BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0731.p (621 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774050.1| methyl-accepting chemotaxis transducer trans... 885 0.0 ref|YP_003812140.1| Probable methyl-accepting chemotaxis [gamma ... 475 e-131 ref|YP_003774726.1| methyl-accepting chemotaxis domain-containin... 345 2e-92 ref|YP_003809990.1| Methyl-accepting chemotaxis protein [gamma p... 326 8e-87 ref|YP_564296.1| chemotaxis sensory transducer [Shewanella denit... 319 1e-84 >ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62142.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 513/607 (84%), Positives = 553/607 (91%), Gaps = 13/607 (2%) Query: 16 MQESMTNRMSIKQIFIWLGVVLSILVAVVISLTDTLRQANTALEQAHQSRYDSAGLANEL 75 M+E+MT+RMSIKQ+FIWL +VLSILVAVV+SLT L+ AN LE+AHQSRYDS LANEL Sbjct: 1 MRETMTHRMSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANEL 60 Query: 76 RRTTEDMTKFARAYVTTGDPNDEDRYYMILDIRNGKRARPSNYDRFNWDLVSARKLPVEA 135 RRT EDMTKFARAYVTTGDPNDEDRYYMI+DIRNGKRARPSNYDRFNWDLV+ARKL ++ Sbjct: 61 RRTAEDMTKFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDP 120 Query: 136 GAQTVPLSELMKRAGFTEQELAKMQEALKLGDQLSRIEITAFHAVKGEFDDGEGKFTVVG 195 GA VPL ELMKRAGFT++ELAKMQEALKLGDQL++IEITAFHAVKGEFDDGEGK+TV+G Sbjct: 121 GAPGVPLGELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIG 180 Query: 196 APNQAMAQELVFDQTYRALFGRVMAPINDFLRQVDERTQARVLRAGREYAELEQKIFWLL 255 APNQAMAQELVFDQTYR LFG++M+P+NDFLR VDERTQA V +AG++YAELEQKIFWLL Sbjct: 181 APNQAMAQELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLL 240 Query: 256 TASVVVLFACLGFAYRTIRSQIGGEPRDAMSVLRRVAEGDLTVIVPLRKNDKVSVLYSTQ 315 ASVVVLFACL +YR IRSQIGGEPRDAMSVLRRVAEGDLTV+VPL K DK+SVLYSTQ Sbjct: 241 AASVVVLFACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQ 300 Query: 316 QMVNKWTDVIGDVSGTASALASASEEISSSSQALSHNASQQAANVEETSASVEEITATIA 375 QM+NKWTDVIGDVSGTA++LASASE+ISSSSQALSHNA+QQAANVEETSASVEEITATIA Sbjct: 301 QMINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIA 360 Query: 376 QNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAI 435 QNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAI Sbjct: 361 QNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAI 420 Query: 436 EAARAGEHGKGFAVVAAEVRKLAERSQTAAQEIIAVAENSVGLAEKAGGLLNQMVPSIRK 495 EAARAGEHGKGFAVVAAEVRKLAERSQ+AAQEIIAVAE SVGLAEKAGGLLNQMVPSIRK Sbjct: 421 EAARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRK 480 Query: 496 TADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDL 555 TADLVQEIAAAS EQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDL Sbjct: 481 TADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDL 540 Query: 556 