BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0765.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774075.1| transmembrane protein [Herbaspirillum serope... 338 3e-91 ref|YP_003777283.1| transmembrane protein [Herbaspirillum serope... 226 3e-57 ref|YP_004751301.1| hypothetical protein CFU_0642 [Collimonas fu... 224 7e-57 ref|YP_001354800.1| hypothetical protein mma_3110 [Janthinobacte... 223 3e-56 ref|YP_004754467.1| hypothetical protein CFU_3820 [Collimonas fu... 220 1e-55 >ref|YP_003774075.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62167.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 242 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 215/245 (87%), Positives = 224/245 (91%), Gaps = 3/245 (1%) Query: 1 MWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFVIRLFRRKSESAQ 60 MWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFV+R+FRRKSE++Q Sbjct: 1 MWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFVVRMFRRKSEASQ 60 Query: 61 SAQPAPAWASAAPQAAEPQSSTPQIGSMLKTDQSAASTTQNGFGGGFGNAEAAPAYGIPA 120 A A A A S+TPQIGSMLKTDQSAA+ TQ GFGGGFGNAE APAYG+PA Sbjct: 61 PAPAWAGAAPQAADNA---SATPQIGSMLKTDQSAAAATQGGFGGGFGNAEQAPAYGVPA 117 Query: 121 GFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAAANQTDVVS 180 GFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAA+NQTDVVS Sbjct: 118 GFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAASNQTDVVS 177 Query: 181 LDAEVLGVETVGNDYLASVKFFGFIKEDPTASPVQFAEIWNLSKPAAGQGGWVLAGIQQL 240 LDAEVLGVETVGNDYLASVKFFGFIKEDPTASP QFAEIWNLSKPAAGQGGWVLAGIQQ+ Sbjct: 178 LDAEVLGVETVGNDYLASVKFFGFIKEDPTASPAQFAEIWNLSKPAAGQGGWVLAGIQQI 237 Query: 241 DPVQG 245 DPV Sbjct: 238 DPVSA 242 >ref|YP_003777283.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65375.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 125/225 (55%), Positives = 160/225 (71%), Gaps = 7/225 (3%) Query: 19 LSHFGLGGALASMISTILTVALIALAIMFVIRLFRRKSESAQSAQPAPAWASAAPQAAEP 78 +SHFG+GGA+ ++ ++LT+AL+ A++F+IR+F R E+ + PA+A+ P + Sbjct: 97 MSHFGIGGAMGGLLGSLLTIALLCAAVIFLIRMFARGREAQNNN---PAYATPMPGVSPI 153 Query: 79 QSS---TPQIGSMLKTDQSAASTTQNGFGGGFGNAEAAPAYGIPAGFDTVGFVRNAKTYF 135 S+ TP+IGS L+ + N +G +GIP GFDT GFVRNAKTYF Sbjct: 154 GSAAGATPEIGSGLRDINPPPALQGNAYGAA-AQPAQIQQWGIPEGFDTAGFVRNAKTYF 212 Query: 136 IRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAAANQTDVVSLDAEVLGVETVGNDY 195 IRLQAAWD+AD+NDIREFTTPEMFAELR+Q+ ERGAA N TDVV LDA++LG+ET+ DY Sbjct: 213 IRLQAAWDRADVNDIREFTTPEMFAELRMQLTERGAAPNATDVVQLDAQLLGIETMAFDY 272 Query: 196 LASVKFFGFIKEDPTASPVQFAEIWNLSKPAAGQGGWVLAGIQQL 240 LA+V+F G IKE P S FAEIWNLSKP G GGWVLAGIQQ+ Sbjct: 273 LATVRFQGLIKEAPDVSAEPFAEIWNLSKPLNGSGGWVLAGIQQV 317 >ref|YP_004751301.1| hypothetical protein CFU_0642 [Collimonas fungivorans Ter331] gb|AEK60478.