BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0735.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_434866.1| chemotaxis protein, stimulates methylation of M... 130 7e-29 ref|ZP_07775695.1| chemoreceptor glutamine deamidase [Pseudomona... 128 4e-28 ref|YP_002354976.1| CheD, stimulates methylation of MCP protein ... 125 4e-27 ref|YP_284373.1| chemotaxis protein [Dechloromonas aromatica RCB... 124 1e-26 ref|YP_522184.1| CheD, stimulates methylation of MCP proteins [R... 122 2e-26 >ref|YP_434866.1| chemotaxis protein, stimulates methylation of MCP protein [Hahella chejuensis KCTC 2396] gb|ABC30441.1| Chemotaxis protein, stimulates methylation of MCP protein [Hahella chejuensis KCTC 2396] Length = 319 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 100/156 (64%), Gaps = 10/156 (6%) Query: 5 IFVNLGEVYFGQGDLQVETLLGSCVAITLWHPVRHFGGLCHFVLPERRYAVRPDANGEHL 64 ++++ GE YF D +++TLLGSCVA+ LWHP + GG+CH++LP+R NG Sbjct: 172 VYLDPGEWYFSDADTRMKTLLGSCVAVVLWHPQKRLGGMCHYMLPQR--------NGAAS 223 Query: 65 HETPDGRYGDEALSRLLEQVRQHGTRIADYTVKVFGGGNVLGLPPTKLRIGQANADFALD 124 ++ DGRY DEA+ L++ +R+ TR +Y VK+FGG ++ L + + + + N + A Sbjct: 224 NQGLDGRYADEAMQLLVDALRKERTRPQEYEVKIFGGSSM--LEGSSINVSKRNIEAAYR 281 Query: 125 ILRQHHIPVTAQDVAGEGYRYLRFDLNNGDVWVRRG 160 +L+QH + +D+ G +R L FD+ +GDVW+R+G Sbjct: 282 LLKQHGFRLVGEDLGGRAHRNLVFDVWSGDVWLRKG 317 Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 76/169 (44%), Gaps = 23/169 (13%) Query: 5 IFVNLGEVYFGQGDLQVETLLGSCVAITLWHPVRHFGGLCHFVLPERRYAVRPDANGEHL 64 IF++ GE+Y + D ++ +LLG ITLWHP GG+CHF R + D G Sbjct: 19 IFLDAGELYLAEADTRIRSLLGEGGVITLWHPHLKLGGMCHF----RNVRMNADEPG--- 71 Query: 65 HETPDGRYGDEALSRL-LEQVRQHGT-RIADYTVKVFGGGNVLGLPPTKLRIGQANADFA 122 T + Y D ALS L LE VR T R + + VF G + T G+ DF Sbjct: 72 GRTLNPAYADAALSLLQLEMVRAGATPRRFEAKLFVFDGPDA---DKTAKEAGKLLHDFG 128 Query: 123 LDILRQHHIPVTAQDVAGEGYRYLRFDLNNGDVWVRRGHGVSHDMEKVP 171 + H+ G L FD+ NGDVW+++ D K P Sbjct: 129 FKLTLDHN-----------GSGNLVFDVWNGDVWIQKDAPSMIDAGKAP 166 >ref|ZP_07775695.1| chemoreceptor glutamine deamidase [Pseudomonas fluorescens WH6] gb|EFQ63424.1| chemoreceptor glutamine deamidase [Pseudomonas fluorescens WH6] Length = 176 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 72/154 (46%), Positives = 89/154 (57%), Gaps = 18/154 (11%) Query: 10 GEVYFGQGDLQVETLLGSCVAITLWHPVRHFGGLCHFVLPERRYAVRPDANGEHLHETP- 68 G+V F ++ TLLGSCVA T WHP R GG+CHF+LP R H+ P Sbjct: 15 GQVSFMTRPTRLRTLLGSCVAFTFWHPQRLIGGMCHFMLPARLR-----------HDQPL 63 Query: 69 DGRYGDEALSRLLEQVRQHGTRIADYTVKVFGGGNVLG----LPPTKLRIGQANADFALD 124 DG+YGDEAL LL+ R HGT+ DY VKVFGGG + LP + N AL Sbjct: 64 DGKYGDEALELLLQHARAHGTQAQDYQVKVFGGGEMFPAQQYLPARN--VASLNIRAALA 121 Query: 125 ILRQHHIPVTAQDVAGEGYRYLRFDLNNGDVWVR 