BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0730.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum ... 802 0.0 ref|YP_855578.1| chemotaxis protein CheA [Aeromonas hydrophila s... 485 e-135 ref|YP_001143003.1| chemotaxis protein CheA [Aeromonas salmonici... 480 e-133 ref|YP_004846749.1| CheA signal transduction histidine kinase [P... 473 e-131 ref|YP_004393829.1| chemotaxis protein CheA [Aeromonas veronii B... 471 e-130 >ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ62141.1| chemotaxis histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 725 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 435/515 (84%), Positives = 464/515 (90%), Gaps = 4/515 (0%) Query: 1 MDAESCYLGVEICLASDSTRQTLEDVFEFVRDDSRIDILPPQSPLADYATVLQRLAPEEA 60 MDAESCYLG+E+CLASDST QTLE+VFEFVRDDSRIDILPP++PL+ YA L RLAP++A Sbjct: 213 MDAESCYLGMEVCLASDSTLQTLENVFEFVRDDSRIDILPPRAPLSAYAERLARLAPQDA 272 Query: 61 VRLASLWRGLGLFDDAQWRCLGAIGL--KDSAAPPLLSSAIADVVQRPRPLDERRAQEQK 118 RLA+ WRGL LFD QW+ L A D+ A + A V+QRPR LDERRAQEQK Sbjct: 273 ARLAAAWRGLALFDQTQWQSLEAASATPSDALAAAVEPMAAEGVLQRPRALDERRAQEQK 332 Query: 119 FIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDSLMEQIRDAALTLR 178 FIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAID+LMEQIRDAALTLR Sbjct: 333 FIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDTLMEQIRDAALTLR 392 Query: 179 MVQINEVFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLADPLMHIVRNAIDHG 238 MVQINEVFQRFPRIVRDIARDL KDIDL MTGS+TELDKSMVERLADPLMHIVRNAIDHG Sbjct: 393 MVQINEVFQRFPRIVRDIARDLGKDIDLVMTGSDTELDKSMVERLADPLMHIVRNAIDHG 452 Query: 239 IEPAAERIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILEKAIAQGLTTPEAE 298 IEPAAER+AAGKPAKASL+LNA+HESGSV++EVMDDGRGMDR IL KA+AQGL +P+AE Sbjct: 453 IEPAAERLAAGKPAKASLQLNAIHESGSVVIEVMDDGRGMDREAILAKAVAQGLASPDAE 512 Query: 299 LSDAEIYRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAIDTEPGRGTVVRIR 358 LSDAEIYRFVFEPGFSTA QVTELSGRGVGMDVV+RNI+AL GEV+IDT GRGTVVR+R Sbjct: 513 LSDAEIYRFVFEPGFSTARQVTELSGRGVGMDVVRRNIEALHGEVSIDTGRGRGTVVRLR 572 Query: 359 LPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPRQNGSHIVAVRGEPLPFVPLRELFD 418 LPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPP+Q GSHIV VR EPLPFVPLRELFD Sbjct: 573 LPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPQQPGSHIVNVRDEPLPFVPLRELFD 632 Query: 419 LPAREQARARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDG 478 LPARE R R SLVIVQYG LRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDG Sbjct: 633 LPARE--RGRNSLVIVQYGPLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDG 690 Query: 479 RVALILDIPHLVQHTQQQEQGNTAAYAERSVASAP 513 RVALILDI HLV HTQQQEQG+ AYAER VASAP Sbjct: 691 RVALILDIAHLVHHTQQQEQGSAQAYAERGVASAP 725 >ref|YP_855578.1| chemotaxis protein CheA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gb|ABK38706.1| chemotaxis protein