BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0770.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774080.1| sensor histidine kinase [Herbaspirillum sero... 341 4e-92 ref|YP_001099719.1| putative sensor protein [Herminiimonas arsen... 216 2e-54 ref|YP_001353652.1| two-component sensor histidine kinase [Janth... 199 2e-49 ref|YP_003847552.1| histidine kinase [Gallionella capsiferriform... 108 4e-22 ref|YP_003523826.1| histidine kinase [Sideroxydans lithotrophicu... 105 4e-21 >ref|YP_003774080.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ62172.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 202 Score = 341 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 181/202 (89%), Positives = 190/202 (94%), Gaps = 1/202 (0%) Query: 1 MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVPRVQQAHVTCLALQEKLIAFLTLYKADSQ 60 MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVPRVQQAHVTCLALQEKLIAFLTLYKADSQ Sbjct: 1 MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVPRVQQAHVTCLALQEKLIAFLTLYKADSQ 60 Query: 61 GLRAQVEAVSPLDFLDALVREHGVSR-SNDIALQVDETDMPVIGFFDEHLVALALEAALQ 119 GLRAQVEAVSP DFL +LVRE V+R + L VDETDMP+IGFFDEHLVALALEAALQ Sbjct: 61 GLRAQVEAVSPQDFLQSLVREQAVARVQGALTLVVDETDMPIIGFFDEHLVALALEAALQ 120 Query: 120 NASRFARSQIALGCRKHPEGGVIFTVRDDGPGIGTQEKKPSTGLGMDLCNAIATAHNKET 179 NASRFAR++IALGCR HPEGGV+F+VRDDGPGIGTQEKKPSTGLGMDLCNAIATAHNKET Sbjct: 121 NASRFARTRIALGCRNHPEGGVVFSVRDDGPGIGTQEKKPSTGLGMDLCNAIATAHNKET 180 Query: 180 RHGEARLSNHPDGGALFELCLP 201 R GEARLSNHPDGGA+FELCLP Sbjct: 181 RQGEARLSNHPDGGAVFELCLP 202 >ref|YP_001099719.1| putative sensor protein [Herminiimonas arsenicoxydans] emb|CAL61592.1| putative Signal transduction histidine kinase sensor protein [Herminiimonas arsenicoxydans] Length = 203 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 115/203 (56%), Positives = 147/203 (72%), Gaps = 4/203 (1%) Query: 1 MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVPRVQ--QAHVTCLALQEKLIAFLTLYKAD 58 M+P+L+AI++HD+KN LGVLEG L L+ D+ R Q QAH +C+AL+EK+IAFLTLYKA Sbjct: 3 MNPQLSAIVVHDLKNELGVLEGRLATLTVDLDREQALQAHASCIALREKMIAFLTLYKAT 62 Query: 59 SQGLRAQVEAVSPLDFLDALVREHGVSRSNDIALQVDETDMPVIGFFDEHLVALALEAAL 118 QGL ++EAV P DFL L+R H SR ++ L +D +P I FFDEHL+ LA+ AAL Sbjct: 63 EQGLNPRIEAVHPDDFLRELIRNHVHSRP-ELTLTMDSDALPAIAFFDEHLLGLAMNAAL 121 Query: 119 QNASRFARSQIALGCRKHPEGGVIFTVRDDGPGIGTQEKKPSTGLGMDLCNAIATAHNKE 178 QNA+RFA+S I + CRK G +IFTVRDDGPG+ E++ STGLGM LC AIA AH + Sbjct: 122 QNATRFAKSSIVVACRK-TAGEIIFTVRDDGPGLDATEEQASTGLGMALCAAIARAHCSD 180 Query: 179 TRHGEARLSNHPDGGALFELCLP 201 ++G A LS DGGALF + LP Sbjct: 181 DKYGSAHLSTCADGGALFSMRLP 203 >ref|YP_001353652.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] gb|ABR90819.