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 309 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 135/228 (59%), Positives = 162/228 (71%), Gaps = 22/228 (9%) Query: 19 LSHFGLGGALASMISTILTVALIALAIMFVIRLFRRKSESAQSAQPAPAWASAA--PQAA 76 +SHFG+GGA S L +AL+A+A++FV+RL RKS S PAPA S A P A+ Sbjct: 98 MSHFGMGGAFGSF----LMMALLAVAVIFVVRLLMRKS----SNTPAPAAYSGANSPAAS 149 Query: 77 EPQSS---TPQIGSMLKTDQSAASTTQNGFGGGFGNAEAAPAYGIPAGFDTVGFVRNAKT 133 +S TP+IGS + + S S+ G +AP +GIP FD GFVR+AKT Sbjct: 150 FDSNSSGFTPEIGSRINSGPSFQSSAPAG--------HSAP-WGIPDDFDVPGFVRSAKT 200 Query: 134 YFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAAANQTDVVSLDAEVLGVETVGN 193 YFIRLQAAWDKADINDIREFTTPEMF ELRLQ+QERGA+ N TDVV LD E++G+ET+G+ Sbjct: 201 YFIRLQAAWDKADINDIREFTTPEMFGELRLQLQERGASPNNTDVVQLDGELMGIETIGS 260 Query: 194 DYLASVKFFGFIKEDPTASPVQFAEIWNLSKPAAGQGGWVLAGIQQLD 241 DYLASVKF G IKE P AS F E+WNLSKP GQGGWVLAGIQQ++ Sbjct: 261 DYLASVKFTGLIKEVPEASAEPFTEVWNLSKPQTGQGGWVLAGIQQIN 308 >ref|YP_001354800.1| hypothetical protein mma_3110 [Janthinobacterium sp. Marseille] gb|ABR90330.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 307 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 130/221 (58%), Positives = 152/221 (68%), Gaps = 8/221 (3%) Query: 20 SHFGLGGALASMISTILTVALIALAIMFVIRLFRRKSESAQSAQPAPAWASAAPQAAEPQ 79 SH G+GGA ASMISTIL VAL+ A MF+ R+ + KS + +AQP+ A +A + Sbjct: 94 SHLGIGGAFASMISTILMVALLGFAAMFIYRMIKNKS-AGNNAQPSFANGYSA------K 146 Query: 80 SSTPQIGSMLKTDQSAASTTQNGFGGGFGNAEAAPAYGIPAGFDTVGFVRNAKTYFIRLQ 139 +STP IGS L S Q+ G A A +PA FD F+RNAKTYFIRLQ Sbjct: 147 NSTPDIGSGLNQQYQQPSALQSAAPMASGAAYEA-VNELPADFDVESFIRNAKTYFIRLQ 205 Query: 140 AAWDKADINDIREFTTPEMFAELRLQIQERGAAANQTDVVSLDAEVLGVETVGNDYLASV 199 AAWDKADINDIREFTTPEMFAEL+LQ+QERGA N TDVV+L+ E GVETVGNDY+AS+ Sbjct: 206 AAWDKADINDIREFTTPEMFAELKLQLQERGATPNVTDVVTLNGEFYGVETVGNDYIASI 265 Query: 200 KFFGFIKEDPTASPVQFAEIWNLSKPAAGQGGWVLAGIQQL 240 KF G I+E A F+E WNLSKP G GGWVLAGIQQL Sbjct: 266 KFTGMIREADHAPTEPFSEAWNLSKPVNGNGGWVLAGIQQL 306 >ref|YP_004754467.1| hypothetical protein CFU_3820 [Collimonas fungivorans Ter331] gb|AEK63644.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 315 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 144/244 (59%), Positives = 174/244 (71%), Gaps = 8/244 (3%) Query: 1 MWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFVIRLFRRKSESAQ 60 MWKG+LGGALLGLGLGALLS GLGGA+A MIS I+ +AL A A MF+ +L RRK + Sbjct: 74 MWKGMLGGALLGLGLGALLSSMGLGGAMAGMISNIIMIALFAFAAMFIYKLVRRKMGNGA 133 Query: 61 SAQPA--PAWASAAPQAAEPQSSTPQIGSMLKTD-QSAASTTQNGFGGGFGNAEAAPAYG 117 + PA+A+ AP S TP+I S L+ Q A A+G Sbjct: 134 AGNNGMRPAFAAQAPS-----SFTPEIASRLEQPMQRTAFDAAPAAAATGAGVAGVAAWG 188 Query: 118 IPAGFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAAANQTD 177 +PA FDT GF+R++KTYF+RLQAAWDKAD NDIREFTTPEMFAELR+Q+QERGA+ N TD Sbjct: 189 VPADFDTAGFLRHSKTYFLRLQAAWDKADSNDIREFTTPEMFAELRMQLQERGASDNHTD 248 Query: 178 VVSLDAEVLGVETVGNDYLASVKFFGFIKEDPTASPVQFAEIWNLSKPAAGQGGWVLAGI 237 VVSLDAE+LG+ET +YLASVKF G IKED A F+E+WNLSKP AGQGGW+LAGI Sbjct: 249 VVSLDAELLGIETADAEYLASVKFTGMIKEDDAAFAAPFSEVWNLSKPTAGQGGWILAGI 308 Query: 238 QQLD 241 +Q++ Sbjct: 309 EQVE 312