CheA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 737 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 266/533 (49%), Positives = 363/533 (68%), Gaps = 29/533 (5%) Query: 2 DAESCYLGVEICLASDSTRQTLEDVFEFVRDDSRIDILPPQSPLADYATVLQRLAPEEAV 61 D ESCYLG E+ L + + + L DVFEFVRDD RI I+PP S LA+Y ++ L PE+ Sbjct: 210 DPESCYLGYELDLDTQADKNALSDVFEFVRDDCRITIIPPHSKLAEYIDLINAL-PEDNE 268 Query: 62 RLASLWRGLGLFDDAQWRCLGAIGLKDSAAPP-----------LLSSAIADVV-----QR 105 L L G ++ +GL+ P + A+++VV ++ Sbjct: 269 MLGQLLVKTGALTASEL----VLGLQTQHEQPQTDAGKLGEILIAQGAVSEVVVDAALKK 324 Query: 106 PRPLDERRAQEQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDS 165 E + +E +++++ KLD LI+LVGELV+A + A L+A+R +DSQ +EA I Sbjct: 325 QSQNKESKNKEGRYVRVHADKLDDLINLVGELVVASSGANLLAQRSRDSQLQEANSTIAM 384 Query: 166 LMEQIRDAALTLRMVQINEVFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLAD 225 L+E+IRD AL LRMV I + F RF R+VRD++ +LDKDI L +TG +TELDKS+VE++ D Sbjct: 385 LVEEIRDGALRLRMVPIGDTFNRFQRVVRDVSHELDKDIALVITGGDTELDKSVVEKIGD 444 Query: 226 PLMHIVRNAIDHGIEPAAERIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILE 285 PLMH+VRNA+DHGIEPA R+AA KPA+ +L LNA H+SGS+++E+ DDG G+++ RIL+ Sbjct: 445 PLMHLVRNAMDHGIEPAERRVAACKPARGTLTLNAYHDSGSIVIEIQDDGAGLNKARILQ 504 Query: 286 KAIAQGLTTPEAELSDAEIYRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAI 345 KA +GL T A L+D EIY+ +FEPGFSTAE +T LSGRGVGMDVVKRNI AL+G V + Sbjct: 505 KAQERGLVTTNATLTDQEIYQLIFEPGFSTAEAITNLSGRGVGMDVVKRNIQALRGSVEL 564 Query: 346 DTEPGRGTVVRIRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPR----QNGSHIV 401 D++PG GT V+IRLPLTLAII GF V V +VIPLDMV+EC+++ G + + Sbjct: 565 DSKPGLGTRVQIRLPLTLAIIDGFLVRVSTTHYVIPLDMVIECVELTQSALADTQGRNYI 624 Query: 402 AVRGEPLPFVPLRELFDLPAREQARARK-SLVIVQYGQLRAGLLVDGLLGECQAVIKPLG 460 +RGE LPFV L+ FD+ E R R+ ++V+V +G ++GL+VD LLGE Q VIKPLG Sbjct: 625 NLRGEVLPFVRLQHYFDV---EGTRGRRENIVVVSHGGKKSGLVVDELLGEFQTVIKPLG 681 Query: 461 RLFGKVKGLSGSTILGDGRVALILDIPHLVQHTQQQEQGNTAAYAERSVASAP 513 +LF +++G+SGSTILG G VALILDIP L+QH +QE G + YA + + P Sbjct: 682 KLFQRLQGISGSTILGGGEVALILDIPSLIQHAIEQELGQLSQYAIPRLQTQP 734 >ref|YP_001143003.1| chemotaxis protein CheA [Aeromonas salmonicida subsp. salmonicida A449] gb|ABO91255.1| chemotaxis protein CheA [Aeromonas salmonicida subsp. salmonicida A449] Length = 737 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 262/529 (49%), Positives = 363/529 (68%), Gaps = 21/529 (3%) Query: 2 DAESCYLGVEICLASDSTRQTLEDVFEFVRDDSRIDILPPQSPLADYATVLQRLAPEE-- 59 D E+CYLG E+ + + + + TL DVFEFVRDD RI ILPP S +A+Y ++ L PE+ Sbjct: 210 DPETCYLGYELDVDTQADKSTLSDVFEFVRDDCRITILPPHSKIAEYIDLINEL-PEDND 268 Query: 60 ----------AVRLASLWRGLGLFDDAQWRCLGAIGLKDSAAPPLLSSAIADVVQRPRPL 109 A+ + L GL D Q +G A + + +++ Sbjct: 269 MLGQLLVKTGALTASELALGLQTQHDDQRTENSKLGEILVAQGAVDGVVVDAALKKQNQN 328 Query: 110 DERRAQEQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDSLMEQ 169 E + +E +++++ KLD+LI+LVGELV+A + A L+A+R +DSQ +EA I L+E+ Sbjct: 329 KENKNKEGRYVRVHADKLDELINLVGELVVASSGASLLAQRSRDSQLQEANSTIAMLVEE 388 Query: 170 IRDAALTLRMVQINEVFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLADPLMH 229 IRD AL LRMV I + F RF R+VRD++ +L+KDI L +TG +TELDKS+VE++ DPLMH Sbjct: 389 IRDGALHLRMVPIGDTFNRFQRVVRDVSHELNKDIALVITGGDTELDKSVVEKIGDPLMH 448 Query: 230 IVRNAIDHGIEPAAERIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILEKAIA 289 +VRN++DHGIE A +R+AAGKPA+ +L LNA H+SGS+++E++DDG G+++ RIL+KA Sbjct: 449 LVRNSMDHGIESAEQRLAAGKPARGTLTLNAYHDSGSIVIEILDDGAGLNKARILQKAQE 508 Query: 290 QGLTTPEAELSDAEIYRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAIDTEP 349 +GL A L+D EIY+ +FE GFSTAE VT LSGRGVGMDVVKRNI AL+G V +D++P Sbjct: 509 RGLVAAGATLTDQEIYQLIFEAGFSTAEAVTNLSGRGVGMDVVKRNITALRGSVELDSKP 568 Query: 350 GRGTVVRIRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPR----QNGSHIVAVRG 405 G+GT V+IRLPLTLAII GF V V +VIPLDMV+EC+++ G + + +RG Sbjct: 569 GQGTRVQIRLPLTLAIIDGFLVRVSTTHYVIPLDMVIECVELTQSALDDTQGRNYINLRG 628 Query: 406 EPLPFVPLRELFDLPAREQARARK-SLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFG 464 E LPFV L+ FD+ E AR R+ ++V+V +G ++GL+VD LLGE Q VIKPLG+LF Sbjct: 629 EVLPFVRLQHYFDV---EGARGRRENIVVVSHGGKKSGLVVDELLGEFQTVIKPLGKLFQ 685 Query: 465 KVKGLSGSTILGDGRVALILDIPHLVQHTQQQEQGNTAAYAERSVASAP 513 +++G+SGSTILG G VALILDIP L+QH QE G + YA + + P Sbjct: 686 RLQGISGSTILGGGEVALILDIPSLIQHAIDQELGQLSQYAIPRMQTQP 734 >ref|YP_004846749.1| CheA signal transduction histidine kinase [Pseudogulbenkiania sp. NH8B] dbj|BAK76335.1| CheA signal transduction histidine kinase [Pseudogulbenkiania sp. NH8B] Length = 722 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 265/527 (50%), Positives = 352/527 (66%), Gaps = 35/527 (6%) Query: 1 MDAESCYLGVEICLASDSTRQTLEDVFEFVRDDSRIDILPPQSPLADYATVLQRLAPEEA 60 MDAE+CYLG EI AS + + T+E VFEFVRDD + ILPP S LADY +LQ L PE+ Sbjct: 203 MDAEACYLGFEIRFASCADKTTIERVFEFVRDDCTLHILPPDSRLADYIDLLQSL-PEDT 261 Query: 61 VRLASLWRGLGLFDDAQWRCLGAIGLKDS---AAPPLLSSAIADVVQ------------- 104 +RL + +G A+ L D PP+ +A DVV Sbjct: 262 MRLGEILVRIGALTQAE--------LDDGLLMQQPPMAGAAPPDVVPLGEILVQQQVVQP 313 Query: 105 --------RPRPLDERRAQEQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQF 156 R +++++ E + I+I+ KLD+LIDLVGELVIA AS L+A R ++ Sbjct: 314 KLVEAAIIRQAQVNDKKTAEARLIRIQADKLDRLIDLVGELVIASASVSLLASRTGRAEL 373 Query: 157 EEATQAIDSLMEQIRDAALTLRMVQINEVFQRFPRIVRDIARDLDKDIDLTMTGSETELD 216 EA+ + L+E RD+AL LRMVQI E F RF RIVRD++++L KDI+L +TG ETELD Sbjct: 374 LEASSLMMRLVESTRDSALQLRMVQIGETFSRFNRIVRDVSKELGKDIELVITGGETELD 433 Query: 217 KSMVERLADPLMHIVRNAIDHGIEPAAERIAAGKPAKASLRLNAMHESGSVLVEVMDDGR 276 KS+VE++ DPL+H+VRNAIDHGIEP A R AAGKP + L LNA H+SGS+++ V DDG Sbjct: 434 KSVVEKIGDPLIHLVRNAIDHGIEPTAHRAAAGKPPRGRLELNASHDSGSIVITVSDDGG 493 Query: 277 GMDRTRILEKAIAQGLTTPEAELSDAEIYRFVFEPGFSTAEQVTELSGRGVGMDVVKRNI 336 G++R +I+ KA +GL P