BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0739.p (420 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774054.1| response regulator [Herbaspirillum seropedic... 700 0.0 ref|YP_004846744.1| response regulator receiver modulated diguan... 414 e-113 ref|YP_004235926.1| response regulator receiver modulated diguan... 397 e-108 ref|ZP_03698247.1| response regulator receiver modulated diguany... 377 e-102 ref|ZP_08403124.1| response regulator receiver modulated diguany... 363 4e-98 >ref|YP_003774054.1| response regulator [Herbaspirillum seropedicae SmR1] gb|ADJ62146.1| response regulator ( EAL domain) protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 372/420 (88%), Positives = 392/420 (93%) Query: 1 MPLENLNELIESALVVDDSALQRQHSVSLLQDLGVDLIYEAGNGNEALDLLALLKLPPGL 60 MP +NLNELI+SALVVDDSA+QRQHSV LLQ LG DLIYEAGNGNEALDLL LLKLPP L Sbjct: 1 MPADNLNELIKSALVVDDSAVQRQHSVQLLQQLGADLIYEAGNGNEALDLLGLLKLPPSL 60 Query: 61 AVIDLEMPGMDGIELIQQLQQKGIDIPLIVASSRETSLLLSVETMIQALGMNLIGVLQKP 120 V+DLEMPGMDGIELIQQLQQKGID+PLIVASSRETSLLLSVETMI ALGMNLIGVLQKP Sbjct: 61 MVVDLEMPGMDGIELIQQLQQKGIDVPLIVASSRETSLLLSVETMIHALGMNLIGVLQKP 120 Query: 121 LNQGQLRTALQSFRPRGGGAHADDDPQPSMCESDLGTAIGGGQVLPYFQPKVDVQTGILK 180 LNQ QLR AL+SFRP G D DPQPSMCE DLG AI GGQVLPYFQPKVDVQTGILK Sbjct: 121 LNQHQLRAALESFRPHGTEHQPDHDPQPSMCEHDLGAAIEGGQVLPYFQPKVDVQTGILK 180 Query: 181 GVEALARWVHPERGMIPPDRFIPLAEQCGLIHDLTISMMDQSMAQAAVWHSRGLAIKVAV 240 GVEALARW+HPERGM+ PDRFIPLAEQCGLIH LT++MMDQ+M QAA+WHSRGLAIKVAV Sbjct: 181 GVEALARWIHPERGMVSPDRFIPLAEQCGLIHPLTLAMMDQAMGQAAIWHSRGLAIKVAV 240 Query: 241 NLSPLSLEQPDFLHRILELVDKHALPAENVVLEITESSVVAHKGNSLGMLARLRLKGFGL 300 NLSPL LE+PDFLHRILELVDKHALPAE+VVLEITESSVVAHKGNSLGMLARLRLKGFGL Sbjct: 241 NLSPLLLEKPDFLHRILELVDKHALPAEHVVLEITESSVVAHKGNSLGMLARLRLKGFGL 300 Query: 301 SIDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAE 360 SIDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAE Sbjct: 301 SIDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAE 360 Query: 361 GVETMEDWRLLQDFGCSLGQGYLIGKPMPANELPLWLKGHHRRLGELRPLGKGAATGGSV 420 GVETMEDWRLLQDFGCSLGQGYLIGKPMPA+ELPLWLKGHHRRL ELRP+ +G A+G ++ Sbjct: 361 GVETMEDWRLLQDFGCSLGQGYLIGKPMPAHELPLWLKGHHRRLHELRPVARGTASGSAL 420 >ref|YP_004846744.1| response regulator receiver modulated diguanylate phosphodiesterase [Pseudogulbenkiania sp. NH8B] dbj|BAK76330.1| response regulator receiver modulated diguanylate phosphodiesterase [Pseudogulbenkiania sp. NH8B] Length = 409 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 213/397 (53%), Positives = 282/397 (71%), Gaps = 3/397 (0%) Query: 10 IESALVVDDSALQRQHSVSLLQDLGVDLIYEAGNGNEALDLLALLKLPPGLAVIDLEMPG 69 +E+ L+VDDS +QR H V LL+ G+ I EA +GN+AL+LL+ L P L V+DLEMPG Sbjct: 6 VETVLIVDDSLVQRLHMVGLLRQCGIHGILEAVDGNQALELLSALDTLPHLIVVDLEMPG 65 Query: 70 MDGIELIQQLQQKGIDIPLIVASSRETSLLLSVETMIQALGMNLIGVLQKPLNQGQLRTA 129 MDG+E I Q+ ++ + PL+++S+R+ SL+ SVE M QAL + ++ +KPL + L Sbjct: 66 MDGVEFILQMMKRNVMAPLVISSNRDLSLICSVENMAQALEIPILAAWKKPLTKQHLAEI 125 Query: 130 LQSFRPRGGGAHADDDPQPSMCES---DLGTAIGGGQVLPYFQPKVDVQTGILKGVEALA 186 L R +H+ + + +L AI Q+LPY+QP++D+++G + GVE LA Sbjct: 126 LHHSPDRPPPSHSTPETHKEASSTGAHELALAISRHQLLPYYQPQIDLKSGTITGVEVLA 185 Query: 187 RWVHPERGMIPPDRFIPLAEQCGLIHDLTISMMDQSMAQAAVWHSRGLAIKVAVNLSPLS 246 RW H E+G IPPD FIPLAE+ LIHDLT+ + Q+ AQAA W G+ + VAVNLSP Sbjct: 186 RWPHAEKGFIPPDHFIPLAEKHRLIHDLTLEIAGQAFAQAAHWRRSGVHLTVAVNLSPRL 245 Query: 247 LEQPDFLHRILELVDKHALPAENVVLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYG 306 L+ PDF+ I L+ ++ LPAE V+ E+TESS+ A G +L LARLRLKGFGLSIDDYG Sbjct: 246 LDLPDFVSEIDALLQQYQLPAEQVIWEVTESSLAADLGIALANLARLRLKGFGLSIDDYG 305 Query: 307 TGFSSMQQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAEGVETME 366 TGFSSMQQL+RIPFTELKIDRSFVH AH R++LRVILQSALDMA ++ LVTVAEG+ET+E Sbjct: 306 TGFSSMQQLSRIPFTELKIDRSFVHRAHQREHLRVILQSALDMAHKMSLVTVAEGIETLE 365 Query: 367 DWRLLQDFGCSLGQGYLIGKPMPANELPLWLKGHHRR 403 DW+LL++FGC+L QGY I KPMP W+K + R Sbjct: 366 DWKLLREFGCNLAQGYFIAKPMPGETFTGWVKTQNTR 402 >ref|YP_004235926.1| response regulator receiver modulated diguanylate phosphodiesterase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47359.1| response regulator receiver modulated diguanylate phosphodiesterase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 410 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 215/398 (54%), Positives = 276/398 (69%), Gaps = 5/398 (1%) Query: 12 SALVVDDSALQRQHSVSLLQDLGVDLIYEAGNGNEALDLLALLKLPPGLAVIDLEMPGMD 71 S LVVDDS QRQH+V L DLG+ + EA +G AL+++A + P L V+DLEMP MD Sbjct: 15 SVLVVDDSTPQRQHAVRLCHDLGIGQVLEACHGRHALEVIAAMDPQPSLVVVDLEMPEMD 74 Query: 72 