDTKVITQGITGKTGQFHTRGCRDYANGKNAFVAGVNPKKAGEDFEGIPIYASV 60 Query: 61 TEAKNATGATVSVIYVPPAGAAAAIWEAVEAELDLAICITEGIPVRDMLALKDRMAKAGS 120 +AK TGATVSVIYVPPAGAA AIWEAVEAELDL +CITEGIPVRDM+ +KD+M KAGS Sbjct: 61 KDAKAQTGATVSVIYVPPAGAADAIWEAVEAELDLVVCITEGIPVRDMMMVKDKMRKAGS 120 Query: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 KTLLLGPNCPGLITPDEIKIGIMPGHIH+KGRIGVVSRSGTLTYEAVGQLTALGLGQSSA Sbjct: 121 KTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGVVSRSGTLTYEAVGQLTALGLGQSSA 180 Query: 181 VGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEANAARWIKDNMKKPVVGFIA 240 VGIGGDPINGLKHIDVMK FNDDP+TDAV+MIGEIGGPDEANAA WIKDNMKKPVVGFIA Sbjct: 181 VGIGGDPINGLKHIDVMKMFNDDPETDAVVMIGEIGGPDEANAAHWIKDNMKKPVVGFIA 240 Query: 241 GVTAPPGKRMGHAGALISGGADTAEAKLAIMEECGIKVTRNPSEMGRLLKSVL 293 GVTAPPGKRMGHAGALISGGADTA+AKL IME CGIK T+NPSEM RLLK++L Sbjct: 241 GVTAPPGKRMGHAGALISGGADTAQAKLDIMEACGIKTTKNPSEMARLLKAML 293