BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0749.p         (221 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774064.1| hypothetical protein Hsero_0637 [Herbaspiril...   293   2e-77
ref|YP_004754478.1| hypothetical protein CFU_3831 [Collimonas fu...   233   2e-59
ref|YP_548672.1| cupin 2 barrel-domain containing protein [Polar...   231   6e-59
ref|YP_004154575.1| Cupin 2 barrel domain-containing protein [Va...   228   4e-58
ref|YP_002945246.1| cupin [Variovorax paradoxus S110] >gi|239802...   228   5e-58

>ref|YP_003774064.1| hypothetical protein Hsero_0637 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62156.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 147

 Score =  293 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 141/147 (95%), Positives = 143/147 (97%)

Query: 75  MNTVAEASVLAQNSFSHVSEGDTPYETGGLRDFFLYRDLGIAAATGGQVVAQLVKANMAP 134
           MNTVAEASVLAQN+FSHVSEGDTPYETGGLRDFFLYRDLGIAAATGGQVVAQLVKAN AP
Sbjct: 1   MNTVAEASVLAQNTFSHVSEGDTPYETGGLRDFFLYRDLGIAAATGGQVVAQLVKANTAP 60

Query: 135 ETGTGWHRHEANFHIVIMLKGWARFMYETEVTLVKAGDCVHQRPGIVHFLFDYSPDMEYL 194
           + GTGWHRHEANFHIVIMLKGWARFMYETEVTLVKAGDCVHQRPGIVHFLFDYSPDMEYL
Sbjct: 61  QAGTGWHRHEANFHIVIMLKGWARFMYETEVTLVKAGDCVHQRPGIVHFLFDYSPDMEYL 120

Query: 195 EIVSPADFKTIDMPPPCEVPAPTPWNN 221
           EIVSPADFKTI MP PCEVPAPTPWNN
Sbjct: 121 EIVSPADFKTIAMPAPCEVPAPTPWNN 147


>ref|YP_004754478.1| hypothetical protein CFU_3831 [Collimonas fungivorans Ter331]
 gb|AEK63655.1| hypothetical protein CFU_3831 [Collimonas fungivorans Ter331]
          Length = 147

 Score =  233 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 108/133 (81%), Positives = 115/133 (86%), Gaps = 2/133 (1%)

Query: 75  MNTVAEASVLAQNSFSHVSEGDTPYETGGLRDFFLYRDLGIAAATGGQVVAQLVKANMAP 134
           M+T  EA    +  FSHV EGDT +E+GGLRDFFLYRDLGIAAATGGQVVA LVKANMAP
Sbjct: 1   MDTKTEAG--PKTVFSHVREGDTEFESGGLRDFFLYRDLGIAAATGGQVVAHLVKANMAP 58

Query: 135 ETGTGWHRHEANFHIVIMLKGWARFMYETEVTLVKAGDCVHQRPGIVHFLFDYSPDMEYL 194
           E GTGWHRHEA+FHIV MLKGWARFMYE + TLVKAGDCVHQRPGIVHFLFDYS DMEYL
Sbjct: 59  EVGTGWHRHEADFHIVYMLKGWARFMYEDKETLVKAGDCVHQRPGIVHFLFDYSEDMEYL 118

Query: 195 EIVSPADFKTIDM 207
           EIVSPA F +IDM
Sbjct: 119 EIVSPAAFTSIDM 131


>ref|YP_548672.1| cupin 2 barrel-domain containing protein [Polaromonas sp. JS666]
 gb|ABE43774.1| Cupin 2, conserved barrel [Polaromonas sp. JS666]
          Length = 141

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 105/131 (80%), Positives = 115/131 (87%)

Query: 89  FSHVSEGDTPYETGGLRDFFLYRDLGIAAATGGQVVAQLVKANMAPETGTGWHRHEANFH 148
           FSHV  GDTP+++ GLRDFFLYRDLGIA AT G+V+A LVKANMAPE GTGWHRHEA+F 
Sbjct: 9   FSHVKPGDTPFKSDGLRDFFLYRDLGIAEATHGKVIAHLVKANMAPEKGTGWHRHEADFQ 68

Query: 149 IVIMLKGWARFMYETEVTLVKAGDCVHQRPGIVHFLFDYSPDMEYLEIVSPADFKTIDMP 208
           IVIMLKGWARFMYE   TLV AGDCVHQRPGI H+LFDYSPDMEYLEIVSPADFK+ID+ 
Sbjct: 69  IVIMLKGWARFMYEDRETLVSAGDCVHQRPGIRHYLFDYSPDMEYLEIVSPADFKSIDVE 128

Query: 209 PPCEVPAPTPW 219
           P CE+P PTPW
Sbjct: 129 PVCEIPEPTPW 139


>ref|YP_004154575.1| Cupin 2 barrel domain-containing protein [Variovorax paradoxus EPS]
 gb|ADU36464.1| Cupin 2 conserved barrel domain protein [Variovorax paradoxus EPS]
          Length = 140

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 105/131 (80%), Positives = 116/131 (88%)

Query: 89  FSHVSEGDTPYETGGLRDFFLYRDLGIAAATGGQVVAQLVKANMAPETGTGWHRHEANFH 148
           FSHV  GDT + +GGLRDFFLYRDLG+A AT G+V+A LVKANMAPETGTGWHRHEA+F 
Sbjct: 9   FSHVKPGDTEFVSGGLRDFFLYRDLGVAEATNGKVIAHLVKANMAPETGTGWHRHEADFQ 68

Query: 149 IVIMLKGWARFMYETEVTLVKAGDCVHQRPGIVHFLFDYSPDMEYLEIVSPADFKTIDMP 208
           IVIMLKGWARFMYE + TLV+AGD VHQRPGI HFLFDYSPDMEYLEIVSPADFK+ID+ 
Sbjct: 69  IVIMLKGWARFMYEDKETLVEAGDVVHQRPGIRHFLFDYSPDMEYLEIVSPADFKSIDVE 128

Query: 209 PPCEVPAPTPW 219
           P CE+P PTPW
Sbjct: 129 PVCEIPPPTPW 139


>ref|YP_002945246.1| cupin [Variovorax paradoxus S110]
 gb|ACS19980.1| Cupin 2 conserved barrel domain protein [Variovorax paradoxus S110]
          Length = 140

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 106/131 (80%), Positives = 115/131 (87%)

Query: 89  FSHVSEGDTPYETGGLRDFFLYRDLGIAAATGGQVVAQLVKANMAPETGTGWHRHEANFH 148
           FSHV  GDT Y +GGLRDFFLYRDLGIA AT G+V+A LVKANMAPETGTGWHRHEA+F 
Sbjct: 9   FSHVKPGDTEYVSGGLRDFFLYRDLGIAEATNGKVIAHLVKANMAPETGTGWHRHEADFQ 68

Query: 149 IVIMLKGWARFMYETEVTLVKAGDCVHQRPGIVHFLFDYSPDMEYLEIVSPADFKTIDMP 208
           IVIMLKGWARFMYE + T V+AGD VHQRPGI HFLFDYSPDMEYLEIVSPADFK+ID+ 
Sbjct: 69  IVIMLKGWARFMYEDKETRVEAGDVVHQRPGIRHFLFDYSPDMEYLEIVSPADFKSIDVE 128

Query: 209 PPCEVPAPTPW 219
           P CE+P PTPW
Sbjct: 129 PVCEIPPPTPW 139