BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0719.p (460 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutam... 827 0.0 ref|YP_001354657.1| UDP-N-acetylmuramate: L-alanyl-gamma-D-gluta... 739 0.0 ref|YP_001100996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutam... 731 0.0 ref|YP_004751439.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutam... 722 0.0 ref|ZP_08274963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamy... 710 0.0 >ref|YP_003773829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 460 Score = 827 bits (2137), Expect = 0.0, Method: Composition-based stats. Identities = 428/460 (93%), Positives = 445/460 (96%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGFEPSQVEI 60 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGF+ +QVE+ Sbjct: 1 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGFDAAQVEL 60 Query: 61 KPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLSVAGTHGKTTTSAM 120 +PDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVL+VAGTHGKTTTSAM Sbjct: 61 EPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLAVAGTHGKTTTSAM 120 Query: 121 LAWVLEHAGYQPGFLIGGVPMNFGISARLGSDGQGGPSPFFVIEADEYDTAFFDKRSKFV 180 LAWVLEHAGYQPGFLIGGVPMNFG+SARLGSDGQGGP+PFFVIEADEYDTAFFDKRSKFV Sbjct: 121 LAWVLEHAGYQPGFLIGGVPMNFGVSARLGSDGQGGPAPFFVIEADEYDTAFFDKRSKFV 180 Query: 181 HYRSRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRVIANGREAALQRVLARGC 240 HYR+RTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGR+I NGRE ALQRVLARGC Sbjct: 181 HYRTRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRLIVNGREPALQRVLARGC 240 Query: 241 WSEREDFGVAAGQPGWSLQTHEDGRFEVFFEGQSQGTVDWSLTGEHNRMNALAAIAAARH 300 WSEREDFGVA GQ GWSL THEDGRF+VFF+GQ+QGTV+W LTGEHNRMNALAAIAAARH Sbjct: 241 WSEREDFGVAQGQSGWSLLTHEDGRFDVFFDGQTQGTVEWQLTGEHNRMNALAAIAAARH 300 Query: 301 VGVPAAQAIEALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKVGAARI 360 VGVP AQAI ALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKVGAARI Sbjct: 301 VGVPVAQAIAALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKVGAARI 360 Query: 361 LAVLEPRSNTMKLGTMKEALPGSLTDADLVFGFGAQSGRDALGWDLAEALAPLGQKAAAF 420 LAVLEPRSNTMKLGTMK+ALPGSL DADLVFGFGA +GRDALGWDL EALAPLG KAAAF Sbjct: 361 LAVLEPRSNTMKLGTMKQALPGSLADADLVFGFGAHTGRDALGWDLGEALAPLGAKAAAF 420 Query: 421 HDIDALVQAVKAAAQPGDHVLVMSNGGFGGVHQKLLDALA 460 D+ ALVQAVKAAA+PGDHVLVMSNGGFGGVHQKLLDALA Sbjct: 421 DDLAALVQAVKAAARPGDHVLVMSNGGFGGVHQKLLDALA 460 >ref|YP_001354657.1| UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Janthinobacterium sp. Marseille] gb|ABR89478.1| UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Janthinobacterium