BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0759.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774074.1| hypothetical protein Hsero_0647 [Herbaspiril...   127   5e-28

>ref|YP_003774074.1| hypothetical protein Hsero_0647 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62166.1| hypothetical protein Hsero_0647 [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 109/140 (77%), Positives = 115/140 (82%), Gaps = 3/140 (2%)

Query: 1   MKRLWVLLLICLLPVQVFAAVLTYASSMAATDFAIPAPVQAAVATQHLVSKTVSLSDQAA 60
           MKRLWVLLLICLLPVQVFAAVLTYASSMAATDFA       A A QHL  KTVSLSDQAA
Sbjct: 1   MKRLWVLLLICLLPVQVFAAVLTYASSMAATDFA-APVPVQAAAVQHLAGKTVSLSDQAA 59

Query: 61  SLSDDQSHALVADAAGSDDDSTGYADSGEDFSTHAGIGDEPVLMQSLAMVPQTSRLAPAL 120
           +     S AL+AD   SD+DS GY D+GEDFSTHAGIGDEPVL+QSLA+VPQ S LAPAL
Sbjct: 60  ADD--ASQALLADNGSSDEDSAGYLDNGEDFSTHAGIGDEPVLIQSLAVVPQASSLAPAL 117

Query: 121 RSDAALQPPFLPRAGRPPRA 140
            SDAALQPPFLPRAGRPPRA
Sbjct: 118 SSDAALQPPFLPRAGRPPRA 137