BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0766.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporte... 416 e-114 ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate trans... 291 7e-77 ref|YP_789699.1| ABC transporter permease [Pseudomonas aeruginos... 275 8e-72 ref|YP_002439216.1| putative permease of ABC transporter [Pseudo... 275 8e-72 ref|YP_001347063.1| ABC transporter permease [Pseudomonas aerugi... 275 9e-72 >ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62169.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 248/267 (92%), Positives = 256/267 (95%) Query: 25 RRGWPHDDGYRPGRFTGWIVPLLFLLAVEAGARLDWIPARLLPPPSELAHTLWTLAQRGE 84 RRGWPHDD YRPGRFTGWIVPL FLL VEAGARL+ IPARLLPPPSELAHTLW+LAQRGE Sbjct: 12 RRGWPHDDAYRPGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGE 71 Query: 85 LLPHIAASLARVASGFVIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLL 144 LLPHIAASLARVA+GFVIGS LAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLL Sbjct: 72 LLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLL 131 Query: 145 LWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTSSGLSTGELIRHILLPAS 204 LWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGT+SGL+T LI HILLPAS Sbjct: 132 LWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPAS 191 Query: 205 LPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLSAILILALLGKV 264 LPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVL+AILILALLGK+ Sbjct: 192 LPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKL 251 Query: 265 SDSLLRAVEQKSLGWREARWQSSQKIS 291 SD LLRAVEQKSLGWREAR QSSQ+ S Sbjct: 252 SDGLLRAVEQKSLGWREARRQSSQQTS 278 >ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89846.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 161/242 (66%), Positives = 197/242 (81%), Gaps = 1/242 (0%) Query: 41 GWIVPLLFLLAVEAGARLDWIPARLLPPPSELAHTLWTLAQRGELLPHIAASLARVASGF 100 GWI+PL L VE A+L WI ARLLPPPSE+ TL L ++G LL HI+AS+ARV SG+ Sbjct: 50 GWILPLAVLGFVEVAAQLGWIQARLLPPPSEIVQTLSALLEQG-LLVHISASVARVFSGY 108 Query: 101 VIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAI 160 IG+VLA+ GL VG+S+ AEA EP+FQALRAIPSLAW+PLLLLW GIDETPK+ LIAI Sbjct: 109 AIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDETPKITLIAI 168 Query: 161 GAFFPVYLNLVAGIRDIDHKLIEVGTSSGLSTGELIRHILLPASLPYLFAGLRGGLSLAW 220 GAFFP+YL LV+GIR++D KLIE+G GLS L R I+LPA+LP LF GLR GLSLAW Sbjct: 169 GAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVLPAALPSLFTGLRNGLSLAW 228 Query: 221 MFLVAAELIAATKGVGYLLSDGRESSRPDLVLSAILILALLGKVSDSLLRAVEQKSLGWR 280 MFLVAAELIAATKG+GYLL+DGRE+SRPD+VL+AI +LA+LGK++D LL+ +E + L W Sbjct: 229 MFLVAAELIAATKGIGYLLTDGRETSRPDVVLAAIFLLAILGKLTDGLLKWLETRKLAWS 288 Query: 281 EA 282 ++ Sbjct: 289 DS 290 >ref|YP_789699.1| ABC transporter permease [Pseudomonas aeruginosa UCBPP-PA14] ref|ZP_06877510.1| ABC transporter permease [Pseudomonas aeruginosa PAb1] ref|ZP_07794791.1| putative permease of ABC transporter [Pseudomonas aeruginosa 39016] gb|ABJ12704.1| putative aliphatic sulfonates ABC transporter [Pseudomonas aeruginosa UCBPP-PA14] gb|EFQ39887.1| putative permease of ABC transporter [Pseudomonas aeruginosa 39016] gb|EGM14909.1| ABC transporter permease [Pseudomonas aeruginosa 152504] dbj|BAK91409.1| ABC transporter permease [Pseudomonas aeruginosa NCGM2.S1] Length = 274 Score = 275 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 166/247 (67%), Positives = 201/247 (81%), Gaps = 1/247 (0%) Query: 36 PGRFTGWIVPLLFLLAVEAGARLDWIPARLLPPPSELAHTLWTLAQRGELLPHIAASLAR 95 PG + W +PLL L + EA RL W+PA +P PS + TL LA RGEL H+ ASLAR Sbjct: 22 PGAWRAWALPLLALSSWEALVRLGWLPAYQMPAPSGILLTLVELA-RGELWGHVGASLAR 80 Query: 96 VASGFVIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKV 155 VA+GF IGS LA+A+G VG+SRRAEA LEPSFQALRAIPSLAW+PLLLLW GIDETPK+ Sbjct: 81 VAAGFAIGSGLALAVGTWVGLSRRAEAYLEPSFQALRAIPSLAWVPLLLLWFGIDETPKI 140 Query: 156 VLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTSSGLSTGELIRHILLPASLPYLFAGLRGG 215 VLIA+GAFFPVYL LVAG+R +D K +E+G LS L+R ILLPA+LP LF GLRG Sbjct: 141 VLIALGAFFPVYLALVAGVRGVDRKWVELGRLYRLSRFALVRRILLPAALPNLFTGLRGA 200 Query: 216 LSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLSAILILALLGKVSDSLLRAVEQK 275 LSL+WMFLVAAELIAAT+G+GYLLSDGRE+SRPDLV++AIL+LA LGK+SD LLR++E++ Sbjct: 201 LSLSWMFLVAAELIAATQGLGYLLSDGRETSRPDLVIAAILVLAALGKLSDGLLRSLERR 260 Query: 276 SLGWREA 282 +L WR++ Sbjct: 261 ALRWRDS 267 >ref|YP_002439216.1| putative permease of ABC transporter [Pseudomonas aeruginosa LESB58] emb|CAW26340.1| probable permease of ABC transporter [Pseudomonas aeruginosa LESB58] Length = 274 Score = 275 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 165/247 (66%), Positives = 200/247 (80%), Gaps = 1/247 (0%) Query: 36 PGRFTGWIVPLLFLLAVEAGARLDWIPARLLPPPSELAHTLWTLAQRGELLPHIAASLAR 95 PG + W +PLL L + EA RL W+PA +P PS + TL LA RGEL H+ ASLAR Sbjct: 22 PGTWRAWALPLLALSSWEALVRLGWLPAYQMPAPSGILLTLVELA-RGELWGHVGASLAR 80 Query: 96 VASGFVIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKV 155 VA+GF IGS LA+ +G VG+SRRAEA LEPSFQALRAIPSLAW+PLLLLW GIDETPK+ Sbjct: 81 VAAGFAIGSGLALVVGTWVGLSRRAEAYLEPSFQALRAIPSLAWVPLLLLWFGIDETPKI 140 Query: 156 VLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTSSGLSTGELIRHILLPASLPYLFAGLRGG 215 VLIA+GAFFPVYL LVAG+R +D K +E+G LS L+R ILLPA+LP LF GLRG Sbjct: 141 VLIALGAFFPVYLALVAGVRGVDRKWVELGRLYRLSRFALVRRILLPAALPNLFTGLRGA 200 Query: 216 LSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLSAILILALLGKVSDSLLRAVEQK 275 LSL+WMFLVAAELIAAT+G+GYLLSDGRE+SRPDLV++AIL+LA LGK+SD LLR++E++ Sbjct: 201 LSLSWMFLVAAELIAATQGLGYLLSDGRETSRPDLVIAAILVLAALGKLSDGLLRSLERR 260 Query: 276 SLGWREA 282 +L WR++ Sbjct: 261 ALRWRDS 267 >ref|YP_001347063.1| ABC transporter permease [Pseudomonas aeruginosa PA7] gb|ABR82504.1| probable permease of ABC transporter [Pseudomonas aeruginosa PA7] Length = 274 Score = 275 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 165/247 (66%), Positives = 200/247 (80%), Gaps = 1/247 (0%) Query: 36 PGRFTGWIVPLLFLLAVEAGARLDWIPARLLPPPSELAHTLWTLAQRGELLPHIAASLAR 95 PG + W +PLL L + EA RL W+PA +P PS + TL LA RGEL H+ ASLAR Sbjct: 22 PGAWRAWALPLLALSSWEALVRLGWLPAYQMPAPSGILLTLVELA-RGELWGHVGASLAR 80 Query: 96 VASGFVIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKV 155 VA+GF IGS LA+A+G VG+SRRAEA LEPSFQALRAIPSLAW+PLLLLW GIDETPK+ Sbjct: 81 VAAGFAIGSGLALAVGTWVGLSRRAEAYLEPSFQALRAIPSLAWVPLLLLWFGIDETPKI 140 Query: 156 VLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTSSGLSTGELIRHILLPASLPYLFAGLRGG 215 VLI +GAFFPVYL LVAG+R +D K +E+G LS L+R ILLPA+LP LF GLRG Sbjct: 141 VLIVLGAFFPVYLALVAGVRGVDRKWVELGRLYRLSRFALVRRILLPAALPNLFTGLRGA 200 Query: 216 LSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLSAILILALLGKVSDSLLRAVEQK 275 LSL+WMFLVAAELIAAT+G+GYLLSDGRE+SRPDLV++AIL+LA LGK+SD LLR++E++ Sbjct: 201 LSLSWMFLVAAELIAATQGLGYLLSDGRETSRPDLVIAAILVLATLGKLSDGLLRSLERR 260 Query: 276 SLGWREA 282 +L WR++ Sbjct: 261 ALRWRDS 267