BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0741.p (470 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymera... 726 0.0 ref|YP_004754486.1| poly(A) polymerase [Collimonas fungivorans T... 711 0.0 ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Ma... 702 0.0 ref|YP_001100880.1| poly(A) polymerase I [Herminiimonas arsenico... 689 0.0 ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacteriu... 681 0.0 >ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum seropedicae SmR1] gb|ADJ62148.1| tRNA nucleotidyltransferase/poly(A) polymerase protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 390/453 (86%), Positives = 404/453 (89%), Gaps = 22/453 (4%) Query: 1 MIKKFIRSFLGKKKELDTT----------------------EPTVLSQKQHGIDLQLVSP 38 MIKK IRS LG+ K EP VL K+HGID LVSP Sbjct: 1 MIKKLIRSILGRGKTAAAAASAEPPAPARKTRAKAGADGKIEPDVLGPKEHGIDPSLVSP 60 Query: 39 NAIRVTQTLQDAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRF 98 NA+RVTQTLQ+AGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRF Sbjct: 61 NAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRF 120 Query: 99 QIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDP 158 QIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDP Sbjct: 121 QIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDP 180 Query: 159 ASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIR 218 ASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIR Sbjct: 181 ASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIR 240 Query: 219 VMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV 278 VMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV Sbjct: 241 VMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV 300 Query: 279 SLALANTDARVKEGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQ 338 +LALA+TDARVK+GKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQ Sbjct: 301 TLALADTDARVKQGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQ 360 Query: 339 TEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCASGEIDAE 398 TEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRC SGE+DAE Sbjct: 361 TEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSGELDAE 420 Query: 399 LGDWWTDFMEADSSGRESLLARKPTVSSAAGAG 431 LG+WW F+ + RE L+ARKP ++ AG Sbjct: 421 LGEWWEAFIAGTGAEREELIARKPADAAGVAAG 453 >ref|YP_004754486.1| poly(A) polymerase [Collimonas fungivorans Ter331] gb|AEK63663.1| Poly(A) polymerase [Collimonas fungivorans Ter331] Length = 463 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 373/457 (81%), Positives = 409/457 (89%), Gaps = 10/457 (2%) Query: 1 MIKKFIRSFLGKKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQDAGYKAFIVGGA 60 MIKK IRS LGKKK+ D T+P +L KQHGI+ QLVSPNA+RVT+TLQD G+KAFIVGGA Sbjct: 1 MIKKLIRSILGKKKK-DPTQPLILGPKQHGINPQLVSPNAVRVTKTLQDNGFKAFIVGGA 59 Query: 61 VRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTFRGASA 120 VRDLLLG+KPKDFDVATNATPEQVK+LFRRAFIIG+RFQIVHVMFGQELIEVTTFRGAS+ Sbjct: 60 VRDLLLGVKPKDFDVATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQELIEVTTFRGASS 119 Query: 121 EAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAVLDYHGGIADIRDKKLRI 180 + +PKDEHGRVLRDNTFGEQHEDA RRDFTINAMYYDPA+++VLDYHGGI DIR K LRI Sbjct: 120 DGSPKDEHGRVLRDNTFGEQHEDAVRRDFTINAMYYDPATESVLDYHGGIDDIRAKTLRI 179 Query: 181 IGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIRVMAPLIDNVPAARVFDEMLKLL 240 IGEPEAR+REDP+RMLR+VRFAAKLKFTIDPA+ API VMA LIDNVPAARVFDEMLKLL Sbjct: 180 IGEPEARFREDPIRMLRIVRFAAKLKFTIDPATRAPIPVMAALIDNVPAARVFDEMLKLL 239 Query: 241 MSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVSLALANTDARVKEGKGVSPGFL 300 MSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV+LALANTD RV++GK VSPGFL Sbjct: 240 MSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVTLALANTDVRVQQGKPVSPGFL 299 Query: 301 FASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQTEKLALQRKIASDMRDIWAMQP 360 FASLLWHQVLEKW AY+AAGE+PIPALHLAADDVL+AQT+KLALQRKIASDMRDIWAMQP Sbjct: 300 FASLLWHQVLEKWTAYKAAGEFPIPALHLAADDVLEAQTDKLALQRKIASDMRDIWAMQP 359 Query: 361 RFERRVGKAPYKLLEHLRLRAGFDFLLLRCASGEIDAELGDWWTDFMEADSSGRESLLAR 420 RFERR GKAPYKLLEHLRLRAG+DFLLLRCASGEID+E+G+WWT FME D S RE LLA+ Sbjct: 360 RFERRAGKAPYKLLEHLRLRAGYDFLLLRCASGEIDSEIGEWWTGFMEGDGSERELLLAQ 419 Query: 421 KPTVSSAAGAG---------SSGPAGASTGPAPGAPG 448 KP V++ A SG G +TG + G G Sbjct: 420 KPKVAAEAAPAKKRPRRRGSRSGAKGVNTGSSAGGRG 456 >ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Marseille] gb|ABR89711.1| poly(A) polymerase [Janthinobacterium sp. Marseille] Length = 455 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 362/429 (84%), Positives = 398/429 (92%), Gaps = 1/429 (0%) Query: 1 MIKKFIRSFLG-KKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQDAGYKAFIVGG 59 MIKK IR LG K+K DTT+P VL+ K+H ID +LVS NA+RVT TLQ AG+KAF+VGG Sbjct: 1 MIKKLIRRILGTKQKTGDTTQPVVLTAKEHRIDPKLVSANAVRVTSTLQQAGFKAFLVGG 60 Query: 60 AVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTFRGAS 119 AVRDLLLG+KPKDFD+ATNATPEQVK+LFRRAFIIG+RFQIVHVMFGQ+L+EVTTFRGAS Sbjct: 61 AVRDLLLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQDLLEVTTFRGAS 120 Query: 120 AEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAVLDYHGGIADIRDKKLR 179 EAAPKDEHGRVLRDNTFGEQHEDA RRDFTINAMYYDPA+Q VLDYHGG+ADIR+K LR Sbjct: 121 TEAAPKDEHGRVLRDNTFGEQHEDALRRDFTINAMYYDPATQTVLDYHGGMADIRNKTLR 180 Query: 180 IIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIRVMAPLIDNVPAARVFDEMLKL 239 IIG PEARYREDPVRMLRVVRFAAKL F+IDP +SAPIRVMAPLI+NVPAARVFDEMLKL Sbjct: 181 IIGVPEARYREDPVRMLRVVRFAAKLNFSIDPDTSAPIRVMAPLINNVPAARVFDEMLKL 240 Query: 240 LMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVSLALANTDARVKEGKGVSPGF 299 LMSG ALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV LALA+TD RVK+GK VSPGF Sbjct: 241 LMSGSALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVRLALASTDERVKQGKPVSPGF 300 Query: 300 LFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQTEKLALQRKIASDMRDIWAMQ 359 LFASLLWHQVLEKW+AYQAAGEYPIPALHLAADDVL+ QT+KLALQRKIASDMRDIWAMQ Sbjct: 301 LFASLLWHQVLEKWKAYQAAGEYPIPALHLAADDVLNTQTDKLALQRKIASDMRDIWAMQ 360 Query: 360 PRFERRVGKAPYKLLEHLRLRAGFDFLLLRCASGEIDAELGDWWTDFMEADSSGRESLLA 419 PRFERR+GK+PYKLLEHLR+RAG+DFLLLRCASGEID+E+G+WWT FMEAD GRE+LLA Sbjct: 361 PRFERRIGKSPYKLLEHLRMRAGYDFLLLRCASGEIDSEIGEWWTAFMEADGPGREALLA 420 Query: 420 RKPTVSSAA 428 +KP ++ A Sbjct: 421 KKPGSTAEA 429 >ref|YP_001100880.1| poly(A) polymerase I [Herminiimonas arsenicoxydans] emb|CAL62759.1| Poly(A) polymerase [Herminiimonas arsenicoxydans] Length = 453 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 354/429 (82%), Positives = 390/429 (90%), Gaps = 1/429 (0%) Query: 1 MIKKFIRSFLG-KKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQDAGYKAFIVGG 59 MIKKFIR LG K+K D T+P L+ ++H ID +LVS NAIRVT TLQ+AG+KAF+VGG Sbjct: 1 