BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0775.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774084.1| succinyl-CoA synthetase, beta chain protein ... 665 0.0 ref|YP_004754448.1| succinyl-CoA ligase [ADP-forming] subunit be... 625 e-177 ref|YP_003606113.1| succinyl-CoA synthetase, beta subunit [Burkh... 618 e-175 ref|ZP_02377943.1| succinyl-CoA synthetase subunit beta [Burkhol... 618 e-175 ref|YP_560312.1| succinyl-CoA synthetase subunit beta [Burkholde... 617 e-174 >ref|YP_003774084.1| succinyl-CoA synthetase, beta chain protein [Herbaspirillum seropedicae SmR1] emb|CAM32610.1| Succinyl-CoA synthetase protein, beta chain protein [Herbaspirillum seropedicae] gb|ADJ62176.1| succinyl-CoA synthetase, beta chain protein [Herbaspirillum seropedicae SmR1] Length = 386 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 363/376 (96%), Positives = 369/376 (98%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILRQFGVTVPRGIPC SV++ AA+ LGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRQFGVTVPRGIPCMSVDEVEAAAKELGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSIEQVKEYANQIMGMQLITHQTGAEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120 KVAKSIEQVKEYANQIMGMQL+THQTG EGQKVRRLLIEEGADIKKELYVSLVTDRVSQK Sbjct: 61 KVAKSIEQVKEYANQIMGMQLVTHQTGPEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120 Query: 121 VVLMASSEGGMDIEEVAHSNPEKIHNVIIDPIDGLTDAQADDVAAKIGVPAESIPAARQN 180 VVLMASSEGGMDIEEVAHSNPEKIHNVIIDP+DGLTDAQADDVAAKIGVPA SIPAAR+N Sbjct: 121 VVLMASSEGGMDIEEVAHSNPEKIHNVIIDPVDGLTDAQADDVAAKIGVPAASIPAARKN 180 Query: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE Sbjct: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL Sbjct: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360 Query: 361 LADSGLPIISADSMEE 376 LADSGLPIISADSMEE Sbjct: 361 LADSGLPIISADSMEE 376 >ref|YP_004754448.1| succinyl-CoA ligase [ADP-forming] subunit beta [Collimonas fungivorans Ter331] gb|AEK63625.1| Succinyl-CoA ligase [ADP-forming] beta chain [Collimonas fungivorans Ter331] Length = 388 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 340/385 (88%), Positives = 364/385 (94%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILRQFGVT PRGIPC +V+DAVKAAETLGG VWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRQFGVTTPRGIPCLNVDDAVKAAETLGGSVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSIEQVKEYANQIMGMQLITHQTGAEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120 KVAKS+EQV+EYA+QI+GMQL+THQTG EGQKVRRLLIEEGADIK+ELYVS+VTDRVSQ+ Sbjct: 61 KVAKSLEQVREYASQILGMQLVTHQTGPEGQKVRRLLIEEGADIKQELYVSMVTDRVSQR 120 Query: 121 VVLMASSEGGMDIEEVAHSNPEKIHNVIIDPIDGLTDAQADDVAAKIGVPAESIPAARQN 180 VVLMASSEGGMDIEEVA S+PEKIH V+IDP GLTDA+AD ++ IGVPA SI AR Sbjct: 121 VVLMASSEGGMDIEEVAASHPEKIHQVVIDPATGLTDAEADSISTLIGVPAGSIADARVQ 180 Query: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKAYW+TD SLAEINPLI+TG GKVIALDAKFNFD+NALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAYWDTDCSLAEINPLIVTGSGKVIALDAKFNFDANALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AE+EASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGAT EKVTE Sbjct: 241 AEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATAEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360 AFKIMLKNP LKAILVNIFGGIMRCDVIAEGVI ASKAVSL+VPLVVRMKGTNE++GKK+ Sbjct: 301 AFKIMLKNPGLKAILVNIFGGIMRCDVIAEGVITASKAVSLQVPLVVRMKGTNEEIGKKM 360 Query: 361 LADSGLPIISADSMEEAAQKVVAAA 385 LADSGLPII+ADSMEEAAQKVVAAA Sbjct: 361 LADSGLPIIAADSMEEAAQKVVAAA 385 >ref|YP_003606113.1| succinyl-CoA synthetase, beta subunit [Burkholderia sp. CCGE1002] gb|ADG16602.1| succinyl-CoA synthetase, beta subunit [Burkholderia sp. CCGE1002] Length = 389 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 341/385 (88%), Positives = 359/385 (93%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILR+FGV VPRG P SV+DAVKAAE LGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEELGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSIEQVKEYANQIMGMQLITHQTGAEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120 