BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0771.p (542 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774081.1| transcription regulator protein [Herbaspiril... 944 0.0 emb|CAL61593.2| Putative response regulator receiver protein [He... 568 e-160 ref|YP_001353651.1| hypothetical protein mma_1961 [Janthinobacte... 561 e-157 ref|YP_001099720.1| putative response receiver protein [Herminii... 471 e-130 ref|YP_003523827.1| response regulator receiver protein [Siderox... 341 2e-91 >ref|YP_003774081.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 944 bits (2441), Expect = 0.0, Method: Composition-based stats. Identities = 513/542 (94%), Positives = 532/542 (98%) Query: 1 MSLVPFSHISALRCLVIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGTYDLI 60 MSLVPFSHISALR L+IDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSG YDLI Sbjct: 1 MSLVPFSHISALRSLIIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGNYDLI 60 Query: 61 ICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLT 120 ICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLT Sbjct: 61 ICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLT 120 Query: 121 ASRIAERVDRLLEKQHAMLPVTEKMKRKDITGAIIECDNVLKSAPKWIVEIMKTKGTLLI 180 ASRIAERVDRLLEKQHAMLPVTEKMKRKDI+GAI ECDNVLK+APKWIVEIMKTKGTLLI Sbjct: 121 ASRIAERVDRLLEKQHAMLPVTEKMKRKDISGAIAECDNVLKAAPKWIVEIMKTKGTLLI 180 Query: 181 EQRRIDEAREVYKQALAMRDDLVWAKIGLARCNIVAGQMDDARVIVQDVLAQNKQFIAAY 240 EQRR+DEAREVYKQAL MRDDLVWAKIGLARCNIVAGQMDDAR IV+DVLAQNKQFIAAY Sbjct: 181 EQRRVDEAREVYKQALGMRDDLVWAKIGLARCNIVAGQMDDARAIVEDVLAQNKQFIAAY 240 Query: 241 DLMAQIDEAQGNQEGALEALTKSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHT 300 DL+AQIDEAQGNQEGALEALT+SSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHT Sbjct: 241 DLLAQIDEAQGNQEGALEALTRSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHT 300 Query: 301 KGSLTAQPTDLLSLAQVHIDSGDPDAALRLLESAPRRYEESNIFVSAQAAVQAQAYVQLG 360 KGSLTAQPTDLLSLAQVHIDSGD DAALRLLESAPRRYEES +F+SAQAAVQAQAYVQLG Sbjct: 301 KGSLTAQPTDLLSLAQVHIDSGDADAALRLLESAPRRYEESKLFISAQAAVQAQAYVQLG 360 Query: 361 DTISAQQAFETARQAAGKEASDTATLALAKAAFSMGKDEEGAKLIAEAVKSDHENKTLQM 420 DTISAQQAFETARQAAG+E SD ATLALAKAAFSMG+DEEG+KLIA+AVKSDHENKTL M Sbjct: 361 DTISAQQAFETARQAAGEETSDMATLALAKAAFSMGRDEEGSKLIADAVKSDHENKTLLM 420 Query: 421 LARKVLADTGRANLAEELIDGAVKHCMSIIAEANALMRSAKPDESLARLEEALASMPENT 480 LARKVLADTGRANLA+EL+DGAVKHCMS+IAEANALMRSAKPDESLA+LEEALASMPENT Sbjct: 421 LARKVLADTGRANLADELVDGAVKHCMSVIAEANALMRSAKPDESLAKLEEALASMPENT 480 Query: 481 GVLLAAAQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLTKVAP 540 GVLLA+AQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTL+KVAP Sbjct: 481 GVLLASAQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLSKVAP 540 Query: 541 KS 542 KS Sbjct: 541 KS 542 >emb|CAL61593.2| Putative response regulator receiver protein [Herminiimonas arsenicoxydans] Length = 542 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 315/542 (58%), Positives = 414/542 (76%) Query: 1 MSLVPFSHISALRCLVIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGTYDLI 60 M+ + S ++ LR LV+DDMP MRQNIR LGQLG+ +VDQA TP++AI++++S +YD+I Sbjct: 1 MATILNSRLAKLRALVVDDMPAMRQNIRSQLGQLGIEQVDQAGTPNDAIKYIRSTSYDVI 60 Query: 61 ICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLT 120 ICDYNLNKE+NGQQ+LEF R+Q +LSPT MF MVTAES Y+ VASAAEFQPDAYM+KPLT Sbjct: 61 ICDYNLNKETNGQQMLEFLRSQKLLSPTAMFFMVTAESSYDSVASAAEFQPDAYMVKPLT 120 Query: 121 ASRIAERVDRLLEKQHAMLPVTEKMKRKDITGAIIECDNVLKSAPKWIVEIMKTKGTLLI 180 +IA+R++RLL+++ A+ P+T+++++KD+ GAI ECD VLK PKWIV+I+KTK + Sbjct: 121 GGKIADRIERLLDRKQALKPITDRLQKKDLAGAIAECDRVLKIEPKWIVDILKTKAGAAL 180 Query: 181 EQRRIDEAREVYKQALAMRDDLVWAKIGLARCNIVAGQMDDARVIVQDVLAQNKQFIAAY 240 E + DEAR Y QAL +R DLVWAK+GLARC+ G++++A++IVQ VL +N Q++ AY Sbjct: 181 ELGQNDEARRSYLQALGLRQDLVWAKLGLARCDQAEGRLEEAKIIVQGVLEKNAQYVDAY 240 Query: 241 DLMAQIDEAQGNQEGALEALTKSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHT 300 DL+AQI E++G + LEAL KS +IPSARRSR+VGD AYR G L+QAR AYDK L HT Sbjct: 241 DLLAQIAESRGEDQQVLEALNKSYNVIPSARRSRMVGDAAYRVGDLEQARSAYDKALNHT 300 Query: 301 KGSLTAQPTDLLSLAQVHIDSGDPDAALRLLESAPRRYEESNIFVSAQAAVQAQAYVQLG 360 +GSLTAQ +D LSLAQVH+D G AL +L A + + E F S QA + AQA+ LG Sbjct: 301 RGSLTAQASDALSLAQVHVDIGQAGNALEILSVAAQDHHEDPGFCSRQAIIAAQAFAALG 360 Query: 361 DTISAQQAFETARQAAGKEASDTATLALAKAAFSMGKDEEGAKLIAEAVKSDHENKTLQM 420 D S + AFE+A++ A +DT TL LAKAAF +G EEGA+++A+A+KSDHEN L Sbjct: 361 DMASGKAAFESAKELAADIRADTNTLTLAKAAFCLGMHEEGARIMAKAIKSDHENARLVA 420 Query: 421 LARKVLADTGRANLAEELIDGAVKHCMSIIAEANALMRSAKPDESLARLEEALASMPENT 480 LARKVL DTG L E+++D A+ I+ EA LMR+ + DESLA+LEEAL + P+NT Sbjct: 421 LARKVLKDTGNETLVEKIVDDAISAGALIVDEATRLMRNGQFDESLAKLEEALDATPDNT 480 Query: 481 GVLLAAAQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLTKVAP 540 GVLLAAAQLHLLWMSQ+G + YV+RV YLA LD L+P ++RVAKM++FLR+TL KVA Sbjct: 481 GVLLAAAQLHLLWMSQKGLDRSYVRRVNGYLAQLDGLMPNSERVAKMYRFLRETLVKVAK 540 Query: 541 KS 542 ++ Sbjct: 541 EA 542 >ref|YP_001353651.1| hypothetical protein mma_1961 [Janthinobacterium sp. Marseille] gb|ABR91293.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 542 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 303/539 (56%), Positives = 418/539 (77%) Query: 1 MSLVPFSHISALRCLVIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGTYDLI 60 M+ + S ++ LR LV+DDMPTMRQNIR LGQLG+ +VDQ+ATP++AI+ +++ YD+I Sbjct: 1 MATILNSRLAKLRALVVDDMPTMRQNIRTQLGQLGIEQVDQSATPNDAIKRIRNTNYDVI 60 Query: 61 ICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLT 120 +CDYNLNKE+NGQQ+LE+ R+Q +LSPT MF MVTAES Y+ VASAAEFQPDAYM+KPLT Sbjct: 61 