BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0726.p (473 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773819.1| transmembrane protein [Herbaspirillum serope... 413 e-113 ref|YP_004751432.1| putative transmembrane protein [Collimonas f... 230 4e-58 ref|YP_001354664.1| hypothetical protein mma_2974 [Janthinobacte... 204 3e-50 ref|YP_001101003.1| putative transmembrane protein [Herminiimona... 184 2e-44 ref|ZP_03699330.1| MJ0042 family finger-like protein [Lutiella n... 123 6e-26 >ref|YP_003773819.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61911.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 429 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 267/440 (60%), Positives = 314/440 (71%), Gaps = 22/440 (5%) Query: 45 MALATQCPFCQTTCRVAQDQLKLRGGLVRCGNCRQVFNGNEYLVEASVADGHYQPAPGSK 104 MALATQCP C T RV DQLKLRGGLVRCG+CRQVFNGN+YLVEASVADGHYQPAPGSK Sbjct: 1 MALATQCPHCLTIFRVVSDQLKLRGGLVRCGSCRQVFNGNDYLVEASVADGHYQPAPGSK 60 Query: 105 AQAGMATPVFAPAASSSSVPTPPANSPYERTGAPLTAQQPPFVPPAQTPVPEVNVPA-PQ 163 AQAG+ TP A A ++ + P + T P P PV + V + Sbjct: 61 AQAGVMTPSAAAAPATPTPAPSPVPASPMATRGP--------APQPSAPVHAIPVSSGTA 112 Query: 164 PMSAAAPVQAAASAPLPAAIPVIAEPKVFRSPTSPGYLPDLGASFKPAVPVDKTSPEDEA 223 P+SA P AP+PAAIPVIAEPKVFRSPTSPGY+PDLGA K VDK ++ Sbjct: 113 PVSAEPPPPVQVPAPVPAAIPVIAEPKVFRSPTSPGYIPDLGAPLKSPAAVDKDKRDEAD 172 Query: 224 SSPTLPEED----GPDSGA-LLRRSSAESDEIAAPPEVAAVF-----RIDDEPVLHDVAD 273 + P P D P GA LLRRSS+ DEI + ++ A F R+D+E V H Sbjct: 173 ALPPFPVADEIPTAPAGGAALLRRSSSTDDEIVSAADIDAAFGPATSRLDEEDVHH--LR 230 Query: 274 AKDGVPGDGEKSDAQEAEAEDDEAADEPGFVKRAERRARISQAMKMVMMVLAGVMVPVLL 333 + P +D A+ +D+A + PGFV+R ERR R + +K++MM+LAGVMVPVLL Sbjct: 231 GHEDEPDQLSAADHSAADDSEDDA-ELPGFVRRVERRERAGRVLKVIMMILAGVMVPVLL 289 Query: 334 LQSLYYWRNPLAASVPQLRPMLNGMCVAFHCTVGLPTEIERLSLESNELQVVPPNQNVYA 393 LQ+LYYWRNPLA ++P +RPMLNGMCVA HC+VGLP EI+RLSLE+NELQVVPPNQNVYA Sbjct: 290 LQALYYWRNPLAEALPPVRPMLNGMCVALHCSVGLPAEIDRLSLEANELQVVPPNQNVYA 349 Query: 394 LSLVMRNRGTSAQAWPHIELTLNNDDEKAVVRRVFRPRDYLADPAQVDRGIGPESEQQIK 453 L++VMRNRG AQAWPH+ELTLNNDDEKAVVRRVFRPRDYL + Q+DRGI +SEQQIK Sbjct: 350 LTVVMRNRGPGAQAWPHLELTLNNDDEKAVVRRVFRPRDYLPNARQIDRGIAADSEQQIK 409 Query: 454 LNFELKDALVSGYRIYLFYP 473 LNFELKDALVSGYR+YLFYP Sbjct: 410 LNFELKDALVSGYRVYLFYP 429 >ref|YP_004751432.1| putative