BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0743.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774058.1| DnaA regulatory inactivator Hda protein [Her... 332 4e-89 ref|YP_001354562.1| hypothetical protein mma_2872 [Janthinobacte... 248 7e-64 ref|YP_001100878.1| putative regulator protein [Herminiimonas ar... 247 1e-63 ref|ZP_08276060.1| putative regulatory factor [Oxalobacteraceae ... 240 1e-61 ref|ZP_04579513.1| conserved hypothetical protein [Oxalobacter f... 228 7e-58 >ref|YP_003774058.1| DnaA regulatory inactivator Hda protein [Herbaspirillum seropedicae SmR1] gb|ADJ62150.1| DnaA regulatory inactivator Hda protein [Herbaspirillum seropedicae SmR1] Length = 238 Score = 332 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 185/243 (76%), Positives = 202/243 (83%), Gaps = 11/243 (4%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIA-AGQAQPTLN-----DRFIYLWGET 54 M+Q+ LDLSA QP +FD+FVTG+NAELL+RL+ +A AG Q T DRF+YLW E Sbjct: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 Query: 55 GAGKTHLLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPAS 114 GAGKTHLL ++ +A G Q +RLI AD+ D+AFDY P I YLLDD +QL Sbjct: 61 GAGKTHLLQALATRVAQEGRQ-----ARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQ 115 Query: 115 QIAAFNLFNQIREQGGCMVCTGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALL 174 QIAAFNLFNQIREQGG MVC+GTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALL Sbjct: 116 QIAAFNLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALL 175 Query: 175 QITLDRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 234 QITLDRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES Sbjct: 176 QITLDRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 235 Query: 235 GEQ 237 GEQ Sbjct: 236 GEQ 238 >ref|YP_001354562.1| hypothetical protein mma_2872 [Janthinobacterium sp. Marseille] gb|ABR90051.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 223 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 137/233 (58%), Positives = 164/233 (70%), Gaps = 11/233 (4%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAGQAQPTLNDRFIYLWGETGAGKTH 60 MRQLLLDL A++P T D+FV G NAEL Q LQ +AAGQ L++RF+YLWGE GAGKTH Sbjct: 1 MRQLLLDLPAEKPQTLDSFVVGTNAELAQLLQRLAAGQPN-GLDERFVYLWGEAGAGKTH 59 Query: 61 LLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPASQIAAFN 120 LL ++ + +R + +DA F YD A YLLDD +L P +QIAAF Sbjct: 60 LLRAMAETPH----------ARYLDSDAGTDDFLYDSATTLYLLDDSHKLTPDAQIAAFA 109 Query: 121 LFNQIREQGGCMVCTGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLDR 180 LFNQ+REQGGC++ G P L +REDLRTR GWGLIYQVH LSDDEKIAAL R Sbjct: 110 LFNQVREQGGCLLAAGNAAPASLTVREDLRTRFGWGLIYQVHGLSDDEKIAALTHAAGAR 169 Query: 181 GLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQE 233 GL + P V+ Y++TH+ RDM SLS MLDALD+YSL TKR ITLPLLRELLQ++ Sbjct: 170 GLTLSPGVLPYLITHFARDMRSLSAMLDALDQYSLETKRPITLPLLRELLQRQ 222 >ref|YP_001100878.1| putative regulator protein [Herminiimonas arsenicoxydans] emb|CAL62757.1| Conserved hypothetical protein, putative DNA replication initiation-like ATPase [Herminiimonas arsenicoxydans] Length = 227 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 