KVAKS+EQV+EY+NQI+GMQL+THQTG EGQKV RLLIEEGADIKKELYV LV DRVSQK Sbjct: 61 KVAKSLEQVREYSNQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQK 120 Query: 121 VVLMASSEGGMDIEEVAHSNPEKIHNVIIDPIDGLTDAQADDVAAKIGVPAESIPAARQN 180 +V+MASSEGGMD+EEVA PE IH V +DP GL D++ADD+A KIGVP SIP AR Sbjct: 121 IVVMASSEGGMDVEEVAEKTPELIHKVAVDPSTGLKDSEADDLAKKIGVPDASIPQARAI 180 Query: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKA+WETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAFWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AE+EASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE Sbjct: 241 AEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360 AFKIMLKNP L AILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKK+ Sbjct: 301 AFKIMLKNPNLTAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKM 360 Query: 361 LADSGLPIISADSMEEAAQKVVAAA 385 LA+SGLPIISADSMEEAAQKVVAAA Sbjct: 361 LAESGLPIISADSMEEAAQKVVAAA 385 >ref|ZP_02377943.1| succinyl-CoA synthetase subunit beta [Burkholderia ubonensis Bu] Length = 388 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 339/386 (87%), Positives = 362/386 (93%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILR+FGV VPRG P SV++AVK AE LGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEELGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSIEQVKEYANQIMGMQLITHQTGAEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120 KVAKSIEQV+EYANQI+GMQL+THQTG EGQKV RL+IEEGADIK+ELYVSLV DR+SQK Sbjct: 61 KVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRISQK 120 Query: 121 VVLMASSEGGMDIEEVAHSNPEKIHNVIIDPIDGLTDAQADDVAAKIGVPAESIPAARQN 180 +VLM SSEGGMDIEEVA +PE IH VI++P GL DAQADD+AAKIGVPA SIP AR Sbjct: 121 IVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQADDLAAKIGVPAASIPQARAI 180 Query: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKA+WETDASLAEINPL ++GDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAFWETDASLAEINPLNVSGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AE+EASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE Sbjct: 241 AEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360 AFK+MLKNP+LKAILVNIFGGIMRCDVIAEGVIA SKAV+L VPLVVRMKGTNEDLGKK+ Sbjct: 301 AFKLMLKNPDLKAILVNIFGGIMRCDVIAEGVIAGSKAVNLNVPLVVRMKGTNEDLGKKM 360 Query: 361 LADSGLPIISADSMEEAAQKVVAAAK 386 LADSGLPIISADSMEEAAQKVVAAA+ Sbjct: 361 LADSGLPIISADSMEEAAQKVVAAAE 386 >ref|YP_560312.1| succinyl-CoA synthetase subunit beta [Burkholderia xenovorans LB400] sp|Q13UH9|SUCC_BURXL RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit beta; AltName: Full=Succinyl-CoA synthetase subunit beta; Short=SCS-beta gb|ABE32260.1| succinyl-CoA synthetase (ADP-forming) beta subunit [Burkholderia xenovorans LB400] Length = 389 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 341/385 (88%), Positives = 360/385 (93%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILR+FGV VPRG P SV+DAVKAAE LGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEELGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSIEQVKEYANQIMGMQLITHQTGAEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120 KVAKS+EQV+EYANQI+GMQL+THQTG EGQKV RLLIEEGADIKKELYV LV DRVSQK Sbjct: 61 KVAKSLEQVREYANQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQK 120 Query: 121 VVLMASSEGGMDIEEVAHSNPEKIHNVIIDPIDGLTDAQADDVAAKIGVPAESIPAARQN 180 +V+MASSEGGMD+EEVA PE IH + +DP GL DA+AD++A KIGVPA S+P AR Sbjct: 121 IVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEADELATKIGVPAASLPQARAI 180 Query: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKA+WETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAFWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE Sbjct: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360 AFKIMLKNP L AILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKK+ Sbjct: 301 AFKIMLKNPNLTAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKM 360 Query: 361 LADSGLPIISADSMEEAAQKVVAAA 385 LA+SGLPII+ADSMEEAAQKVVAAA Sbjct: 361 LAESGLPIIAADSMEEAAQKVVAAA 385