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 199 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 113/203 (55%), Positives = 147/203 (72%), Gaps = 6/203 (2%) Query: 1 MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVP--RVQQAHVTCLALQEKLIAFLTLYKAD 58 MDP+LAAII+HD+KN+LG LEGEL L++D+ + +AH CLAL++K+I FLTLYKA Sbjct: 1 MDPQLAAIIVHDLKNALGELEGELAALTEDLDHGKASEAHHHCLALRDKMIGFLTLYKAS 60 Query: 59 SQGLRAQVEAVSPLDFLDALVREHGVSRSNDIALQVDETDMPVIGFFDEHLVALALEAAL 118 +QGL+ +EAV+P FL L+R H + I + +D DMP I FFDEHL+ LAL+AAL Sbjct: 61 TQGLQPHIEAVNPEGFLKGLIRAHNKA---GITITLDTDDMPAIAFFDEHLLGLALDAAL 117 Query: 119 QNASRFARSQIALGCRKHPEGGVIFTVRDDGPGIGTQEKKPSTGLGMDLCNAIATAHNKE 178 QNA RFA+S I +GC+ + +FT++DDGPG+GT E+KPSTG+GM L AIA AH+ E Sbjct: 118 QNALRFAKSSIVVGCKTIADE-TVFTIQDDGPGLGTPEEKPSTGMGMALSGAIAAAHHNE 176 Query: 179 TRHGEARLSNHPDGGALFELCLP 201 R G RL + P GGALF L LP Sbjct: 177 LREGRVRLHSLPHGGALFCLYLP 199 >ref|YP_003847552.1| histidine kinase [Gallionella capsiferriformans ES-2] gb|ADL55788.1| histidine kinase [Gallionella capsiferriformans ES-2] Length = 221 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 126/222 (56%), Gaps = 27/222 (12%) Query: 1 MDPKLAAIIIHDIKNSLGVLEGELRRL--SDDVPRVQ-QAHVTCLALQEKLIAFLTLYKA 57 M+ L+A+++HDIKN+L +LE +L +L ++ P +A+ C+ L+ +LI+FLTLYK Sbjct: 1 MEKTLSALVVHDIKNALALLEIDLEQLIHRENAPTEGLRAYRRCVDLKSRLISFLTLYKH 60 Query: 58 DSQGLRAQVEAVSPLDFLDALVR--EHGVS----RSNDIALQVDETDMPV----IGFFDE 107 D GL+ + V L+F++ LVR + G++ + I + +D M + + DE Sbjct: 61 DQSGLQPLRQEVVLLEFIEDLVRNSQSGMAAESHHGHKITVSIDYEKMKMGSMATAWLDE 120 Query: 108 HLVALALEAALQNASRFARSQIALGCRKHPEGGVIFTVRDDGPGI---------GTQEKK 158 +LV LA+E+A+ NA R+ ++ + + P+ +I V+DDG G+ ++ Sbjct: 121 NLVELAMESAINNAIRYTHHRVGVWVEQTPD-ALILNVQDDGVGVGVVGELVQRNVPDQS 179 Query: 159 PSTGLGMDLCNAIATAHNKETRHGEARLSNHPDGGALFELCL 200 STGLG+ LC A+A AH GE RL N GGALF + L Sbjct: 180 SSTGLGLALCKAVAEAHGG----GEVRLGNVAGGGALFSMTL 217 >ref|YP_003523826.1| histidine kinase [Sideroxydans lithotrophicus ES-1] gb|ADE11439.1| histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 30/223 (13%) Query: 1 MDPKLAAIIIHDIKNSLGVLEGELRRLSD--DVP-RVQQAHVTCLALQEKLIAFLTLYKA 57 M L+A++IHDIKNSL +LE +L +L+ D P ++A+ C+ L+ +LI+FLTLYK Sbjct: 1 MQQALSALVIHDIKNSLALLEADLEQLNHRADAPDEARKAYQRCIELKSRLISFLTLYKH 60 Query: 58 DSQGLRAQVEAVSPLDFL-DALVREHGVSRSND----IALQVDETDMPV--------IGF 104 + L + + +FL D + V+ ++ IA+ VDE + + + Sbjct: 61 EQGRLLPNLGEIDLAEFLEDMIAGSQSVTMASRHGHAIAVNVDEDRIRIATEVRHKGVAS 120 Query: 105 FDEHLVALALEAALQNASRFARSQIALGCRKHPEGGVIFTVRDDGPGIG---------TQ 155 DE+LV LALE+AL NA R+A S++ + + + + F V DDGPG T Sbjct: 121 LDEYLVDLALESALNNAVRYAASRVDVWFEQDAD-RLTFFVFDDGPGPAHTGHAEAATTS 179 Query: 156 EKKPSTGLGMDLCNAIATAHNKETRHGEARLSNHPDGGALFEL 198 K STGLG+ LC + AH G+ L++ P GGALF + Sbjct: 180 AKPASTGLGLSLCKTVTEAHGG----GKVTLADAPGGGALFTM 218