sp. Marseille] Length = 457 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 374/461 (81%), Positives = 409/461 (88%), Gaps = 6/461 (1%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGFEPSQVEI 60 MHIHILG+CGTFMGGLAVLAK AGHTVTGCDANVYPPMSTQLEAQGI L +G+ P Q+ + Sbjct: 1 MHIHILGVCGTFMGGLAVLAKAAGHTVTGCDANVYPPMSTQLEAQGIKLIEGYGPEQISL 60 Query: 61 KPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLSVAGTHGKTTTSAM 120 PDL+VIGNVVSRGNPLMEEILNRGLPY SGPQW+GE+ILQ KWVL+VAGTHGKTTTS+M Sbjct: 61 APDLYVIGNVVSRGNPLMEEILNRGLPYTSGPQWIGEHILQGKWVLAVAGTHGKTTTSSM 120 Query: 121 LAWVLEHAGYQPGFLIGGVPMNFGISARLGSDGQGGPSPFFVIEADEYDTAFFDKRSKFV 180 LAW+LE AGY PGFLIGGVPMNFGISARL G G S FFVIEADEYDTAFFDKRSKFV Sbjct: 121 LAWILEDAGYDPGFLIGGVPMNFGISARL--SGSGKESSFFVIEADEYDTAFFDKRSKFV 178 Query: 181 HYRSRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRVIANGREAALQRVLARGC 240 HY ++TA+LNNLEYDHADIFPDL AIETQFHHLVRTVPG+GRVIANGREA+LQRVL RGC Sbjct: 179 HYHAKTAILNNLEYDHADIFPDLHAIETQFHHLVRTVPGVGRVIANGREASLQRVLQRGC 238 Query: 241 WSEREDFGVAAGQPGWSLQTHEDGRFEVFFEGQSQGTVDWSLTGEHNRMNALAAIAAARH 300 WSE E FG G+ GWSL TH+DG F+V F G+ QGTV WSLTGEHNRMNALAAIAAARH Sbjct: 239 WSESEWFG---GKEGWSLATHDDGNFDVIFNGELQGTVQWSLTGEHNRMNALAAIAAARH 295 Query: 301 VGVPAAQAIEALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKVGAARI 360 VGV AQAI ALG F++VKRRMELRG+ +AVYDDFAHHPTAIATTV GLRKKVG ARI Sbjct: 296 VGVLPAQAIAALGQFENVKRRMELRGTVKDIAVYDDFAHHPTAIATTVEGLRKKVGKARI 355 Query: 361 LAVLEPRSNTMKLGTMKEALPGSLTDADLVFGFGAQ-SGRDALGWDLAEALAPLGQKAAA 419 LAVLEPRSNTMKLGTMKEALPGSL DADL+FG+GA +G+DALGWDLAEALAPLG+KA + Sbjct: 356 LAVLEPRSNTMKLGTMKEALPGSLVDADLIFGYGASGNGKDALGWDLAEALAPLGEKARS 415 Query: 420 FHDIDALVQAVKAAAQPGDHVLVMSNGGFGGVHQKLLDALA 460 F+D+ LVQA+ +AQ GD VLVMSNGGFGGVHQK+LDALA Sbjct: 416 FNDLPTLVQAIAQSAQAGDQVLVMSNGGFGGVHQKILDALA 456 >ref|YP_001100996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Herminiimonas arsenicoxydans] emb|CAL62875.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (Murein peptide ligase) [Herminiimonas arsenicoxydans] Length = 459 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 367/461 (79%), Positives = 406/461 (88%), Gaps = 4/461 (0%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGFEPSQVEI 60 MHIHILG+CGTFMGGLAVLAK AGHTVTGCDANVYPPMSTQLEAQGI L +GF Q+++ Sbjct: 1 MHIHILGVCGTFMGGLAVLAKAAGHTVTGCDANVYPPMSTQLEAQGIKLIEGFGTEQLDL 60 Query: 61 KPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLSVAGTHGKTTTSAM 120 +PDL+VIGNVVSRGNPLMEEILNRGLPY SGPQW+GE+ILQ KWVL+VAGTHGKTTTS+M Sbjct: 61 EPDLYVIGNVVSRGNPLMEEILNRGLPYTSGPQWIGEHILQGKWVLAVAGTHGKTTTSSM 120 