VCDYNLNKETNGQQVLEYLRSQKLLSPTAMFFMVTAESSYDSVASAAEFQPDAYMVKPLT 120 Query: 121 ASRIAERVDRLLEKQHAMLPVTEKMKRKDITGAIIECDNVLKSAPKWIVEIMKTKGTLLI 180 +IA+R++RLL++Q A+ P+T++++ KD++GAI ECD VL + PKWIV+I+K KG+ + Sbjct: 121 GGKIADRLERLLDRQQALKPITDRLQMKDLSGAITECDTVLVAEPKWIVDILKIKGSSAL 180 Query: 181 EQRRIDEAREVYKQALAMRDDLVWAKIGLARCNIVAGQMDDARVIVQDVLAQNKQFIAAY 240 E I++AR Y++AL++R DLVWAK+GLARC+ AG++D+A+ V +VL N QF+ AY Sbjct: 181 ELGNINDARATYQKALSLRSDLVWAKLGLARCDQAAGRLDEAKKTVSEVLEANAQFVDAY 240 Query: 241 DLMAQIDEAQGNQEGALEALTKSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHT 300 DL+AQI EAQGN+E L+A KS ++IPSARRSRL+GD AYR G+L+QAR+A++K L HT Sbjct: 241 DLLAQIAEAQGNEEAVLDAFNKSYDVIPSARRSRLMGDAAYRVGNLEQARQAFNKALTHT 300 Query: 301 KGSLTAQPTDLLSLAQVHIDSGDPDAALRLLESAPRRYEESNIFVSAQAAVQAQAYVQLG 360 +GSLTAQ +D LSLAQV +D GD AL +L +A + +++ F + QA + AQA+ +LG Sbjct: 301 RGSLTAQASDALSLAQVQVDIGDAADALNVLSAAAQDHQDDPYFAARQATIAAQAFARLG 360 Query: 361 DTISAQQAFETARQAAGKEASDTATLALAKAAFSMGKDEEGAKLIAEAVKSDHENKTLQM 420 D SAQ AF +A++ A +D TL LAKAAF +G +EEGA+++A+A+K+DHEN L Sbjct: 361 DMNSAQAAFASAKELADGIRADIHTLTLAKAAFCVGLEEEGARIVAKAIKADHENIRLVA 420 Query: 421 LARKVLADTGRANLAEELIDGAVKHCMSIIAEANALMRSAKPDESLARLEEALASMPENT 480 AR+VL DTG L E++++ ++ I+ +A LMR+ + DESLA+LEEAL + PENT Sbjct: 421 FARRVLQDTGNEALIEKVVEESISEGALIVEQATQLMRAGQFDESLAKLEEALTATPENT 480 Query: 481 GVLLAAAQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLTKVA 539 GVLLAAAQLHLLWMSQ+G + YV+RV YLA LD L+P ++RVAKM++FLR+TL K + Sbjct: 481 GVLLAAAQLHLLWMSQKGLDRNYVERVNAYLAQLDVLMPNSERVAKMYRFLRETLVKAS 539 >ref|YP_001099720.1| putative response receiver protein [Herminiimonas arsenicoxydans] Length = 468 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 269/468 (57%), Positives = 352/468 (75%) Query: 75 LLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAERVDRLLEK 134 +LEF R+Q +LSPT MF MVTAES Y+ VASAAEFQPDAYM+KPLT +IA+R++RLL++ Sbjct: 1 MLEFLRSQKLLSPTAMFFMVTAESSYDSVASAAEFQPDAYMVKPLTGGKIADRIERLLDR 60 Query: 135 QHAMLPVTEKMKRKDITGAIIECDNVLKSAPKWIVEIMKTKGTLLIEQRRIDEAREVYKQ 194 + A+ P+T+++++KD+ GAI ECD VLK PKWIV+I+KTK +E + DEAR Y Q Sbjct: 61 KQALKPITDRLQKKDLAGAIAECDRVLKIEPKWIVDILKTKAGAALELGQNDEARRSYLQ 120 Query: 195 ALAMRDDLVWAKIGLARCNIVAGQMDDARVIVQDVLAQNKQFIAAYDLMAQIDEAQGNQE 254 AL +R DLVWAK+GLARC+ G++++A++IVQ VL +N Q++ AYDL+AQI E++G + Sbjct: 121 ALGLRQDLVWAKLGLARCDQAEGRLEEAKIIVQGVLEKNAQYVDAYDLLAQIAESRGEDQ 180 Query: 255 GALEALTKSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHTKGSLTAQPTDLLSL 314 LEAL KS +IPSARRSR+VGD AYR G L+QAR AYDK L HT+GSLTAQ +D LSL Sbjct: 181 QVLEALNKSYNVIPSARRSRMVGDAAYRVGDLEQARSAYDKALNHTRGSLTAQASDALSL 240 Query: 315 AQVHIDSGDPDAALRLLESAPRRYEESNIFVSAQAAVQAQAYVQLGDTISAQQAFETARQ 374 AQVH+D G AL +L A + + E F S QA + AQA+ LGD S + AFE+A++ Sbjct: 241 