BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0744.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774059.1| permease [Herbaspirillum seropedicae SmR1] >... 494 e-138 ref|YP_004754489.1| putative permease [Collimonas fungivorans Te... 424 e-116 ref|ZP_04577360.1| permease [Oxalobacter formigenes HOxBLS] >gi|... 340 2e-91 ref|ZP_04579512.1| predicted protein [Oxalobacter formigenes OXC... 322 6e-86 gb|AEG68180.1| permease transmembrane transport protein [Ralston... 320 3e-85 >ref|YP_003774059.1| permease [Herbaspirillum seropedicae SmR1] gb|ADJ62151.1| permease transmembrane transport protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 320/359 (89%), Positives = 343/359 (95%) Query: 1 MPFSLSEEQKQNLAWLIVGILLLALLVALGPMLSPFVAAGIIGYALNPGVDWIASRRIGP 60 MPFSLSEEQKQNL WLIVG LLLALL+ALGPMLSPFVAAGIIGYALNPGVDWIASRR+GP Sbjct: 1 MPFSLSEEQKQNLVWLIVGFLLLALLIALGPMLSPFVAAGIIGYALNPGVDWIASRRLGP 60 Query: 61 LRIPRFVGVTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFLSPRLHQL 120 +R+PRFV VTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAF+SPRLHQL Sbjct: 61 VRVPRFVAVTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFVSPRLHQL 120 Query: 121 GIDVRLDLAGIKALLTQQISTSGDELWSSVLASAKVGGTALLAWLANLLFVPMVLFYLLQ 180 GIDVRLDLAGIK+LLTQQISTS DE+W+SVLASAKVGGTALL WLANLLFVPMVLFYLLQ Sbjct: 121 GIDVRLDLAGIKSLLTQQISTSSDEVWTSVLASAKVGGTALLTWLANLLFVPMVLFYLLQ 180 Query: 181 DWHPFLKRLQFMIPRRWAGRVNTMATEVDSLLGQYLRGQLLVMLVLAVYYSVALTAAGFD 240 DWH F+KR+Q +IPRRWAGR+NTMA EVD LLGQYLRGQLLVMLVLAVYYSVALTAAGFD Sbjct: 181 DWHQFIKRMQILIPRRWAGRINTMAAEVDGLLGQYLRGQLLVMLVLAVYYSVALTAAGFD 240 Query: 241 SALPVGVLTGLLVFIPYVGFGLGLVLALIAAVLQFTGLYGLVAVAIIYGIGQVLESFILT 300 SALPVGVLTGLLVFIPYVGFGLGLVLA++AA+LQF G GL+ VA+IYG+GQVLESFILT Sbjct: 241 SALPVGVLTGLLVFIPYVGFGLGLVLAILAAILQFDGAIGLLWVALIYGVGQVLESFILT 300 Query: 301 PKLVGERIGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSVVVRHLRQHYLSSSFYN 359 PKLVGERIGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSV+ H+R+ YL+S+FYN Sbjct: 301 PKLVGERIGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSVIALHVRREYLASNFYN 359 >ref|YP_004754489.1| putative permease [Collimonas fungivorans Ter331] gb|AEK63666.1| Putative permease often clustered with de novo purine synthesis [Collimonas fungivorans Ter331] Length = 360 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 248/360 (68%), Positives = 305/360 (84%) Query: 1 MPFSLSEEQKQNLAWLIVGILLLALLVALGPMLSPFVAAGIIGYALNPGVDWIASRRIGP 60 MPFS ++EQKQ WL +G+LL+AL+VALGP+L+PF+A+ I+ YALNPGVDW++ RRIG Sbjct: 1 MPFSFTDEQKQTALWLGLGLLLIALMVALGPILTPFIASAILAYALNPGVDWLSRRRIGK 60 Query: 61 LRIPRFVGVTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFLSPRLHQL 120 PR + V +++LLL+ A LA++LIVVP++ ++ PLLQ Q+P L+KL+ + P L