MRFFRVDELQKPGVRGA-AGGVPESGGRRGRRAQSAAQGGRESTRRLSMLDVDEDAPGVD 614 MRFF+V E +K R + A +P SGG+ +S RRLSMLD ED GVD Sbjct: 541 MRFFQVGEPRKNAPRASKAVPLPPSGGK------------SDSVRRLSMLDAPEDERGVD 588 Query: 615 ESSFKRF 621 ESSFKRF Sbjct: 589 ESSFKRF 595 >ref|YP_003812140.1| Probable methyl-accepting chemotaxis [gamma proteobacterium HdN1] emb|CBL46497.1| Probable methyl-accepting chemotaxis [gamma proteobacterium HdN1] Length = 619 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 305/614 (49%), Positives = 415/614 (67%), Gaps = 13/614 (2%) Query: 14 ASMQESMTNRMSIKQIFIWLGVVLSILVAVVISLTDTLRQANTALEQAHQSRYDSAGLAN 73 A M ++ MSI+++FI L + +L+A +I +T L QA+ L QA +SRY S LA+ Sbjct: 13 AYMARNLMQEMSIRKLFILLTATIFVLMAAIIGVTRLLNQAHDELSQAQESRYTSYLLAD 72 Query: 74 ELRRTTEDMTKFARAYVTTGDPNDEDRYYMILDIRNGKRARPSNYDRFNWDLVSAR-KLP 132 ELR++++D+T+ AR Y TGD E +Y ++ IR G R RP +Y R WD V+A P Sbjct: 73 ELRQSSDDLTRLARTYAVTGDERYEQQYLQVVGIRAGTRPRPQDYQRIYWDFVAANGTAP 132 Query: 133 VEAGAQTVPLSELMKRAGFTEQELAKMQEALKLGDQLSRIEITAFHAVKGEFDDGEGKFT 192 Q+ PL +LMK+AGF+++ELAK+ EA L D L + E A +AVKG FDDG G FT Sbjct: 133 RPDTTQSTPLLDLMKQAGFSKEELAKLGEAQALSDALVKTETIAINAVKGLFDDGSGHFT 192 Query: 193 VVGAPNQAMAQELVFDQTYRALFGRVMAPINDFLRQVDERTQARVLRAGREYAELEQKIF 252 V GAPN+ MA +L+ + Y A+ ++M P++DF + ++ RT VL A + LE I+ Sbjct: 193 VRGAPNREMAIDLLHNHDYHAIKAKIMKPVDDFYQLLEARTHGAVLAATEKAQRLEATIY 252 Query: 253 WLLTASVVVLFACLGFAYRTIRSQIGGEPRDAMSVLRRVAEGDLTVIVPLRKNDKVSVLY 312 LL S+++L L AYR +R Q+G EPR+ M L+ VAEG+L V + L +D SVLY Sbjct: 253 TLLGISLLLLSGALLIAYRILRVQLGSEPREVMEKLQSVAEGNLAVKIELAPHDHSSVLY 312 Query: 313 STQQMVNKWTDVIGDVSGTASALASASEEISSSSQALSHNASQQAANVEETSASVEEITA 372 + ++ V++ + I +V +++AL SA+++IS+SSQALS NAS+QAA+VEET ASVE+I+A Sbjct: 313 NLERTVSRLHETISEVHQSSAALTSAADQISTSSQALSQNASEQAASVEETGASVEQISA 372 Query: 373 TIAQNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALN 432 T+AQN+DNA T+ +AS SA A +GGEAVR V AM++IA+K+GIIDDIAYQTNLLALN Sbjct: 373 TVAQNSDNAVVTNKVASQSAKDARDGGEAVRTMVEAMRKIAAKVGIIDDIAYQTNLLALN 432 Query: 433 AAIEAARAGEHGKGFAVVAAEVRKLAERSQTAAQEIIAVAENSVGLAEKAGGLLNQMVPS 492 AAIEAARAG+HGK FAVVA EVRKLAERS+ AAQEI VA SV L E AG LL +MVP+ Sbjct: 433 AAIEAARAGDHGKSFAVVAGEVRKLAERSRVAAQEISEVAGESVNLTEHAGTLLERMVPA 492 Query: 493 IRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHL 552 I++TADLVQEI+AAS EQ+ GLEQIN A+ Q+AQ+TQ A++SE+LS+TSEEMSA A L Sbjct: 493 IQQTADLVQEISAASTEQTAGLEQINLAIAQLAQSTQSNAASSEQLSSTSEEMSALARQL 552 Query: 553 QDLMRFFRVDELQK----PGVRGAAGGVPESGGRRGRRAQSAAQGGRESTRRLSMLDVDE 608 Q+ + +F++ + P G++GG G + + R ST Sbjct: 553 QEKISYFQLSDSHHATSIPAFPGSSGGHGPFGQGLAKPNFATHAASRPST-------TPT 605 Query: 609 DAP-GVDESSFKRF 621 AP +DES F RF Sbjct: 606 QAPTKLDESGFVRF 619 >ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ62818.