GIELIQQLQQKGIDIPLIVASSRETSLLLSVETMIQALGMNLIGVLQKPLNQGQLRTALQ 131 GIELI+ LQQ+G+ IP+++ S+ +LL SV Q+LG +++ L KPL G L+ L+ Sbjct: 75 GIELIEALQQQGLRIPILLLSAHGDALLDSV----QSLGTSVVRGLHKPLASGDLQAVLE 130 Query: 132 S-FRPRGGGAHADDDPQPSMCESDLGTAIGGGQVLPYFQPKVDVQTGILKGVEALARWVH 190 P A P+ + + L AI G + P+FQPK D +TG+L+GVEALARW H Sbjct: 131 EVLSPSAPAADRRRAPRMPIDAAMLEQAIREGGITPHFQPKADTRTGMLRGVEALARWNH 190 Query: 191 PERGMIPPDRFIPLAEQCGLIHDLTISMMDQSMAQAAVWHSRGLAIKVAVNLSPLSLEQP 250 P GM+PPD FIPLAE GLIH LT+SMM++S Q A W SRG+ + +++NLSP L P Sbjct: 191 PVLGMVPPDEFIPLAESAGLIHALTLSMMERSFLQCAAWQSRGMRLTLSINLSPQLLALP 250 Query: 251 DFLHRILELVDKHALPAENVVLEITESSVVAHKGNSLGMLARLRLKGFGLSIDDYGTGFS 310 D ++ I ++ L ++LE+TE S+V + L RLRLKGFGLSIDDYGTGFS Sbjct: 251 DIVNEICARQLRYGLAPSQLMLEVTEGSMVETSSAAHSALVRLRLKGFGLSIDDYGTGFS 310 Query: 311 SMQQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAEGVETMEDWRL 370 S+QQL+RIPF+ELKIDRSFVHGAH RK+LRVIL+SALD+A+RL L TVAEGVE +EDWRL Sbjct: 311 SLQQLSRIPFSELKIDRSFVHGAHRRKSLRVILESALDLARRLNLSTVAEGVEHLEDWRL 370 Query: 371 LQDFGCSLGQGYLIGKPMPANELPLWLKGHHRRLGELR 408 LQDFGC+ QG+LI K MP +LP W + H RL LR Sbjct: 371 LQDFGCTSAQGWLIAKAMPGEDLPTWNRTHRTRLDALR 408 >ref|ZP_03698247.1| response regulator receiver modulated diguanylate phosphodiesterase [Lutiella nitroferrum 2002] gb|EEG08989.1| response regulator receiver modulated diguanylate phosphodiesterase [Lutiella nitroferrum 2002] Length = 369 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 193/361 (53%), Positives = 256/361 (70%), Gaps = 3/361 (0%) Query: 46 EALDLLALLKLPPGLAVIDLEMPGMDGIELIQQLQQKGIDIPLIVASSRETSLLLSVETM 105 +AL+LLA L P L V+DLEMPGMDG+E I Q+ ++ + PL+++S+R+ SL+ SVE M Sbjct: 2 QALELLAGLDTLPHLIVVDLEMPGMDGVEFILQMMKRNVMAPLVISSNRDLSLICSVENM 61 Query: 106 IQALGMNLIGVLQKPLNQGQLRTALQSFRPRGGGAHADDDPQPSMCES---DLGTAIGGG 162 ALG+ ++ +KPL + L L R + + + + +L AI Sbjct: 62 AHALGIPILAAWKKPLTKQHLAEILHHSPDRPPPSPSAPETHKEASSTGAHELALAISRH 121 Query: 163 QVLPYFQPKVDVQTGILKGVEALARWVHPERGMIPPDRFIPLAEQCGLIHDLTISMMDQS 222 Q+LPY+QP++D+++G + GVE LARW H E+G IPPD FIPLAE+ LIHDLT+ + Q+ Sbjct: 122 QLLPYYQPQIDLKSGTITGVEVLARWPHAEKGFIPPDHFIPLAEKHRLIHDLTLEIAGQA 181 Query: 223 MAQAAVWHSRGLAIKVAVNLSPLSLEQPDFLHRILELVDKHALPAENVVLEITESSVVAH 282 AQAA W G+ + VAVNLSP L+ PDF+ + L+ ++ LPA V+ E+TESS+ A Sbjct: 182 