Query: 121 LAWVLEHAGYQPGFLIGGVPMNFGISARLGSDGQGGPSPFFVIEADEYDTAFFDKRSKFV 180 LAW+LE AGY PGFLIGGVPMNFGISARL G G S FFVIEADEYDTAFFDKRSKFV Sbjct: 121 LAWILEDAGYDPGFLIGGVPMNFGISARL--SGTGRESSFFVIEADEYDTAFFDKRSKFV 178 Query: 181 HYRSRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRVIANGREAALQRVLARGC 240 HYR++TA+LNNLEYDHADIFPDLAAIETQFHHLVRTVPG+GR+IAN RE +LQRV+ RGC Sbjct: 179 HYRAKTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGVGRMIANAREESLQRVIKRGC 238 Query: 241 WSEREDFGVAAGQPGWSLQTHEDGRFEVFFEGQSQGTVDWSLTGEHNRMNALAAIAAARH 300 WSE E FG + Q GW++ TH+D F+VFF G+ QGTV W L GEHNRMNALAAIAAARH Sbjct: 239 WSETEWFG-SKEQDGWTMTTHDDDTFDVFFNGEKQGTVQWPLNGEHNRMNALAAIAAARH 297 Query: 301 VGVPAAQAIEALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKVGAARI 360 VGV AQAI +LG F++VKRRMELRG N +AVYDDFAHHPTAIATTVAGLRKKVG ARI Sbjct: 298 VGVLPAQAIASLGQFENVKRRMELRGVVNDIAVYDDFAHHPTAIATTVAGLRKKVGTARI 357 Query: 361 LAVLEPRSNTMKLGTMKEALPGSLTDADLVFGFGAQ-SGRDALGWDLAEALAPLGQKAAA 419 LAVLEPRSNTMKLGTMK ALPGSL DADLVFG+GA +G+DALGWDLAEALAPLG + +A Sbjct: 358 LAVLEPRSNTMKLGTMKAALPGSLLDADLVFGYGASGNGKDALGWDLAEALAPLGDRGSA 417 Query: 420 FHDIDALVQAVKAAAQPGDHVLVMSNGGFGGVHQKLLDALA 460 F D++ALV A+ AQPGD +LVMSNGGFGGVHQK+LD LA Sbjct: 418 FSDLNALVAAIAKNAQPGDQILVMSNGGFGGVHQKILDVLA 458 >ref|YP_004751439.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Collimonas fungivorans Ter331] gb|AEK60616.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Collimonas fungivorans Ter331] Length = 470 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 364/461 (78%), Positives = 403/461 (87%), Gaps = 3/461 (0%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGFEPSQVEI 60 MHIHILGICGTFMGGLAVLAK+AGH VTGCDANVYPPMSTQLEAQGI+L QGF Q + Sbjct: 1 MHIHILGICGTFMGGLAVLAKQAGHKVTGCDANVYPPMSTQLEAQGISLIQGFGVEQTGL 60 Query: 61 KPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLSVAGTHGKTTTSAM 120 +PDL+VIGNVV RGNPLMEEILNRGLPYVSGPQW+GE+IL+DKWVL+VAGTHGKTTTSAM Sbjct: 61 QPDLYVIGNVVVRGNPLMEEILNRGLPYVSGPQWIGEHILRDKWVLAVAGTHGKTTTSAM 120 Query: 121 LAWVLEHAGYQPGFLIGGVPMNFGISARLGSDGQGGPSPFFVIEADEYDTAFFDKRSKFV 180 LAW+LE AGY PGFLIGGVPMNFGISARL PS FFVIEADEYDTAFFDKRSKFV Sbjct: 121 LAWILEDAGYDPGFLIGGVPMNFGISARLSGKEGAAPSSFFVIEADEYDTAFFDKRSKFV 180 Query: 181 HYRSRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRVIANGREAALQRVLARGC 240 HY ++TA+LNNLEYDHADIFPDLAAIETQFHHLVRT+PG+GR++ N RE ALQRVL RGC Sbjct: 181 HYHAKTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPGVGRLVVNAREPALQRVLDRGC 240 Query: 241 WSEREDFGVAAGQPGWSLQTHEDGRFEVFFEGQSQGTVDWSLTGEHNRMNALAAIAAARH 300 WSE+E FG + GWSL T ++G FEV F+GQ QGTV W L+GEHNRMNALAAIAAARH