BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0732.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774051.1| positive regulator of CheA protein activity ... 269 2e-70 ref|YP_003524207.1| CheW protein [Sideroxydans lithotrophicus ES... 173 1e-41 ref|ZP_08780704.1| CheW protein [Methylobacter tundripaludum SV9... 172 2e-41 ref|YP_003847741.1| CheW protein [Gallionella capsiferriformans ... 167 8e-40 ref|ZP_08780706.1| CheW protein [Methylobacter tundripaludum SV9... 166 1e-39 >ref|YP_003774051.1| positive regulator of CheA protein activity protein [Herbaspirillum seropedicae SmR1] gb|ADJ62143.1| positive regulator of CheA protein activity protein [Herbaspirillum seropedicae SmR1] Length = 194 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 164/182 (90%), Positives = 170/182 (93%) Query: 1 MPSVSLNGESVRKRQQEEVIESRQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDF 60 MPSVSLNGES R+R QEEV+ESRQFLTFLVG ESFAMPIASIREIIEF GLTEVPLMP F Sbjct: 1 MPSVSLNGESKRRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAF 60 Query: 61 LRGVINLRGSVVPVIDLSVRFGRAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLS 120 LRGVINLRGSVVPVIDLSVRFGRAPT+ AKRTCIIIMEL QDEQ LLLGVMVDAVSAVLS Sbjct: 61 LRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLS 120 Query: 121 IGVDHIEPRPSFGAGIRADFIEGMINVNERFIVVLDVQRVLSVDELASLLGMSAEDALGG 180 IGVD IEPRPSFGAGIRADF++ MINVNERF+VVLDV RVLSVDELASLLGMSAEDALGG Sbjct: 121 IGVDQIEPRPSFGAGIRADFVDAMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGG 180 Query: 181 VP 182 P Sbjct: 181 GP 182 >ref|YP_003524207.1| CheW protein [Sideroxydans lithotrophicus ES-1] gb|ADE11820.1| CheW protein [Sideroxydans lithotrophicus ES-1] Length = 179 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 94/166 (56%), Positives = 125/166 (75%) Query: 15 QQEEVIESRQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGSVVPV 74 + E+V +QFLTF +G+E FA+ S++EIIE+G LTEVP+MP F+RGVINLRG+VVPV Sbjct: 12 KMEQVAAVQQFLTFTLGSEMFAVGTLSVKEIIEYGQLTEVPMMPGFIRGVINLRGAVVPV 71 Query: 75 IDLSVRFGRAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLSIGVDHIEPRPSFGA 134 +DLSVRFGR T +RTCI+I+E+ ++ +GV+VDAVS VL I IEP P+FGA Sbjct: 72 LDLSVRFGRGATQVTRRTCIVIIEVPTGDEKHDIGVLVDAVSEVLEIPASEIEPPPAFGA 131 Query: 135 GIRADFIEGMINVNERFIVVLDVQRVLSVDELASLLGMSAEDALGG 180 IR DFI+GM V+ RF+++LDV +VLSVDE+ASL +S + AL Sbjct: 132 KIRTDFIQGMGKVDGRFVILLDVGKVLSVDEIASLAAVSTQGALAA 177 >ref|ZP_08780704.1| CheW protein [Methylobacter tundripaludum SV96] gb|EGW22879.1| CheW protein [Methylobacter tundripaludum SV96] Length = 185 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 86/149 (57%), Positives = 118/149 (79%) Query: 21 ESRQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGSVVPVIDLSVR 80 E +Q+LTF++ E++A+ I I+EII++G LTEVP MPDF+RGVINLRG+VVPVIDLS R Sbjct: 22 EQQQYLTFMLSGETYAIGILRIKEIIQYGQLTEVPRMPDFIRGVINLRGAVVPVIDLSAR 81 Query: 81 FGRAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLSIGVDHIEPRPSFGAGIRADF 140 FG+ PT +R CIII+E++ E+ +GVMVDAV+AVL I D IEP P+FG IRADF Sbjct: 82 FGKQPTAIGRRNCIIIIEVMMGEETQNIGVMVDAVNAVLEIPADEIEPAPTFGTNIRADF 141 Query: 141 IEGMINVNERFIVVLDVQRVLSVDELASL 169 I GM +N +F+++L++Q VLS+D++A+L Sbjct: 142 IAGMGKINGKFVIILNIQHVLSMDDMAAL 170 >ref|YP_003847741.1| CheW protein [Gallionella capsiferriformans ES-2] gb|ADL55977.1| CheW protein [Gallionella capsiferriformans ES-2] Length = 182 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 5/168 (2%) Query: 20 IESRQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGSVVPVIDLSV 79 ++ Q+LTFL+ E FA+ I +I+EIIE+G LTEVP+MP F+RGVINLRGSVVPV+DL+V Sbjct: 19 VDDHQYLTFLLSGEMFAIAILNIKEIIEYGSLTEVPMMPGFIRGVINLRGSVVPVVDLAV 78 Query: 80 RFGRAPTMEAKRTCIIIMELV-QDEQLLLLGVMVDAVSAVLSIGVDHIEPRPSFGAGIRA 138 RFGR+ T ++RTCI+I+E+ DE +GVMVD+VS VL I IEP P+FGA IR Sbjct: 79 RFGRSKTEVSRRTCIVIIEVEGSDETHQDIGVMVDSVSEVLEIPTAEIEPAPAFGAKIRV 138 Query: 139 DFIEGMINVNERFIVVLDVQRVLSVDELASLLGMSAEDALGGVPVLSA 186 DFI+GM V +F+++L+ +VLSVDEL S+LG +A GGVP LSA Sbjct: 139 DFIKGMGKVAGKFVIILNADKVLSVDEL-SMLGQAAA---GGVPELSA 182 >ref|ZP_08780706.1| CheW protein [Methylobacter tundripaludum SV96] gb|EGW22881.1| CheW protein [Methylobacter tundripaludum SV96] Length = 185 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 115/149 (77%) Query: 21 ESRQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGSVVPVIDLSVR 80 E +Q+LTF++ E++A+ I I+EII++G LTEVP MPDF+RGVINLRG+VVPVIDLS R Sbjct: 22 EQQQYLTFMLSGETYAISILRIKEIIQYGQLTEVPRMPDFIRGVINLRGAVVPVIDLSAR 81 Query: 81 FGRAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLSIGVDHIEPRPSFGAGIRADF 140 FG+ PT +R CIII+E+ + +GVMVDAV+AV+ I IEP P+FG IRADF Sbjct: 82 FGKQPTAIGRRNCIIIIEVALGAETQSVGVMVDAVNAVMEIPASEIEPAPTFGTNIRADF 141 Query: 141 IEGMINVNERFIVVLDVQRVLSVDELASL 169 I GM +N +F+++L++Q VLS+D++A+L Sbjct: 142 IAGMGKINGKFVIILNIQHVLSMDDMAAL 170