FAQAAHWRRSGVHLTVAVNLSPRLLDLPDFVSEVDALLQQYQLPAAQVIWEVTESSLAAD 241 Query: 283 KGNSLGMLARLRLKGFGLSIDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHDRKNLRVI 342 G +L LARLRLKGFGLSIDDYGTGFSSMQQL+RIPFTELKIDRSFVH AH R++LRVI Sbjct: 242 LGIALANLARLRLKGFGLSIDDYGTGFSSMQQLSRIPFTELKIDRSFVHRAHQREHLRVI 301 Query: 343 LQSALDMAQRLELVTVAEGVETMEDWRLLQDFGCSLGQGYLIGKPMPANELPLWLKGHHR 402 LQSALDMA ++ LVTVAEG+ET+EDW+LL++FGC+L QGY I KPMP+ W+K + Sbjct: 302 LQSALDMAHKMSLVTVAEGIETLEDWKLLREFGCNLAQGYFIAKPMPSETFTGWVKTQNT 361 Query: 403 R 403 R Sbjct: 362 R 362 >ref|ZP_08403124.1| response regulator receiver modulated diguanylate phosphodiesterase [Rubrivivax benzoatilyticus JA2] gb|EGJ11457.1| response regulator receiver modulated diguanylate phosphodiesterase [Rubrivivax benzoatilyticus JA2] Length = 411 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 200/415 (48%), Positives = 271/415 (65%), Gaps = 18/415 (4%) Query: 8 ELIESALVVDDSALQRQHSVSLLQDLGVDLIYEAGNGNEALDLLALLKLPPGLAVIDLEM 67 +++ S LVVDDS +QR+H +L ++LGV + E G +AL+ L L+ PP ++DLEM Sbjct: 6 DVVASVLVVDDSEVQREHVATLCRELGVSRVDEVSGGEQALERLRALQAPPQAVIVDLEM 65 Query: 68 PGMDGIELIQQLQQKGIDIPLIVASSRETSLLLSVETMIQALGMNLIGVLQKPLNQGQLR 127 PGMDGIELI+ + + G +PL+V S+ E +L+ +VE + + +GM ++ L+KP+ L Sbjct: 66 PGMDGIELIEAMYRLGHLLPLVVVSAHEGALIHTVEALAREIGMPVLAALRKPIAAEVLA 125 Query: 128 TALQSFRPRGGGAHADDDPQPSMCE-------SDLGTAIGGGQVLPYFQPKVDVQTGILK 180 L+ DD PQ DL AIG G + +FQPKV V+TG+L+ Sbjct: 126 DVLRR----------DDFPQSPRAAPVALPPAEDLARAIGHGDIAVHFQPKVCVRTGLLR 175 Query: 181 GVEALARWVHPERGMIPPDRFIPLAEQCGLIHDLTISMMDQSMAQAAVWHSRGLAIKVAV 240 GVEALARW HP+ G +P RF+ LAE GLI +L+ ++++ ++ A W SRGL + +A+ Sbjct: 176 GVEALARWRHPQAGDVPAGRFVELAEARGLIRELSFAVIETALGHLAHWCSRGLRLSLAL 235 Query: 241 NLSPLSLEQPDFLHRILELVDKHALPAENVVLEITESSVVAHKGNSLGMLARLRLKGFGL 300 NLSP L D + ++ V +H L VVLE+TESSVVA +G+L RLRLKGFGL Sbjct: 236 NLSPRLLTVTDLVAELVARVREHGLEPSQVVLELTESSVVAAYDGGIGVLTRLRLKGFGL 295 Query: 301 SIDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAE 360 SIDDYGTG++SM QLARIPF+ELK+DR FVH A +R R++L+SAL+ A+R ELV+VAE Sbjct: 296 SIDDYGTGYASMSQLARIPFSELKVDRQFVHDASERHAQRMLLESALETARRFELVSVAE 355 Query: 361 GVETMEDWRLLQDFGCSLGQGYLIGKPMPANELPLWLKGHHRRLGELR-PLGKGA 414 GVE DWRLLQ GC + QGYLI +PM A L WL+ H RL ELR P GA Sbjct: 356 GVEREADWRLLQSLGCDVAQGYLIARPMAAEALQPWLRNHQTRLAELRSPASPGA 410