BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0774.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774083.1| RecA-regulatory protein [Herbaspirillum sero...   223   5e-57
ref|YP_004754450.1| regulatory protein recX [Collimonas fungivor...   147   4e-34
ref|YP_001354550.1| RecX regulatory protein [Janthinobacterium s...   140   5e-32
ref|YP_001100870.1| RecX family regulatory protein [Herminiimona...   138   2e-31
emb|CCA88932.1| recombination regulator RecX (Modulates recA act...   128   3e-28

>ref|YP_003774083.1| RecA-regulatory protein [Herbaspirillum seropedicae SmR1]
 sp|O86082|RECX_HERSE RecName: Full=Regulatory protein recX
 gb|AAC34592.2| putative regulatory protein RecX [Herbaspirillum seropedicae]
 gb|ADJ62175.1| RecA-regulatory protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  223 bits (569), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 139/154 (90%), Positives = 147/154 (95%)

Query: 1   MPRPPISLKARALKYLSSREHSRQELARKLAPYAQEGDDIEALLQWLEQSRFLSEERFSE 60
           MPRPPISLKARALKYLSSREHSR ELARKLAPYAQEGDDIEALLQWLEQSRFLS+ERFSE
Sbjct: 1   MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60

Query: 61  SLVHRRSARYGNQRIFSELHGHGIEGEAIAELKADLAAGEGERAAQVLRRKYAAPPEDAE 120
           SLVHRR+ARYGNQRI SELHGHGIEGEAIA+LKADLAAGE ERAAQVLRRK+ APP DAE
Sbjct: 61  SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120

Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWADDEESA 154
           TRAKQMRFLQQRGFSHRSIREAFQTAW D+++ +
Sbjct: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWLDEDDPS 154


>ref|YP_004754450.1| regulatory protein recX [Collimonas fungivorans Ter331]
 gb|AEK63627.1| Regulatory protein recX [Collimonas fungivorans Ter331]
          Length = 156

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 94/144 (65%), Positives = 114/144 (79%)

Query: 1   MPRPPISLKARALKYLSSREHSRQELARKLAPYAQEGDDIEALLQWLEQSRFLSEERFSE 60
           M +P ISLKARAL+YLS+REHSR ELARKLA YAQEGDDIEALL  LE ++ LS+ RFSE
Sbjct: 1   MAKPQISLKARALRYLSAREHSRLELARKLARYAQEGDDIEALLDTLEAAKLLSQARFSE 60

Query: 61  SLVHRRSARYGNQRIFSELHGHGIEGEAIAELKADLAAGEGERAAQVLRRKYAAPPEDAE 120
           SL+HRR+ RYGN RI SEL  HGI+ +A+ ++KA LA+GE  RA +V R+K+   P  AE
Sbjct: 61  SLIHRRAHRYGNSRILSELQSHGIDADALVDIKAGLASGEIARAREVWRKKFKQVPASAE 120

Query: 121 TRAKQMRFLQQRGFSHRSIREAFQ 144
            RAKQMRFL QRGFSHR+I+ A +
Sbjct: 121 ERAKQMRFLLQRGFSHRAIQAAVK 144


>ref|YP_001354550.1| RecX regulatory protein [Janthinobacterium sp. Marseille]
 sp|A6T203|RECX_JANMA RecName: Full=Regulatory protein recX
 gb|ABR88295.1| RecX regulatory protein [Janthinobacterium sp. Marseille]
          Length = 151

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 89/151 (58%), Positives = 115/151 (76%)

Query: 1   MPRPPISLKARALKYLSSREHSRQELARKLAPYAQEGDDIEALLQWLEQSRFLSEERFSE 60
           M +  +SLKARAL+YLS+REHSRQEL RKLA +AQEGDD+EALL  LE ++FLS+ RFSE
Sbjct: 1   MAKLQVSLKARALRYLSAREHSRQELGRKLARHAQEGDDVEALLDTLEAAKFLSQSRFSE 60

Query: 61  SLVHRRSARYGNQRIFSELHGHGIEGEAIAELKADLAAGEGERAAQVLRRKYAAPPEDAE 120
           SLVHRR+AR+GN RI SEL  HGI+ +++ ++KA+L + E  RA  V  RK+     + E
Sbjct: 61  SLVHRRAARFGNSRILSELKSHGIDPDSLTDIKANLESDEFARARAVWERKFGTVATNQE 120

Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWADDE 151
            RAKQMRFL QRGFSHR+I+ A + A  D++
Sbjct: 121 ERAKQMRFLMQRGFSHRAIQAAMRAAGKDED 151


>ref|YP_001100870.1| RecX family regulatory protein [Herminiimonas arsenicoxydans]
 sp|A4G8B2|RECX_HERAR RecName: Full=Regulatory protein recX
 emb|CAL62749.1| Regulatory protein RecX [Herminiimonas arsenicoxydans]
          Length = 151

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/144 (63%), Positives = 110/144 (76%)

Query: 1   MPRPPISLKARALKYLSSREHSRQELARKLAPYAQEGDDIEALLQWLEQSRFLSEERFSE 60
           M +  +SLKARAL+YLS+REHSRQELARKLA YAQEGDDIEALL  LE + F+SE RFSE
Sbjct: 1   MAKLQVSLKARALRYLSAREHSRQELARKLARYAQEGDDIEALLDTLEAANFMSEARFSE 60

Query: 61  SLVHRRSARYGNQRIFSELHGHGIEGEAIAELKADLAAGEGERAAQVLRRKYAAPPEDAE 120
           SLV+RR+AR+GN RI SEL  H I+ +++ E+KA LA  E  RA +V  RK+     DA 
Sbjct: 61  SLVNRRAARFGNSRILSELKSHNIDPDSLTEIKAALAQDEVARAREVWTRKFGVAASDAN 120

Query: 121 TRAKQMRFLQQRGFSHRSIREAFQ 144
            RAKQMRFL QRGFSHR+I+ A +
Sbjct: 121 GRAKQMRFLLQRGFSHRAIQAAMR 144


>emb|CCA88932.1| recombination regulator RecX (Modulates recA activity) [Ralstonia
           syzygii R24]
          Length = 159

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 97/146 (66%)

Query: 1   MPRPPISLKARALKYLSSREHSRQELARKLAPYAQEGDDIEALLQWLEQSRFLSEERFSE 60
           +PR P+SLKARAL YLS REHSR EL RKLAP+A+  D++EALL WLE   +LS  RF+E
Sbjct: 3   LPRQPLSLKARALGYLSRREHSRAELRRKLAPHAESADEVEALLDWLEGENWLSNARFAE 62

Query: 61  SLVHRRSARYGNQRIFSELHGHGIEGEAIAELKADLAAGEGERAAQVLRRKYAAPPEDAE 120
           S+VHRR+ RYG  R+  EL  H +  EA+ E+KA L A E  RA  V  R++  PP D  
Sbjct: 63  SVVHRRAGRYGTARLMQELKTHELGDEALGEVKAQLQASETARAKAVWARRFGRPPADMV 122

Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTA 146
            RAKQ+RF+  RGFS   +    Q A
Sbjct: 123 ERAKQVRFMMARGFSRAVVSRIIQGA 148