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 226/561 (40%), Positives = 338/561 (60%), Gaps = 20/561 (3%) Query: 16 MQESMTNRMSIKQIFIWLGVVLSILVAVVISLTDTLRQANTALEQAHQSRYDSAGLANEL 75 M+ S+ +R SI+QIFI L V+++L+ +++ + + + L A++SRY S LA EL Sbjct: 1 MKISLVSRFSIRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATEL 60 Query: 76 RRTTEDMTKFARAYVTTGDPNDEDRYYMILDIRNGKRARPSNYDRFNWDLVSAR-KLPVE 134 R++++D+T+ AR YV TGDP+ E +Y ILDIRNGK+ARP +Y R WD V+A K P Sbjct: 61 RQSSDDLTRLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRP 120 Query: 135 AGAQTVPLSELMKRAGFTEQELAKMQEALKLGDQLSRIEITAFHAVKGEFDDGEGKFTVV 194 Q V L++LM+ AGFT E+ K++EA D L + E+ A + VKG + D +G FT Sbjct: 121 DSNQHVALTDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKR 180 Query: 195 GAPNQAMAQELVFDQTYRALFGRVMAPINDFLRQVDERTQARVLRAGREYAELEQKIFWL 254 P+ A A+EL+ + Y ++M P+++F +D RT +V A + + + L Sbjct: 181 ADPDLAQARELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSL 240 Query: 255 LTASVVVLFACLGFAYRTIRSQIGGEPRDAMSVLRRVAEGDLTV-IVPLRKNDKVSVLYS 313 + ++VVL L Y IR+ + A SV RRVA GDLT I P K + +L + Sbjct: 241 IAIALVVLACTLMLVYHAIRNPLA----HAASVARRVAHGDLTAQIDPAIKGETGELLEA 296 Query: 314 TQQMVNKWTDVIGDVSGTASALASASEEISSSSQALSHNASQQAANVEETSASVEEITAT 373 M + ++ DV A + +++ EI+S + LS QQA+++EET++S+EE+T+T Sbjct: 297 LTIMQSGLQTIVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTST 356 Query: 374 IAQNADNARTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQT 426 + QNA NAR +A+ ++ A GGE V V M K+I I +ID IA+QT Sbjct: 357 VKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQT 416 Query: 427 NLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQTAAQEIIAVAENSVG-------LA 479 N+LALNAA+EAARAGE G+GFAVVA EVR LA+RS AA+EI + +NSV L Sbjct: 417 NILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLV 476 Query: 480 EKAGGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTASASEELS 539 +AG + ++V S+++ +++ I+ AS EQ++G+EQI A++QM Q TQ A+ E+ S Sbjct: 477 NEAGSTMREVVESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQAS 536 Query: 540 ATSEEMSAQAIHLQDLMRFFR 560 A SE M QA L DL+ F+ Sbjct: 537 AASESMQMQAHKLTDLVGAFK 557 >ref|YP_003809990.1| Methyl-accepting chemotaxis protein [gamma proteobacterium HdN1] emb|CBL44331.1| Methyl-accepting chemotaxis protein [gamma proteobacterium HdN1] Length = 543 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 209/351 (59%), Positives = 263/351 (74%), Gaps = 20/351 (5%) Query: 271 RTIRSQIGGEPRDAMSVLRRVAEGDLTVIVPLRKNDKVSVLYSTQQMVNKWTDVIGDVSG 330 R + QIGGEP A V++R+A GDLTV V R D SVL + M