158 + HH+ +TAQD+ GYR + FDL NG+VWVR Sbjct: 122 LAEHHHLHLTAQDMGSTGYRTIVFDLWNGNVWVR 155 >ref|YP_002354976.1| CheD, stimulates methylation of MCP protein [Thauera sp. MZ1T] gb|ACK54080.1| CheD, stimulates methylation of MCP protein [Thauera sp. MZ1T] Length = 194 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 72/162 (44%), Positives = 96/162 (59%), Gaps = 13/162 (8%) Query: 2 TQRIFVNLGEVYFGQGDLQVETLLGSCVAITLWHPVRHFGGLCHFVLPERRYAVRPDANG 61 T IF+ GE +FG D ++ TLLGSCV+IT+WHP GG+CHF+LPER VR A+G Sbjct: 8 TIEIFLQPGEFWFGDRDTRIRTLLGSCVSITMWHPRLRIGGMCHFMLPER--GVRACADG 65 Query: 62 EHLHETPDGRYGDEALSRLLEQVRQHGTRIADYTVKVFGGGNVL-----GLPPTKLRIGQ 116 DGRY +A++ L ++R TR DY VK+FGGG + P L +G Sbjct: 66 ------LDGRYAGDAIALFLRELRAAHTRPQDYQVKLFGGGRMFRSRHAAGAPAALDVGT 119 Query: 117 ANADFALDILRQHHIPVTAQDVAGEGYRYLRFDLNNGDVWVR 158 N + A +LR H V A V GEG+R L FD+ +G+VW+R Sbjct: 120 RNVEAARMLLRTHGFRVRAAHVEGEGHRNLIFDIGSGEVWLR 161 >ref|YP_284373.1| chemotaxis protein [Dechloromonas aromatica RCB] sp|Q47GX8|CHED3_DECAR RecName: Full=Probable chemoreceptor glutamine deamidase CheD 3 gb|AAZ45903.1| probable chemotaxis protein [Dechloromonas aromatica RCB] Length = 170 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 10/166 (6%) Query: 3 QRIFVNLGEVYFGQGDLQVETLLGSCVAITLWHPVRHFGGLCHFVLPERRYAVRPDANGE 62 +F+N GE +FG+ + ++ TLLGSCV+ITLWHP + GG+CH++L ER+ RP Sbjct: 9 HEVFLNPGEFHFGESNTRISTLLGSCVSITLWHPRKRIGGMCHYMLTERK---RPP---- 61 Query: 63 HLHETPDGRYGDEALSRLLEQVRQHGTRIADYTVKVFGGGNVLGLPPTK-LRIGQANADF 121 + DGR+G EA L+ V GTR +Y K+FGG N+L P K + IG N Sbjct: 62 --NAALDGRFGSEAFELFLQHVAAAGTRPGEYQAKLFGGANMLTGPTGKQMDIGPRNVAL 119 Query: 122 ALDILRQHHIPVTAQDVAGEGYRYLRFDLNNGDVWVRRGHGVSHDM 167 +L +HI + + V G G R L FD+ +GDVW+ G ++ Sbjct: 120 GRQLLAANHIALMVEHVGGSGRRKLHFDVWSGDVWLAFPQGADAEI 165 >ref|YP_522184.1| CheD, stimulates methylation of MCP proteins [Rhodoferax ferrireducens T118] sp|Q220A0|CHED2_RHOFD RecName: Full=Probable chemoreceptor glutamine deamidase CheD 2 gb|ABD68653.1| CheD, stimulates methylation of MCP proteins [Rhodoferax ferrireducens T118] Length = 173 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 93/154 (60%), Gaps = 10/154 (6%) Query: 5 IFVNLGEVYFGQGDLQVETLLGSCVAITLWHPVRHFGGLCHFVLPERRYAVRPDANGEHL 64 IF+ GE + Q+ T+LGSCV+ITLWHP G + HF+LP R A +P Sbjct: 10 IFLQPGEYFVADAGYQIRTMLGSCVSITLWHPATRQGAMSHFLLPTRG-ASKPK------ 62 Query: 65 HETPDGRYGDEALSRLLEQVRQHGTRIADYTVKVFGGGNVL--GLPPTKLRIGQANADFA 122 +T D RYGDEAL +L ++++ G A K+FGGGN+ L L +GQ N + A Sbjct: 63 -QTLDARYGDEALKLMLIELQRLGIPSAQCQGKIFGGGNMFPGNLRSGALNVGQRNGEAA 121 Query: 123 LDILRQHHIPVTAQDVAGEGYRYLRFDLNNGDVW 156 L +LR+H IPV ++ + G G+R + FD++NGDVW Sbjct: 122 LTLLREHGIPVMSESLFGIGHRQIVFDVSNGDVW 155