BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0756.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774071.1| hypothetical protein Hsero_0644 [Herbaspiril...   159   1e-37
ref|YP_001100875.1| hypothetical protein HEAR2632 [Herminiimonas...    85   3e-15
ref|ZP_08503718.1| Membrane protein [Methyloversatilis universal...    74   9e-12
ref|YP_001020721.1| membrane protein [Methylibium petroleiphilum...    69   3e-10
ref|YP_294750.1| hypothetical protein Reut_A0524 [Ralstonia eutr...    67   1e-09

>ref|YP_003774071.1| hypothetical protein Hsero_0644 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62163.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/94 (89%), Positives = 88/94 (93%)

Query: 1  MDHGTPPPDPGNQWHRTRRMTAWLLALWFAATFFFIYFARELDRVHLFGWPVSFYMAAQG 60
          MDHG  P DPGNQWHRTRRMTAWLLALWF ATFFFIYFARELDRVHLFGWP+SFYMAAQG
Sbjct: 1  MDHGALPSDPGNQWHRTRRMTAWLLALWFLATFFFIYFARELDRVHLFGWPISFYMAAQG 60

Query: 61 MMLIYLAIVVLYVRRMRRIEQLVRREQGEHWHGE 94
          MMLIYLAIVV+Y+RRMRRIEQLVRREQGE  +GE
Sbjct: 61 MMLIYLAIVVIYLRRMRRIEQLVRREQGESGNGE 94


>ref|YP_001100875.1| hypothetical protein HEAR2632 [Herminiimonas arsenicoxydans]
 emb|CAL62754.1| Conserved hypothetical protein; putative exported protein
          [Herminiimonas arsenicoxydans]
          Length = 97

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 3/85 (3%)

Query: 9  DPGNQ-WHRTRRMTAWLLALWFAATFFFIYFARELDRVHLFGWPVSFYMAAQGMMLIYLA 67
          DP  + W RTRRMT WLL  WFA TF  I+FAR L    L GWP+SF+MAAQG +LIY+A
Sbjct: 11 DPARRYWQRTRRMTLWLLLAWFAVTFTAIFFARPLSAYTLLGWPISFFMAAQGSILIYVA 70

Query: 68 IVVLYVRRMRRIEQ--LVRREQGEH 90
          I+ +Y  RMR +++  L+ +   EH
Sbjct: 71 IIAIYALRMRALDKAYLLEKSDSEH 95


>ref|ZP_08503718.1| Membrane protein [Methyloversatilis universalis FAM5]
 gb|EGK72894.1| Membrane protein [Methyloversatilis universalis FAM5]
          Length = 86

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 48/68 (70%)

Query: 14 WHRTRRMTAWLLALWFAATFFFIYFARELDRVHLFGWPVSFYMAAQGMMLIYLAIVVLYV 73
          W R  RMTA LLA+WFA TF  IYFAREL+ +  FGWP++FYM AQG +++Y+ ++  Y 
Sbjct: 11 WRRNLRMTATLLAIWFAVTFLPIYFARELNDISFFGWPLAFYMGAQGSLIVYVLLIGYYA 70

Query: 74 RRMRRIEQ 81
            M R++ 
Sbjct: 71 WAMNRLDH 78


>ref|YP_001020721.1| membrane protein [Methylibium petroleiphilum PM1]
 gb|ABM94486.1| membrane protein [Methylibium petroleiphilum PM1]
          Length = 85

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 14 WHRTRRMTAWLLALWFAATFFFIYFARELDRVHLFGWPVSFYMAAQGMMLIYLAIVVLYV 73
          W +  R+T+ LLA+WF  T+   YFAR+L     FGWP SFYMAAQG ++IY+ I+  Y 
Sbjct: 11 WQKNLRITSVLLAIWFVVTYVMAYFARDLS-FSFFGWPFSFYMAAQGSLIIYVVIIWYYA 69

Query: 74 RRMRRIEQ 81
          R M R++Q
Sbjct: 70 RTMNRLDQ 77


>ref|YP_294750.1| hypothetical protein Reut_A0524 [Ralstonia eutropha JMP134]
 gb|AAZ59906.1| putative membrane protein [Ralstonia eutropha JMP134]
          Length = 106

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 6  PPPDPG--NQWHRTRRMTAWLLALWFAATFFFIYFARELDRVHLFGWPVSFYMAAQGMML 63
          PP DP     W R RR    LLA+WF  TF   +FAR+L R   FGWP SF++ AQG ++
Sbjct: 5  PPVDPALKRSWQRNRRWICALLAVWFVVTFVVSWFARDL-RFDFFGWPFSFWVGAQGALV 63

Query: 64 IYLAIVVLYVRRMRRIE 80
          +Y+ +  LY  RM R +
Sbjct: 64 VYVLMTALYAWRMNRAD 80