transmembrane protein [Collimonas fungivorans Ter331] gb|AEK60609.1| putative transmembrane protein [Collimonas fungivorans Ter331] Length = 462 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 179/468 (38%), Positives = 246/468 (52%), Gaps = 45/468 (9%) Query: 45 MALATQCPFCQTTCRVAQDQLKLRGGLVRCGNCRQVFNGNEYLVEASVADGHYQPAPGSK 104 MALATQCP CQTT RVA DQLKLRGGLVRCG+CR+VFNG E+LV VA PAP + Sbjct: 1 MALATQCPHCQTTFRVANDQLKLRGGLVRCGSCREVFNGIEHLVRPDVAVPIAAPAPATA 60 Query: 105 AQAGMAT-PVFAPAASSSSVPTPPANSP--------YERTGAPLTAQQPPFVPPAQTPVP 155 ++ T AA + + P ++P E T P++ +P P+P Sbjct: 61 SEQDAVTLQTHGFAADEAPLAEPQHSAPPPVYVAPEPEPTPEPISGPEPAVAIATNHPLP 120 Query: 156 EVNVPAPQPMSAAAPVQAAASAPLPAAIPVIAEPKVFRSPTSPGYLPDLGAS-FKPAVPV 214 V PA P +A ++ AS + AAI + E TS D+ + F P Sbjct: 121 -VIAPAAAPETAG---RSMASGRVEAAIDGLEEDLRIAEETSQSAPADVHHTPFGLIKPS 176 Query: 215 DKTSPEDEASSPTLP---------EEDGPDSGALLRRSSAESDEIAAPPEVAAVFRIDDE 265 T+P++ AS+P P EED + L + + D A + DDE Sbjct: 177 AATAPDEAASNPPTPNVWHRHADDEEDKQIARMTLMHVAGQDDYTQAAKAESGATADDDE 236 Query: 266 PVLHDVAD--------------------AKDGVPGDGEKSDAQEAEAEDDEAADEPGFVK 305 L + D A D G +K + AE + AADEP FV Sbjct: 237 --LDRIIDELQRKPWRAEKTPAAANPSNAADSGDGSNKKKSRDKNPAEPEPAADEPDFVL 294 Query: 306 RAERRARISQAMKMVMMVLAGVMVPVLLLQSLYYWRNPLAASVPQLRPMLNGMCVAFHCT 365 A RR RI ++ M +++ L QS Y++R+ LAA VPQL+P+L G C C+ Sbjct: 295 SARRRQRIGGTLRWAMWGAGALLLIGLAGQSTYFFRDQLAARVPQLKPVLIGACAKIGCS 354 Query: 366 VGLPTEIERLSLESNELQVVPPNQNVYALSLVMRNRGTSAQAWPHIELTLNNDDEKAVVR 425 VGLP +I+ +S+E+NELQ V P +N+++L+L++RNR + QAWP+IELTLN+ +EKA+ R Sbjct: 355 VGLPMKIDSISIEANELQAVDPARNLFSLNLLLRNRSDTVQAWPNIELTLNDGNEKAIAR 414 Query: 426 RVFRPRDYLADPAQVDRGIGPESEQQIKLNFELKDALVSGYRIYLFYP 473 RVF P DYL+ A +G + EQ +KL FEL SGYR+YL+YP Sbjct: 415 RVFTPHDYLSATANPAQGFASDQEQPVKLGFELLQLKASGYRVYLYYP 462 >ref|YP_001354664.1| hypothetical protein mma_2974 [Janthinobacterium sp. Marseille] gb|ABR91179.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 413 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 146/435 (33%), Positives = 213/435 (48%), Gaps = 39/435 (8%) Query: 39 SRRGPLMALATQCPFCQTTCRVAQDQLKLRGGLVRCGNCRQVFNGNEYLVEASVADGHYQ 98 +R LMALATQCP CQTT RVA DQLKLR GLVRCG C+++FNG E L+ + D Sbjct: 18 ARHNALMALATQCPHCQTTFRVAHDQLKLRAGLVRCGYCKEIFNGIENLLPSE--DPASA 75 Query: 99 