Sbjct: 61 FPFPRALAVLVVILLLVFAILAVILIVVPVLRKEFPLLQDQIPNFLNKLDGLIGPHLQDF 120 Query: 121 GIDVRLDLAGIKALLTQQISTSGDELWSSVLASAKVGGTALLAWLANLLFVPMVLFYLLQ 180 GI+VRLD GIK +LT+Q+STSGDE+W+SVLAS KVGGTA+L WLA +L VP+VLFYLLQ Sbjct: 121 GINVRLDGTGIKEMLTKQLSTSGDEIWTSVLASVKVGGTAVLGWLATILLVPVVLFYLLQ 180 Query: 181 DWHPFLKRLQFMIPRRWAGRVNTMATEVDSLLGQYLRGQLLVMLVLAVYYSVALTAAGFD 240 DWH ++RL ++PRRW G+ M EVDSLL QYLRGQLLVMLVLA+YYS L AGFD Sbjct: 181 DWHSIVERLGRLVPRRWQGKTGNMTQEVDSLLAQYLRGQLLVMLVLAIYYSTGLAIAGFD 240 Query: 241 SALPVGVLTGLLVFIPYVGFGLGLVLALIAAVLQFTGLYGLVAVAIIYGIGQVLESFILT 300 ALPVG++TGLLVFIPYVGFGLGLVLALIAA+LQF+G +GL+AVAI+YGIGQVLESFILT Sbjct: 241 VALPVGIITGLLVFIPYVGFGLGLVLALIAAMLQFSGWHGLIAVAIVYGIGQVLESFILT 300 Query: 301 PKLVGERIGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSVVVRHLRQHYLSSSFYNS 360 P+LVGERIGLHPLVVIFAL+AFGQLFGFVG+LLALP SAI+SVVV+H+R HYLSSSFYN+ Sbjct: 301 PRLVGERIGLHPLVVIFALMAFGQLFGFVGILLALPCSAIMSVVVKHVRAHYLSSSFYNT 360 >ref|ZP_04577360.1| permease [Oxalobacter formigenes HOxBLS] gb|EEO28322.1| permease [Oxalobacter formigenes HOxBLS] Length = 359 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 192/356 (53%), Positives = 267/356 (75%) Query: 5 LSEEQKQNLAWLIVGILLLALLVALGPMLSPFVAAGIIGYALNPGVDWIASRRIGPLRIP 64 + +Q+Q W +GI L+ +L+ LGP+L+PF+A I+ YALNP VDW+ S+RIG LR+P Sbjct: 4 FTPQQRQTALWTGIGIFLIVILLLLGPILTPFIAGAILAYALNPIVDWLRSKRIGTLRLP 63 Query: 65 RFVGVTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFLSPRLHQLGIDV 124 R + V I++LLLI A LI++P+++R+ P+L Q+P + K+N +LSP L++LGI + Sbjct: 64 RLIAVIIVMLLLIAIVTAFALIMIPMLIREWPMLYEQIPAFIAKVNNYLSPILNELGIQI 123 Query: 125 RLDLAGIKALLTQQISTSGDELWSSVLASAKVGGTALLAWLANLLFVPMVLFYLLQDWHP 184 D AGIK +LT+Q GD +W S++ASAK GGTA+L W NL+ +P+VLFYLL+DWH Sbjct: 124 PADNAGIKKILTEQFVPKGDGVWKSLIASAKFGGTAVLTWAWNLILIPVVLFYLLKDWHI 183 Query: 185 FLKRLQFMIPRRWAGRVNTMATEVDSLLGQYLRGQLLVMLVLAVYYSVALTAAGFDSALP 244 +++L+ MIPRRW R + + EV+S+L QYLRGQLLVM++L+ YYS+ L AG++ ALP Sbjct: 184 MMRKLRDMIPRRWVTRAVSFSREVNSMLAQYLRGQLLVMVILSSYYSITLALAGYNVALP 243 Query: 245 VGVLTGLLVFIPYVGFGLGLVLALIAAVLQFTGLYGLVAVAIIYGIGQVLESFILTPKLV 304 VG++TG+L FIPY+G GL LA+ A +LQFTG+ + + IIYG G + ++TPKLV Sbjct: 244 VGIMTGMLAFIPYIGICFGLALAITATLLQFTGMEAWITLGIIYGFGYSFDGLLMTPKLV 303 Query: 305 GERIGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSVVVRHLRQHYLSSSFYNS 360 G+RI LHPL+VIFALLAFGQLFGFVG+LLALP+SAI+SV +HLR +Y S+FY S Sbjct: 304 GDRIQLHPLIVIFALLAFGQLFGFVGILLALPSSAILSVAYKHLRNYYFDSNFYKS 359 >ref|ZP_04579512.1| predicted protein [Oxalobacter formigenes OXCC13] gb|EEO30485.