Sbjct: 241 WSEKEFFG--GDRQGWSLSTQDNGHFEVSFDGQPQGTVQWGLSGEHNRMNALAAIAAARH 298 Query: 301 VGVPAAQAIEALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKVGAARI 360 VGVP AQAIE L F++VKRRMELRG+ +AVYDDFAHHPTAIATTVAGLRKKVGAARI Sbjct: 299 VGVPPAQAIETLSRFENVKRRMELRGTVREIAVYDDFAHHPTAIATTVAGLRKKVGAARI 358 Query: 361 LAVLEPRSNTMKLGTMKEALPGSLTDADLVFGFGAQ-SGRDALGWDLAEALAPLGQKAAA 419 LAVLEPRSNTMKLG MKEALPGSL +ADLVFG+GA +G+DAL WDLA AL PLG KA+ Sbjct: 359 LAVLEPRSNTMKLGAMKEALPGSLDEADLVFGYGASGTGKDALDWDLAAALQPLGAKAST 418 Query: 420 FHDIDALVQAVKAAAQPGDHVLVMSNGGFGGVHQKLLDALA 460 +H++D LV A+ AA+PGD VLVMSNGGFGGVHQK+L AL+ Sbjct: 419 YHELDQLVAAIAKAARPGDQVLVMSNGGFGGVHQKILAALS 459 >ref|ZP_08274963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31569.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] Length = 461 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 359/461 (77%), Positives = 399/461 (86%), Gaps = 3/461 (0%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGFEPSQVEI 60 MHIHILGICGTFMGGLAVLA++AGH VTGCDANVYPPMSTQL+ QGI L +GF+P Q+ + Sbjct: 1 MHIHILGICGTFMGGLAVLARQAGHRVTGCDANVYPPMSTQLQEQGIELIEGFDPEQISL 60 Query: 61 KPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLSVAGTHGKTTTSAM 120 PDLFVIGNVVSRGNPLME IL+RGLPY SGPQW+GE+IL+D+WVL+VAGTHGKTTT++M Sbjct: 61 APDLFVIGNVVSRGNPLMEAILDRGLPYTSGPQWIGEHILKDRWVLAVAGTHGKTTTASM 120 Query: 121 LAWVLEHAGYQPGFLIGGVPMNFGISARLGSDGQGGPSPFFVIEADEYDTAFFDKRSKFV 180 LAW+LE AGYQPGFLIGGVP+NFGISARL G+GG S FFVIEADEYDTAFFDKRSKFV Sbjct: 121 LAWILEDAGYQPGFLIGGVPLNFGISARLA--GEGGESAFFVIEADEYDTAFFDKRSKFV 178 Query: 181 HYRSRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRVIANGREAALQRVLARGC 240 HYR+RT VLNNLEYDHADIFPDL AIETQFHHLVRTVP IGR++ N REAAL V+ RGC Sbjct: 179 HYRARTVVLNNLEYDHADIFPDLGAIETQFHHLVRTVPRIGRLLVNQREAALHTVIERGC 238 Query: 241 WSEREDFGVAAGQPGWSLQTHEDGRFEVFFEGQSQGTVDWSLTGEHNRMNALAAIAAARH 300 WSE E FG AA GW L H DG F V F G QGTV W L GEHNRMNALAAIAAARH Sbjct: 239 WSEIEWFGGAADAAGWQLDEHADGSFTVIFHGAPQGTVHWMLNGEHNRMNALAAIAAARH 298 Query: 301 VGVPAAQAIEALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKVGAARI 360 VGVP AQAI +LGAFQ+V+RRMELRG + + V+DDFAHHPTAI TTVAGLR+ VG ARI Sbjct: 299 VGVPVAQAIASLGAFQNVRRRMELRGEVDAIRVFDDFAHHPTAITTTVAGLRQVVGTARI 358 Query: 361 LAVLEPRSNTMKLGTMKEALPGSLTDADLVFGFGAQ-SGRDALGWDLAEALAPLGQKAAA 419 LAVLEPRSNTMKLGTMK ALPGSL +ADLVFG+GA+ G++ALGW+LAEALAPLGQKA A Sbjct: 359 LAVLEPRSNTMKLGTMKSALPGSLAEADLVFGYGAKGDGKNALGWNLAEALAPLGQKAQA 418 Query: 420 FHDIDALVQAVKAAAQPGDHVLVMSNGGFGGVHQKLLDALA 460 F D+ LV A+ AAA+PGD +LVMSNGGFGGVHQK+LDALA Sbjct: 419 FDDLSELVAAIVAAARPGDQILVMSNGGFGGVHQKILDALA 459