PAPGSKAQAGMATPVFAPAASSSSVPTPPANSPYERTGAPLTAQQPPFVPPAQTPVPEVN 158 T V AA+ + P AP A P Sbjct: 76 APAVPATTNAETTEVQVQAAAVA----PEIEQDANEDSAPAIADSNESTPDE-------- 123 Query: 159 VPAPQPMSAAAPVQAAASAPLPAAIPVIAEPKVFRSPTSPGYLPDLGASFKPAVPVDKTS 218 P ++A + A AP + I D+ A F+ V Sbjct: 124 ---PDETASADTEEPVAEAPAASKIDF-----------------DIPAGFERDADVYVPD 163 Query: 219 PEDEASSPTLPEEDGPDSGALLRRSSAESDEIAAPPEVAAVFRIDDEPVLHDVADAKDGV 278 P EA+ P ED LL + DEI A + + + ++D+ Sbjct: 164 PAYEANKP----EDPLQRMTLLDFTRDLPDEINAENTASTYDPNELDQAINDLQRKPWRR 219 Query: 279 PGDGEKSDAQEAEAEDDEAADEPGFVKRAERRARISQAMKMVMMVLAGVMVPVLLLQSLY 338 ++ Q+A E D A DEP F+KR R+ R+S+ +++ + + +++ LLQ +Y Sbjct: 220 SRKSAQAATQDALDEVD-ADDEPDFLKRGRRKQRLSRKLRIFLGISCFILLIAALLQGIY 278 Query: 339 YWRNPLAASVPQLRPMLNGMCVAFHCTVGLPTEIERLSLESNELQVVPPNQNVYALSLVM 398 +RN +A PQ +P+L C C + LP +I+++S+ES+ELQ + N++ + L+ ++ Sbjct: 279 VFRNQIAGWFPQAKPILIQTCELLGCRIDLPAQIDQVSIESSELQTLANNKDTFVLTTLL 338 Query: 399 RNRGTSAQAWPHIELTLNNDDEKAVVRRVFRPRDYLADPAQVDRGIGPESEQQIKLNFEL 458 RN ++ Q WPHIELTLN+ +EK ++RRVF P DYL + V G SE+ +KL+FEL Sbjct: 339 RNYSSTYQEWPHIELTLNDINEKPLLRRVFTPDDYLHNSEDVRIGFSANSERSVKLSFEL 398 Query: 459 KDALVSGYRIYLFYP 473 SGYR+YLFYP Sbjct: 399 TQLKASGYRVYLFYP 413 >ref|YP_001101003.1| putative transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL62882.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 400 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 141/430 (32%), Positives = 215/430 (50%), Gaps = 31/430 (7%) Query: 45 MALATQCPFCQTTCRVAQDQLKLRGGLVRCGNCRQVFNGNEYLVEASVADGHYQPAPGSK 104 MALATQCP CQTT RV DQLKLR GLVRCG+C+++FNG E+L+ + A+ + Sbjct: 1 MALATQCPHCQTTFRVVHDQLKLRAGLVRCGHCKEIFNGIEHLLPPTDAEPAVVEPAAAA 60 Query: 105 AQAGMATPVFAPAASSSSVPTPPANSPYERTGAPLTAQQPPFVPPAQTPVPEVNVPAPQP 164 A A + ++ S P P A+ + A+ V E + P Sbjct: 61 FAAAPAAFIAPATVATES-PLPAASDD---------------MAEAEADVVEADT-TPDA 103 Query: 165 MSAAAPVQAAASAPLPAAIPVIAEPKVFRSPTSPGYLPDLGASFKPAVPVDKTSPEDEAS 224 A++ + +PAA +EP+ S GA K P+ + + D Sbjct: 104 YLASSKI----DFDIPAAFETESEPESGIEIESDIEASLPGAIHKADDPLQRMTLLD--F 157 Query: 225 SPTLPEEDGPDSGALLRRSSAESDEIAAPPEV-AAVFRIDDEPVLHDVADAKDGVPGDGE 283 + P D +A+S + AP E+ A+ + +P + K G+ Sbjct: 158 TRDFPSHDADVEQFSRTEKNAQSFDPHAPDELDEAIEDLQRKPWRNSKKSVK------GK 211 Query: 284 KSDAQEAEAEDDEAADEPGFVKRAERRARISQAMKMVMMVLAGVMVPVLLLQSLYYWRNP 