MIKKFIRRILGTKQKTGDHTQPVTLTAQEHRIDPKLVSANAIRVTSTLQEAGFKAFLVGG 60 Query: 60 AVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTFRGAS 119 AVRDLLLG+KPKDFD+ATNATPEQVK+LFRRAFIIG+RFQIVHVMFGQ+L+EVTTFRG+S Sbjct: 61 AVRDLLLGVKPKDFDIATNATPEQVKKLFRRAFIIGKRFQIVHVMFGQDLLEVTTFRGSS 120 Query: 120 AEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAVLDYHGGIADIRDKKLR 179 ++ APKDEHGRVLRDNTFGEQHEDA RRDFTINAMYYDPA+Q VLDYHGGIADIR + LR Sbjct: 121 SDGAPKDEHGRVLRDNTFGEQHEDALRRDFTINAMYYDPATQTVLDYHGGIADIRTRTLR 180 Query: 180 IIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIRVMAPLIDNVPAARVFDEMLKL 239 IIG PEARYREDPVR+LRVVRFAAKL F I P +SAPI VMAPLI+NVP ARVFDEMLKL Sbjct: 181 IIGVPEARYREDPVRLLRVVRFAAKLNFAIAPDTSAPIAVMAPLINNVPTARVFDEMLKL 240 Query: 240 LMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVSLALANTDARVKEGKGVSPGF 299 LMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV LALA+TD RVK+GK VSPGF Sbjct: 241 LMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVRLALASTDERVKQGKPVSPGF 300 Query: 300 LFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQTEKLALQRKIASDMRDIWAMQ 359 LFASLLWHQVLEKW AYQAAGEYPIPALHLAADDVL+ QT+KLALQRKIASDMRDIWAMQ Sbjct: 301 LFASLLWHQVLEKWNAYQAAGEYPIPALHLAADDVLNTQTDKLALQRKIASDMRDIWAMQ 360 Query: 360 PRFERRVGKAPYKLLEHLRLRAGFDFLLLRCASGEIDAELGDWWTDFMEADSSGRESLLA 419 PRF+RRVGK PYKLLEHLRLRAG+DFLLLRCASGEID+E+G+WWT F+ AD GRE LLA Sbjct: 361 PRFDRRVGKTPYKLLEHLRLRAGYDFLLLRCASGEIDSEIGEWWTAFIAADGPGREELLA 420 Query: 420 RKPTVSSAA 428 +KP ++ A Sbjct: 421 KKPATANEA 429 >ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30466.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480] Length = 455 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 356/431 (82%), Positives = 387/431 (89%), Gaps = 1/431 (0%) Query: 1 MIKKFIRSFLGKK-KELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQDAGYKAFIVGG 59 MI KF R LG K K +D + P +LS K+HGID +LVS NAIRVTQ LQ AG+KAF+VGG Sbjct: 1 MITKFFRRILGSKSKPIDRSIPVMLSAKEHGIDPKLVSSNAIRVTQGLQQAGFKAFLVGG 60 Query: 60 AVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTFRGAS 119 AVRDLLLGIKPKDFD+ATNATPEQV++LFRRAFIIGRRFQIVHVMFGQ+L+EVTTFRGAS Sbjct: 61 AVRDLLLGIKPKDFDIATNATPEQVRKLFRRAFIIGRRFQIVHVMFGQDLLEVTTFRGAS 120 Query: 120 AEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAVLDYHGGIADIRDKKLR 179 +AAPKDEHGRVLRDNTFGEQHEDA RRDFTINAMYYDP +Q VLDYHGG+ADIR+K LR Sbjct: 121 VDAAPKDEHGRVLRDNTFGEQHEDAIRRDFTINAMYYDPDTQTVLDYHGGMADIRNKTLR 180 Query: 180 IIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIRVMAPLIDNVPAARVFDEMLKL 239 IIG PE RYREDPVR+LRVVRFAAKL FTID A++API+ MAPLI+NVPAARVFDEMLKL Sbjct: 181 IIGVPEERYREDPVRLLRVVRFAAKLDFTIDAATAAPIKTMAPLINNVPAARVFDEMLKL 240 Query: 240 LMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVSLALANTDARVKEGKGVSPGF 299 LMSGHA+ACL LRKEGLHHGLLPLLDVVLEQPLGEKFV LALA+TDARVK+GK VSPGF Sbjct: 241 LMSGHAMACLHHLRKEGLHHGLLPLLDVVLEQPLGEKFVRLALASTDARVKQGKPVSPGF 300 Query: 300 LFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQTEKLALQRKIASDMRDIWAMQ 359 LFASLLWHQVLEKW AYQAAGE IPALHLAADDVLD+QTEKL+LQRKIASDMRDIWAMQ Sbjct: 301 LFASLLWHQVLEKWTAYQAAGEASIPALHLAADDVLDSQTEKLSLQRKIASDMRDIWAMQ 360 Query: 360 PRFERRVGKAPYKLLEHLRLRAGFDFLLLRCASGEIDAELGDWWTDFMEADSSGRESLLA 419 PRFERR GKAPYKLLE+LRLRAG+DFLLLRCASGEIDAELG+WWTDFME D RE L Sbjct: 361 PRFERRTGKAPYKLLENLRLRAGYDFLLLRCASGEIDAELGEWWTDFMEGDIGAREQLQT 420 Query: 420 RKPTVSSAAGA 430 +KP S +GA Sbjct: 421 QKPRSSDTSGA 431