LS+AEI +FEPGFSTA+ V+ LSGRGVGMDVVKRNI Sbjct: 494 GLNRDKIVAKATERGLLQPGHNLSEAEIDNLIFEPGFSTADHVSNLSGRGVGMDVVKRNI 553 Query: 337 DALQGEVAIDTEPGRGTVVRIRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPRQN 396 +L+G V + + PG GT IRLPLT+AII GF V G A +V+PLDMVVEC+++ P+ + Sbjct: 554 QSLRGHVDVRSAPGAGTRFSIRLPLTMAIIDGFLVGTGQANYVVPLDMVVECLELSPQTS 613 Query: 397 GSHIVAVRGEPLPFVPLRELFDLPAREQARARKSLVIVQYGQLRAGLLVDGLLGECQAVI 456 +H + +RGE LPF+ L ELF+LP + AR+++V+V+ G + G++VD LLGE Q VI Sbjct: 614 DNHYLNLRGEVLPFIRLHELFNLPGKRP--ARENVVVVRTGAQKVGIVVDQLLGEFQTVI 671 Query: 457 KPLGRLFGKVKGLSGSTILGDGRVALILDIPHLVQHTQQQEQGNTAA 503 KPLG LF ++G+ GSTILG G VALILD+P LV ++E A+ Sbjct: 672 KPLGHLFQSLRGIGGSTILGSGEVALILDVPALVAIATRRESREAAS 718 >ref|YP_004393829.1| chemotaxis protein CheA [Aeromonas veronii B565] gb|AEB51212.1| Chemotaxis protein CheA [Aeromonas veronii B565] Length = 736 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 251/516 (48%), Positives = 356/516 (68%), Gaps = 27/516 (5%) Query: 2 DAESCYLGVEICLASDSTRQTLEDVFEFVRDDSRIDILPPQSPLADYATVLQRLAPEEAV 61 D E+CYLG EI S + + + DVFEFVRDD +I ILPP S +A++ +++ L PE++ Sbjct: 209 DPENCYLGYEIDFDSQADKTAISDVFEFVRDDCQITILPPHSKIAEFINLIESL-PEDSA 267 Query: 62 RLASLWRGLGLFDDAQWRCLGAIGLKDSAAPPL---------------LSSAIADV-VQR 105 L L G + A GL+ A P ++ A+ D +++ Sbjct: 268 MLGQLLVNTGALTAEEL----ASGLQAQQATPAEQAPKLGEILIAQGAVNEAVVDAALKK 323 Query: 106 PRPLDERRAQEQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDS 165 E +++E +++++ KLD LI+LVGELV+A + A L+A+R ++SQ +EAT I Sbjct: 324 QNQTKESKSKEGRYVRVHADKLDDLINLVGELVVASSGANLLAQRTRESQLQEATSVIAM 383 Query: 166 LMEQIRDAALTLRMVQINEVFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLAD 225 L+E+IRD+AL LRMV I + F RF R+VRD++++L+KDI L ++G+ETELDKS+VE++ D Sbjct: 384 LVEEIRDSALRLRMVPIGDTFNRFQRVVRDVSQELNKDITLVISGAETELDKSVVEKIGD 443 Query: 226 PLMHIVRNAIDHGIEPAAERIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILE 285 PLMH+VRN++DHGIE A +R+ AGKPA+ +L LNA H+S S+++E+ DDG G+++ RI + Sbjct: 444 PLMHLVRNSMDHGIESAEQRLLAGKPARGTLNLNAYHDSNSIVIEIRDDGAGLNKARIQQ 503 Query: 286 KAIAQGLTTPEAELSDAEIYRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAI 345 KAI +GL +P L+D EIY +FEPGFSTAE +T LSGRGVGMDVVKRNI AL+G V + Sbjct: 504 KAIERGLISPTTTLTDQEIYNLIFEPGFSTAEAITNLSGRGVGMDVVKRNITALRGTVDL 563 Query: 346 DTEPGRGTVVRIRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPR----QNGSHIV 401 D+ PG+GT V+IRLPLTLAII GF V V + +VIPLDMV+EC+++ G + + Sbjct: 564 DSIPGKGTRVQIRLPLTLAIIDGFLVRVCDTHYVIPLDMVIECVELTQSALSDTQGRNYI 623 Query: 402 AVRGEPLPFVPLRELFDLPAREQARARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGR 461 +RGE LPF+ L+ FD + R+++V+V + ++GL+VD LLGE Q VIKPLG+ Sbjct: 624 NLRGEVLPFIRLQHYFDTNGSKG--RRENIVVVSHAGKKSGLVVDELLGEFQTVIKPLGK 681 Query: 462 LFGKVKGLSGSTILGDGRVALILDIPHLVQHTQQQE 497 LF +++G+SGSTILG G VALILDIP L+QH QE Sbjct: 682 LFQRLQGISGSTILGGGEVALILDIPSLIQHAITQE 717