343 + D E +EP F+KRA R+ ++ ++ ++ + ++ L Q Y +RN Sbjct: 212 TRSTPPPDEADIEDEEEPAFLKRARRKQKLGGKLRTLLGMGCLILFLAALAQGTYLFRNQ 271 Query: 344 LAASVPQLRPMLNGMCVAFHCTVGLPTEIERLSLESNELQVVPPNQNVYALSLVMRNRGT 403 +A PQ +P+L +C F C + LP +I +S+ES+ELQ + N++ + L+ ++RN Sbjct: 272 IAGQFPQTKPLLTQLCDVFACRIDLPAQIAAVSIESSELQTLAENKDTFVLTTLLRNYSE 331 Query: 404 SAQAWPHIELTLNNDDEKAVVRRVFRPRDYLADPAQVDRGIGPESEQQIKLNFELKDALV 463 S Q WPHIELTLN+ +EK ++RRVF P DYL+ A+V G SE +KL+FEL Sbjct: 332 SLQTWPHIELTLNDANEKPLLRRVFAPADYLS-AAEVRAGFAASSEHAVKLSFELAQIKA 390 Query: 464 SGYRIYLFYP 473 SGYR+YLFYP Sbjct: 391 SGYRVYLFYP 400 >ref|ZP_03699330.1| MJ0042 family finger-like protein [Lutiella nitroferrum 2002] gb|EEG07510.1| MJ0042 family finger-like protein [Lutiella nitroferrum 2002] Length = 383 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 124/431 (28%), Positives = 175/431 (40%), Gaps = 50/431 (11%) Query: 45 MALATQCPFCQTTCRVAQDQLKLRGGLVRCGNCRQVFNGNEYLVEASVADGHYQPAPGSK 104 M TQCP CQT +V+ QL + GLVRCG C VFN E+++ A Sbjct: 1 MTHTTQCPGCQTRFKVSDAQLAVANGLVRCGRCAHVFNATEHMIVAEPP----------L 50 Query: 105 AQAGMATPVFAPAASSSSVPTPPANSPYERTGAPLTAQQPPFVPPAQTPVPEVNVPAPQP 164 P A +S P P G + P F P P E P Sbjct: 51 LAPTPPVPPPPAPAVPASRPDP---------GDDFELELPDFDPLGSPPATETAPPVETA 101 Query: 165 MSAAAPVQAAASAPLPAAIPVIAEPKVFRSPTSPGYLPDLGASFKPAVPVDKTSPEDEAS 224 ++A A + + ++E R T+P P AS P P P Sbjct: 102 VAATVSAPATDANDMATFQRALSEAMQHRDATAPIGDP-FAASETPPRPA--ADPLQALL 158 Query: 225 SPTLPEEDGPDSGALLRRSSAESDEIAAPPEVAAVFRIDDEPVLHDVADAKDGVPGDGEK 284 TL E P + + E+ E P+ A V + Sbjct: 159 EETLSEHAAPATRG--AHNETETREERGQPKGATVMVM---------------------- 194 Query: 285 SDAQEAEAEDDEAADEPGF--VKRAERRARISQAMKMVMMVLAGVMVPVLLLQSLYYWRN 342 +A AE D AD PGF A RRA Q M + L GV+ L LQ +Y R Sbjct: 195 PEADSAEPVFDPGADIPGFEPPPPAARRAGNWQTWLMAGVALIGVLA--LALQLVYLNRT 252 Query: 343 PLAASVPQLRPMLNGMCVAFHCTVGLPTEIERLSLESNELQVVPPNQNVYALSLVMRNRG 402 +AA VP+LRP L +C C+V LPT+ + E +EL VP QN+ L+ ++N Sbjct: 253 RIAAEVPELRPTLEKLCQGVGCSVPLPTDSALIRTEWSELSFVPDQQNLIQLAATLKNHA 312 Query: 403 TSAQAWPHIELTLNNDDEKAVVRRVFRPRDYLADPAQVDRGIGPESEQQIKLNFELKDAL 462 QA+P +E+TL + +++ V+R+VF P++YL SE +I + F++ Sbjct: 313 AYPQAYPMLEVTLKDAEDQVVIRKVFSPQEYLKPDDYKAMQFKGNSEIRIAMRFDVGKVR 372 Query: 463 VSGYRIYLFYP 473 GY + FYP Sbjct: 373 AMGYSLLWFYP 383