K V+ DV G Sbjct: 213 RMVVRQIGGEPSYAAEVVQRIANGDLTVDVQTRSGDTTSVLAMMRAMAEKLRSVMTDVRG 272 Query: 331 TASALASASEEISSSSQALSHNASQQAANVEETSASVEEITATIAQNADNARTTDGIASL 390 ++ +LASASE+ISSS+QALS NAS+QA+N+EETSASVEEI++T+AQNADNA+ TD IA+ Sbjct: 273 SSDSLASASEQISSSAQALSQNASEQASNIEETSASVEEISSTVAQNADNAKVTDTIATK 332 Query: 391 SASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVV 450 S+S A EGG+AV++TV AM++IASKI IIDDIAYQTNLLALNAAIEAARAG+HGKGFAVV Sbjct: 333 SSSDAREGGDAVKQTVLAMQEIASKISIIDDIAYQTNLLALNAAIEAARAGDHGKGFAVV 392 Query: 451 AAEVRKLAERSQTAAQEIIAVAENSVGLAEKAGGLLNQMVPSIRKTADLVQEIAAASAEQ 510 AAEVRKLAERSQ AA+EI VA NSV LAE+AG L++++PSI KTADLVQEI+AAS+EQ Sbjct: 393 AAEVRKLAERSQVAAREIGTVATNSVALAEQAGHRLDELLPSINKTADLVQEISAASSEQ 452 Query: 511 STGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFRVDELQKPGVR 570 ++GL QI++AV Q++QTTQMTASASE+LS+T+EEMSAQA+ LQ L+ +F++ ++ Sbjct: 453 TSGLTQISSAVAQLSQTTQMTASASEQLSSTAEEMSAQALELQQLVSYFQLGQVAAQSAA 512 Query: 571 GAAGGVPESGGRRGRRAQSAAQGGRESTRRLSMLDVDEDAPGVDESSFKRF 621 AA +GG G + + A GVDES+F RF Sbjct: 513 RAAPKPAANGGSGGMKRAANA--------------------GVDESAFTRF 543 >ref|YP_564296.1| chemotaxis sensory transducer [Shewanella denitrificans OS217] gb|ABE56573.1| chemotaxis sensory transducer [Shewanella denitrificans OS217] Length = 543 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 197/356 (55%), Positives = 265/356 (74%), Gaps = 7/356 (1%) Query: 213 ALFGRVMAPINDFLRQVDERT--QARVLRAGREYAEL--EQKIFWLLTASVVVLFACLGF 268 ++ M +ND+L ++ Q +L E + L E + + V+ +G Sbjct: 146 SMLDNAMPKLNDYLSSANDLIAFQGSILEGSAELSRLSYEDGVMAMSITGVLAFIVAIGG 205 Query: 269 AY---RTIRSQIGGEPRDAMSVLRRVAEGDLTVIVPLRKNDKVSVLYSTQQMVNKWTDVI 325 A+ ++I Q+GGEP V+ R+A GDL + V ++ ND S+L++ MVNK +++I Sbjct: 206 AFLVTKSITRQLGGEPSYVTDVVSRIANGDLQIKVDVKSNDTSSMLFAVNAMVNKLSEII 265 Query: 326 GDVSGTASALASASEEISSSSQALSHNASQQAANVEETSASVEEITATIAQNADNARTTD 385 + +A L+SASEE+S+++Q++S AS+QAA+VEETSAS+E+++A+I+QN +NA+ TD Sbjct: 266 SSIRTSADNLSSASEEVSATAQSMSQGASEQAASVEETSASIEQMSASISQNTENAKVTD 325 Query: 386 GIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGK 445 G++S +A A EGG+AV++TVAAMK IA KI IIDDIAYQTNLLALNAAIEAARAGEHGK Sbjct: 326 GMSSKAAKEADEGGKAVQQTVAAMKSIADKISIIDDIAYQTNLLALNAAIEAARAGEHGK 385 Query: 446 GFAVVAAEVRKLAERSQTAAQEIIAVAENSVGLAEKAGGLLNQMVPSIRKTADLVQEIAA 505 GFAVVAAEVRKLAERSQ AAQEI VA NSVGLAEKAG LL+++VPSI+KTADLVQEI+A Sbjct: 386 GFAVVAAEVRKLAERSQVAAQEIGGVASNSVGLAEKAGKLLDEIVPSIKKTADLVQEISA 445 Query: 506 ASAEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFRV 561 AS EQS+G QIN A+ Q++Q TQ +ASASEEL+AT+EEMS+QA LQD++ FF+V Sbjct: 446 ASEEQSSGAAQINTAMEQLSQITQQSASASEELAATAEEMSSQAELLQDVISFFKV 501