136/234 (58%), Positives = 161/234 (68%), Gaps = 11/234 (4%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAGQAQPTLNDRFIYLWGETGAGKTH 60 MRQLLLDL A++P T +FV G NAEL+ LQ +A GQ L++RF+YLWG GAGKTH Sbjct: 1 MRQLLLDLPAEKPQTLTSFVVGANAELIHLLQRLAQGQPG-GLDERFVYLWGGAGAGKTH 59 Query: 61 LLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPASQIAAFN 120 LL ++ A + IP DA AF Y PA YLLDD +L P +QIAAF Sbjct: 60 LLRAL----------ASADTTLYIPGDAGADAFAYQPATTLYLLDDSHKLSPEAQIAAFA 109 Query: 121 LFNQIREQGGCMVCTGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLDR 180 LFNQ+REQGGC++ G P L +REDLRTR GWGLIYQVH LSD+EKIAAL R Sbjct: 110 LFNQVREQGGCLLAAGNAAPATLTVREDLRTRFGWGLIYQVHGLSDEEKIAALTHAAEAR 169 Query: 181 GLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 234 GL + P V+ Y+L+H+ RDM SLS MLDALD YSL TKR ITLPLLRELLQ+E+ Sbjct: 170 GLMLSPGVLPYLLSHFARDMRSLSAMLDALDEYSLETKRPITLPLLRELLQREN 223 >ref|ZP_08276060.1| putative regulatory factor [Oxalobacteraceae bacterium IMCC9480] gb|EGF30464.1| putative regulatory factor [Oxalobacteraceae bacterium IMCC9480] Length = 227 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 131/234 (55%), Positives = 160/234 (68%), Gaps = 11/234 (4%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAGQAQPTLNDRFIYLWGETGAGKTH 60 MRQ+LLDL ++P D F G+N ELL L A G P L+ RF+Y WGE GAGK+H Sbjct: 1 MRQMLLDLPGEKPQNLDNFEPGRNTELLALLSQHAYGDKLP-LSARFVYCWGEAGAGKSH 59 Query: 61 LLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPASQIAAFN 120 LLH++ +RLI D+ +AF + P I YLLDDC++L QIAAF Sbjct: 60 LLHAL----------NTTASTRLIGPDSPAAAFIHSPDIGLYLLDDCDRLSDELQIAAFG 109 Query: 121 LFNQIREQGGCMVCTGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLDR 180 LFNQIRE GG ++ +G LPP RL+LREDLRTRLGWGLIY+VH L+DDEKIAAL R Sbjct: 110 LFNQIREYGGALISSGALPPARLDLREDLRTRLGWGLIYEVHGLTDDEKIAALTLAARTR 169 Query: 181 GLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 234 G + V+ Y++TH+RRDM SLS MLD LD+YSL TKR +TLPLLRELLQ+ES Sbjct: 170 GFALATGVLPYLITHFRRDMRSLSAMLDELDQYSLETKRPVTLPLLRELLQRES 223 >ref|ZP_04579513.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gb|EEO30486.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 224 Score = 228 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 121/233 (51%), Positives = 158/233 (67%), Gaps = 14/233 (6%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAGQAQPTLNDRFIYLWGETGAGKTH 60 M+QLLL+L P+ DT++TGQN E++ L++IA T + F+YLWG+ GKTH Sbjct: 1 MQQLLLNLDTGNAPSLDTYLTGQNGEVVHLLREIA----YRTSREHFVYLWGDNATGKTH 56 Query: 61 LLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPASQIAAFN 120 LL + L +PA R IP+DA ++ F Y P YLLDDCE+L QIAAFN Sbjct: 57 LLKA-LSQFSPA---------RYIPSDAPETDFSYSPQCNLYLLDDCERLDSQKQIAAFN 106 Query: 121 LFNQIREQGGCMVCTGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLDR 180 LFNQ+RE G M+ +G P L+LR+DL++RL WGL+YQ+ LSD+EK+AAL + R Sbjct: 107 LFNQVRENNGYMITSGPCTPLALDLRDDLKSRLCWGLVYQIKSLSDEEKMAALNEQARQR 166 Query: 181 GLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQE 233 G I P V+ Y++THY+RDM SLS +LDALDRYSL TKR ITLPLL +LLQQ+ Sbjct: 167 GFTISPGVLPYLITHYQRDMHSLSMILDALDRYSLQTKRTITLPLLHDLLQQK 219