AQVHVDIGQAGNALEILSVAAQDHHEDPGFCSRQAIIAAQAFAALGDMASGKAAFESAKE 300 Query: 375 AAGKEASDTATLALAKAAFSMGKDEEGAKLIAEAVKSDHENKTLQMLARKVLADTGRANL 434 A +DT TL LAKAAF +G EEGA+++A+A+KSDHEN L LARKVL DTG L Sbjct: 301 LAADIRADTNTLTLAKAAFCLGMHEEGARIMAKAIKSDHENARLVALARKVLKDTGNETL 360 Query: 435 AEELIDGAVKHCMSIIAEANALMRSAKPDESLARLEEALASMPENTGVLLAAAQLHLLWM 494 E+++D A+ I+ EA LMR+ + DESLA+LEEAL + P+NTGVLLAAAQLHLLWM Sbjct: 361 VEKIVDDAISAGALIVDEATRLMRNGQFDESLAKLEEALDATPDNTGVLLAAAQLHLLWM 420 Query: 495 SQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLTKVAPKS 542 SQ+G + YV+RV YLA LD L+P ++RVAKM++FLR+TL KVA ++ Sbjct: 421 SQKGLDRSYVRRVNGYLAQLDGLMPNSERVAKMYRFLRETLVKVAKEA 468 >ref|YP_003523827.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] gb|ADE11440.1| response regulator receiver protein [Sideroxydans lithotrophicus ES-1] Length = 559 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 191/528 (36%), Positives = 319/528 (60%), Gaps = 4/528 (0%) Query: 12 LRCLVIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGTYDLIICDYNLNKESN 71 L LVIDD+ MR +R L + + + A EA+ +++ YDLI+CDYNLNK ++ Sbjct: 31 LSALVIDDIGAMRHALRSQLQWMEMNSIKCVADAQEALGQIENNRYDLILCDYNLNKATS 90 Query: 72 GQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASRIAERVDRL 131 GQ LE+ R +++LS +F+MVTAE+ Y VA+AAEF PD Y+LKP ++ R++RL Sbjct: 91 GQHFLEYLRHEHLLSAKTIFVMVTAEAEYAFVANAAEFAPDDYILKPCPEKKLRARLERL 150 Query: 132 LEKQHAMLPVTEKMKRKDITGAIIECDNV--LKSAPKWIVEIMKTKGTLLIEQRRIDEAR 189 ++++ +LP M K+ + ECD + L + +W++ +K K L+ + Sbjct: 151 FDRRNFLLPALTAMDDKNYLLVVSECDRLMALVTNERWLMAALKLKAEALLALNDTTDLL 210 Query: 190 EVYKQALAMRDDLVWAKIGLARCNIVAGQMDDARVIVQDVLAQNKQFIAAYDLMAQIDEA 249 + Y+QALAMRD++ W KIG+AR ++ ++D A + + ++A N ++AAY+L+A+I Sbjct: 211 KTYEQALAMRDNVPWVKIGIARARMLLNEVDAAEEMAKQIVADNPSYVAAYELLAEIRRM 270 Query: 250 QGNQEGALEALTKSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHTKGSLTAQPT 309 Q ++EGA + + +S++I+P+A+R R + A+ G LD+A++ + ++ GS+T +P Sbjct: 271 QKDEEGAYQLMEQSAKILPTAKRFRSNAESAFLLGKLDEAKKYSESAIRLASGSITERPD 330 Query: 310 DLLSLAQVHIDSGDPDAALRLLESAPRRYEESNIFVSAQAAVQAQAYVQLGDTISAQQAF 369 D LSLAQ+ D GDP A+ LE + R++EE F ++ A+ AQAY GD +A++ Sbjct: 331 DYLSLAQIQTDLGDPQGAIHTLEKSARKFEEKGSFGISKNAILAQAYFDAGDKAAAKRLL 390 Query: 370 ETARQAAGKEASDTATLALAKAAFSMGKDEEGAKLIAEAVKSDH-ENKTLQMLARKVLAD 428 E +++ E+S +A +L KAAF G G K++ +AV+S E + + K + D Sbjct: 391 ERSQRLLTAESSSSAMNSLGKAAFKTGDSVLGLKMLTQAVQSSGLERERIARHVTKSMID 450 Query: 429 TGRANLAEELIDGAVKHCMSIIAEANALMRSAKPDESLARLEEALASMPENTGVLLAAAQ 488 TG+ + +E+ID + ++++ EA M A+ D + ++ +ALA +N L AAAQ Sbjct: 451 TGQHDKVDEVIDAGQRRVLALVEEARKAMHVAQFDAAYRKVLDALAIQSDNIEALFAAAQ 510 Query: 489 LHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLT 536 LHLLW+ Q G + + +R + YLA LD+L+P N++V ++F D LT Sbjct: 511 LHLLWLKQGGMDADVQERAKSYLAILDKLVPHNEKVMSFYRFY-DQLT 557