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 359 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 187/356 (52%), Positives = 261/356 (73%) Query: 5 LSEEQKQNLAWLIVGILLLALLVALGPMLSPFVAAGIIGYALNPGVDWIASRRIGPLRIP 64 + +Q+Q W +GILL+ LL+ LGP+L+PF+A I+ YALNP VDW+ S RIG RIP Sbjct: 4 FTPQQRQTALWTGIGILLILLLLLLGPILTPFIAGAILAYALNPVVDWLRSLRIGSFRIP 63 Query: 65 RFVGVTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFLSPRLHQLGIDV 124 R V I+VL LI LI++P++L++ P+L Q+P + K++ L+P L+++GI + Sbjct: 64 RLASVVIVVLFLISLVTTFALIMIPMLLKEWPILYEQIPAFVAKVSNHLNPVLNEIGIQM 123 Query: 125 RLDLAGIKALLTQQISTSGDELWSSVLASAKVGGTALLAWLANLLFVPMVLFYLLQDWHP 184 +D AG+K +LT+Q GD +W S++ASAK GGTA+L W NL+ +P+VLFYLL DWH Sbjct: 124 PVDNAGVKKILTEQFFPKGDGVWKSLIASAKFGGTAVLTWAWNLILIPVVLFYLLLDWHI 183 Query: 185 FLKRLQFMIPRRWAGRVNTMATEVDSLLGQYLRGQLLVMLVLAVYYSVALTAAGFDSALP 244 ++L+ MIPRRW G+ EV+++L QYLRGQLLVML+L++YYS+AL AG++ ALP Sbjct: 184 LTRKLRDMIPRRWVGKTIRFCHEVNTMLAQYLRGQLLVMLILSIYYSLALALAGYNVALP 243 Query: 245 VGVLTGLLVFIPYVGFGLGLVLALIAAVLQFTGLYGLVAVAIIYGIGQVLESFILTPKLV 304 VG++TGL+ F+PY+G +GL LA+ A ++QF+G+ V + IIYG G + ++TPKLV Sbjct: 244 VGIMTGLMAFVPYIGICIGLFLAITATLVQFSGMEAWVTLGIIYGFGYSFDGLLMTPKLV 303 Query: 305 GERIGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSVVVRHLRQHYLSSSFYNS 360 G+RI LHPL VIFALLAF QLFGFVG+LLALP+SAI+SV +HLR YL S+FY + Sbjct: 304 GDRIQLHPLFVIFALLAFAQLFGFVGILLALPSSAILSVAYKHLRALYLDSNFYKN 359 >gb|AEG68180.1| permease transmembrane transport protein [Ralstonia solanacearum Po82] Length = 356 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 190/354 (53%), Positives = 266/354 (75%), Gaps = 5/354 (1%) Query: 5 LSEEQKQNLAWLIVGILLLALLVALGPMLSPFVAAGIIGYALNPGVDWIASRRIGPLRIP 64 L+++ K+ LAW+ V ++ LALL L P L+PFV A I+ Y L+PGV+W+ R+ P Sbjct: 6 LTQDTKRTLAWIAVAVIFLALLKLLAPTLTPFVFAFILSYILHPGVEWLQRHRV-----P 60 Query: 65 RFVGVTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFLSPRLHQLGIDV 124 R +GV +MVLLL + +AL+L+++ ++ R+IP ++ Q+P +L KLNA ++PRL ++G+ V Sbjct: 61 RVLGVFLMVLLLAVMAVALMLLILAVLQREIPAIREQLPGMLSKLNAAVTPRLAEMGVHV 120 Query: 125 RLDLAGIKALLTQQISTSGDELWSSVLASAKVGGTALLAWLANLLFVPMVLFYLLQDWHP 184 R D G++ LLT+Q+++S +++ S+ L +V G+A + L + VP+V+FYLL DW+ Sbjct: 121 RFDFPGLRKLLTEQLASSPEDVMSTALNYLRVSGSAAVQLLGIVFLVPIVMFYLLMDWNM 180 Query: 185 FLKRLQFMIPRRWAGRVNTMATEVDSLLGQYLRGQLLVMLVLAVYYSVALTAAGFDSALP 244 ++RL+ ++PR W G+ +ATE D LL QYLRGQ++VMLVLAVYYS L AGFD ALP Sbjct: 181 LMRRLEGVVPRHWIGKTRELATETDGLLSQYLRGQIIVMLVLAVYYSSGLALAGFDVALP 240 Query: 245 VGVLTGLLVFIPYVGFGLGLVLALIAAVLQFTGLYGLVAVAIIYGIGQVLESFILTPKLV 304 +G+ TGL VFIPY+GFG+GL LA+++A+LQF LYGL+AVA++YGIGQVLE F LTP+LV Sbjct: 241 IGIFTGLAVFIPYIGFGIGLTLAILSALLQFGNLYGLLAVAVVYGIGQVLEGFYLTPRLV 300 Query: 305 GERIGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSVVVRHLRQHYLSSSFY 358 GERIGLHPL VI ALLAFGQLFGF G+LLALP SA++ V +R +RQ YL S Y Sbjct: 301 GERIGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQIRQLYLGSKLY 354